Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / griffithlab/rnaseq_tutorial_wiki issues and pull requests

#37 - cDNA fasta file for mitochondrial gene expression analysis

Issue - State: closed - Opened by FL512 5 months ago - 2 comments

#37 - cDNA fasta file for mitochondrial gene expression analysis

Issue - State: closed - Opened by FL512 5 months ago - 2 comments

#36 - Updating Integrated assignment with new data and questions/answers

Pull Request - State: closed - Opened by hfarooq over 6 years ago

#36 - Updating Integrated assignment with new data and questions/answers

Pull Request - State: closed - Opened by hfarooq over 6 years ago

#35 - Update StringTie params

Issue - State: open - Opened by jasonwalker80 about 7 years ago

#35 - Update StringTie params

Issue - State: open - Opened by jasonwalker80 about 7 years ago

#34 - adding Trinity and Trinotate modules

Pull Request - State: closed - Opened by brianjohnhaas over 7 years ago - 1 comment

#34 - adding Trinity and Trinotate modules

Pull Request - State: closed - Opened by brianjohnhaas over 7 years ago - 1 comment

#33 - Anyone can edit the Wiki

Issue - State: closed - Opened by paulklemm almost 8 years ago - 1 comment

#33 - Anyone can edit the Wiki

Issue - State: closed - Opened by paulklemm almost 8 years ago - 1 comment

#32 - Refer to new Flexbar home on github

Pull Request - State: closed - Opened by paulklemm almost 8 years ago

#32 - Refer to new Flexbar home on github

Pull Request - State: closed - Opened by paulklemm almost 8 years ago

#31 - update the de vis.

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago

#31 - update the de vis.

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago

#30 - use ballgown R script.

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago

#30 - use ballgown R script.

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago

#29 - Remove testfile.

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago

#29 - Remove testfile.

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago

#28 - Add test file to test travis-ci.

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago

#28 - Add test file to test travis-ci.

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago

#27 - Update png images for RNA-seq flowchart.

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago

#27 - Update png images for RNA-seq flowchart.

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago

#26 - Update the RNA-seq flow chart images to HISAT2/StringTie/Ballgown.

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago

#26 - Update the RNA-seq flow chart images to HISAT2/StringTie/Ballgown.

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago

#24 - Cleanup stringtie ballgown

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago

#24 - Cleanup stringtie ballgown

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago

#23 - Use/download R Script to run ballgown

Issue - State: open - Opened by jasonwalker80 about 8 years ago

#23 - Use/download R Script to run ballgown

Issue - State: open - Opened by jasonwalker80 about 8 years ago

#22 - Replace iGenomes with HISAT2 bundles.

Issue - State: open - Opened by jasonwalker80 about 8 years ago

#22 - Replace iGenomes with HISAT2 bundles.

Issue - State: open - Opened by jasonwalker80 about 8 years ago

#21 - Stringtie ballgown

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago

#21 - Stringtie ballgown

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago

#19 - Replace htseq-count with featureCounts

Issue - State: open - Opened by jasonwalker80 about 8 years ago

#19 - Replace htseq-count with featureCounts

Issue - State: open - Opened by jasonwalker80 about 8 years ago

#18 - Add -l option to de novo and reference guided modes.

Issue - State: closed - Opened by jasonwalker80 about 8 years ago

#18 - Add -l option to de novo and reference guided modes.

Issue - State: closed - Opened by jasonwalker80 about 8 years ago

#16 - Update to grch38

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago

#16 - Update to grch38

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago

#15 - Update to use AMI data files.

Issue - State: closed - Opened by jasonwalker80 about 8 years ago - 1 comment

#15 - Update to use AMI data files.

Issue - State: closed - Opened by jasonwalker80 about 8 years ago - 1 comment

#14 - Fix FASTA reference path

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago

#14 - Fix FASTA reference path

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago

#12 - Hisat2 Alignment

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago - 2 comments

#12 - Hisat2 Alignment

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago - 2 comments

#11 - Update Module 4 scripts

Issue - State: closed - Opened by jasonwalker80 about 8 years ago - 3 comments

#11 - Update Module 4 scripts

Issue - State: closed - Opened by jasonwalker80 about 8 years ago - 3 comments

#10 - Make RSeQC required

Issue - State: open - Opened by jasonwalker80 about 8 years ago

#10 - Make RSeQC required

Issue - State: open - Opened by jasonwalker80 about 8 years ago

#8 - Convert from samtools to sambamba

Issue - State: open - Opened by jasonwalker80 about 8 years ago - 1 comment

#8 - Convert from samtools to sambamba

Issue - State: open - Opened by jasonwalker80 about 8 years ago - 1 comment

#7 - Use fenced code blocks consistently.

Issue - State: closed - Opened by jasonwalker80 about 8 years ago - 1 comment

#7 - Use fenced code blocks consistently.

Issue - State: closed - Opened by jasonwalker80 about 8 years ago - 1 comment

#6 - Perl or Python one-liners

Issue - State: closed - Opened by jasonwalker80 about 8 years ago - 1 comment

#6 - Perl or Python one-liners

Issue - State: closed - Opened by jasonwalker80 about 8 years ago - 1 comment

#5 - Update chr22+ERCC92 to GRCh38

Issue - State: closed - Opened by jasonwalker80 about 8 years ago - 2 comments

#4 - Travis master only

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago

#3 - initial README.md with travis build badge.

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago

#2 - Correct the github org and repo names.

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago

#1 - Add instructions for contributing to wiki.

Pull Request - State: closed - Opened by jasonwalker80 about 8 years ago - 1 comment