Ecosyste.ms: Issues

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GitHub / gszep/FlowAtlas.jl issues and pull requests

#38 - incorrect encoding of + char in urls skips FCS files

Issue - State: closed - Opened by gszep 3 months ago - 2 comments

#37 - Open a set of FCS files without a .wsp file?

Issue - State: open - Opened by tlnagy 6 months ago - 2 comments

#36 - Batch correction

Pull Request - State: open - Opened by gszep 11 months ago - 1 comment

#35 - error right at the beginning

Issue - State: closed - Opened by vblanche21 over 1 year ago - 4 comments

#34 - update to use JSServe v2

Issue - State: open - Opened by gszep over 1 year ago
Labels: enhancement

#33 - labels on colour bar showing fluorescence heatmap are clipped

Issue - State: closed - Opened by gszep over 1 year ago - 2 comments
Labels: bug

#32 - Hiding doms in JSServe v1.2.4 prevents OpenLayers from displaying tiles

Issue - State: closed - Opened by gszep over 2 years ago - 8 comments
Labels: bug

#30 - CompatHelper: bump compat for Images to 0.25, (keep existing compat)

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago - 1 comment

#28 - use quadtree to store embedding coordinates

Issue - State: open - Opened by gszep about 3 years ago
Labels: enhancement

#27 - display percentage labels alongside gated populations

Issue - State: open - Opened by gszep about 3 years ago
Labels: enhancement

#26 - update violin plots when dragging gates

Issue - State: open - Opened by gszep about 3 years ago
Labels: enhancement

#25 - TagBot trigger issue

Issue - State: closed - Opened by JuliaTagBot over 3 years ago - 15 comments

#24 - CompatHelper: bump compat for "ImageIO" to "0.5"

Pull Request - State: closed - Opened by github-actions[bot] over 3 years ago - 1 comment

#23 - embedding with missing data

Issue - State: closed - Opened by gszep over 3 years ago - 4 comments
Labels: bug

#22 - batch effect warning

Issue - State: open - Opened by gszep over 3 years ago
Labels: documentation, enhancement

#21 - warning when user compares results from differing data origins

Issue - State: open - Opened by gszep over 3 years ago
Labels: documentation, enhancement

#20 - filters do not show cells when no conditions/groups are present

Issue - State: closed - Opened by gszep over 3 years ago - 1 comment
Labels: bug

#19 - restructure runner as julia package

Issue - State: closed - Opened by gszep over 3 years ago - 20 comments
Labels: required

#18 - use browser cache to store default colour scheme preferences

Issue - State: open - Opened by gszep over 3 years ago
Labels: enhancement

#17 - user input for naming polygons; display in violin plot legend

Issue - State: open - Opened by gszep over 3 years ago
Labels: enhancement

#16 - only display selected conditions on frequency panel

Issue - State: closed - Opened by gszep over 3 years ago
Labels: enhancement

#15 - colorby populations, conditions, groups

Issue - State: open - Opened by gszep over 3 years ago
Labels: enhancement

#14 - reset button

Issue - State: open - Opened by gszep over 3 years ago
Labels: enhancement

#13 - dynamic colorbar and gate by level

Issue - State: closed - Opened by gszep over 3 years ago - 6 comments
Labels: enhancement

#12 - csv, svg export of panel figures

Issue - State: closed - Opened by gszep over 3 years ago - 6 comments
Labels: enhancement

#11 - missing group="tLN" for sampleIDs 9 and 34

Issue - State: closed - Opened by gszep over 3 years ago - 1 comment
Labels: annotation

#10 - workspace

Pull Request - State: closed - Opened by gszep about 4 years ago

#9 - Add Gating-ML files for the rest of FCS files with B-cells

Issue - State: closed - Opened by mad3cientist over 4 years ago

#8 - Benchmark against FlowCAP-III

Issue - State: open - Opened by mad3cientist over 4 years ago

#7 - Explore other clustering algorithm options

Issue - State: open - Opened by mad3cientist over 4 years ago

#6 - Optimising cluster hyperparameters

Issue - State: open - Opened by mad3cientist over 4 years ago

#5 - Time series of all channels signal anomaly gating

Issue - State: open - Opened by mad3cientist over 4 years ago
Labels: enhancement

#4 - Singlet and Live cell extraction

Issue - State: open - Opened by mad3cientist over 4 years ago
Labels: enhancement

#3 - add CD19 channel and B-cells back

Issue - State: closed - Opened by mad3cientist over 4 years ago - 1 comment
Labels: enhancement

#2 - Optional batch normalisation to reference fcs files

Issue - State: open - Opened by mad3cientist over 4 years ago
Labels: enhancement

#1 - Confusion matrix and ROC

Issue - State: open - Opened by mad3cientist over 4 years ago
Labels: enhancement