Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / griffithlab/genvisr issues and pull requests

#50 - Added developers to description

Pull Request - State: closed - Opened by kcampbel over 9 years ago - 1 comment

#50 - Added developers to description

Pull Request - State: closed - Opened by kcampbel over 9 years ago - 1 comment

#49 - fixes #48

Pull Request - State: closed - Opened by zlskidmore over 9 years ago

#49 - fixes #48

Pull Request - State: closed - Opened by zlskidmore over 9 years ago

#48 - mutSpec Mutations per MB graph not aligning with small sample size

Issue - State: closed - Opened by kkrysiak over 9 years ago - 1 comment

#48 - mutSpec Mutations per MB graph not aligning with small sample size

Issue - State: closed - Opened by kkrysiak over 9 years ago - 1 comment

#47 - Bkm120 3

Pull Request - State: closed - Opened by zlskidmore over 9 years ago

#47 - Bkm120 3

Pull Request - State: closed - Opened by zlskidmore over 9 years ago

#44 - minor vignette tweak

Pull Request - State: closed - Opened by zlskidmore over 9 years ago

#44 - minor vignette tweak

Pull Request - State: closed - Opened by zlskidmore over 9 years ago

#43 - add .pdf vignette version, renamed function to cnSpec.build

Pull Request - State: closed - Opened by zlskidmore over 9 years ago

#43 - add .pdf vignette version, renamed function to cnSpec.build

Pull Request - State: closed - Opened by zlskidmore over 9 years ago

#41 - finished TvTi tweaks, added CN data from Luc project

Pull Request - State: closed - Opened by zlskidmore over 9 years ago

#41 - finished TvTi tweaks, added CN data from Luc project

Pull Request - State: closed - Opened by zlskidmore over 9 years ago

#39 - fixes #30

Pull Request - State: closed - Opened by zlskidmore over 9 years ago

#39 - fixes #30

Pull Request - State: closed - Opened by zlskidmore over 9 years ago

#38 - Lolliplot should have a parameter for hard cutoffs when stacking points

Issue - State: closed - Opened by zlskidmore over 9 years ago
Labels: enhancement

#38 - Lolliplot should have a parameter for hard cutoffs when stacking points

Issue - State: closed - Opened by zlskidmore over 9 years ago
Labels: enhancement

#36 - fixes #35

Pull Request - State: closed - Opened by zlskidmore over 9 years ago

#36 - fixes #35

Pull Request - State: closed - Opened by zlskidmore over 9 years ago

#35 - Cosmic Track significantly increases runtime

Issue - State: closed - Opened by zlskidmore over 9 years ago

#35 - Cosmic Track significantly increases runtime

Issue - State: closed - Opened by zlskidmore over 9 years ago

#34 - Fixes #33.

Pull Request - State: closed - Opened by ahwagner over 9 years ago

#34 - Fixes #33.

Pull Request - State: closed - Opened by ahwagner over 9 years ago

#33 - `NULL` in `transform` errors out

Issue - State: closed - Opened by ahwagner over 9 years ago

#33 - `NULL` in `transform` errors out

Issue - State: closed - Opened by ahwagner over 9 years ago

#32 - Fixes #29. Adds trx labels to `gene_features` for #30.

Pull Request - State: closed - Opened by ahwagner over 9 years ago

#32 - Fixes #29. Adds trx labels to `gene_features` for #30.

Pull Request - State: closed - Opened by ahwagner over 9 years ago

#31 - Does conversion of c.notation to p.notation really work as described?

Issue - State: closed - Opened by obigriffith over 9 years ago - 1 comment

#31 - Does conversion of c.notation to p.notation really work as described?

Issue - State: closed - Opened by obigriffith over 9 years ago - 1 comment

#30 - example figure for genCov draws UTRs inconsistently

Issue - State: closed - Opened by obigriffith over 9 years ago - 2 comments

#30 - example figure for genCov draws UTRs inconsistently

Issue - State: closed - Opened by obigriffith over 9 years ago - 2 comments

#29 - gene_plot error detected for CBFB gene

Issue - State: closed - Opened by zlskidmore over 9 years ago
Labels: bug

#29 - gene_plot error detected for CBFB gene

Issue - State: closed - Opened by zlskidmore over 9 years ago
Labels: bug

#28 - In the waterfall plot add the option to display clinical information

Issue - State: closed - Opened by zlskidmore over 9 years ago - 1 comment
Labels: enhancement

#28 - In the waterfall plot add the option to display clinical information

Issue - State: closed - Opened by zlskidmore over 9 years ago - 1 comment
Labels: enhancement

#27 - Warnings: In loop_apply(n, do.ply) : Stacking not well defined when ymin != 0

Issue - State: closed - Opened by zlskidmore over 9 years ago
Labels: enhancement

#27 - Warnings: In loop_apply(n, do.ply) : Stacking not well defined when ymin != 0

Issue - State: closed - Opened by zlskidmore over 9 years ago
Labels: enhancement

#26 - Support for addtional file_types in waterfall plot

Issue - State: closed - Opened by zlskidmore over 9 years ago - 3 comments
Labels: enhancement

#26 - Support for addtional file_types in waterfall plot

Issue - State: closed - Opened by zlskidmore over 9 years ago - 3 comments
Labels: enhancement

#25 - Bug In Lolliplot disconnect between amino acid change and protien

Issue - State: closed - Opened by zlskidmore over 9 years ago - 2 comments
Labels: bug

#25 - Bug In Lolliplot disconnect between amino acid change and protien

Issue - State: closed - Opened by zlskidmore over 9 years ago - 2 comments
Labels: bug

#24 - Error: Error: Results must be all atomic, or all data frames

Issue - State: closed - Opened by zlskidmore over 9 years ago - 3 comments
Labels: bug

#24 - Error: Error: Results must be all atomic, or all data frames

Issue - State: closed - Opened by zlskidmore over 9 years ago - 3 comments
Labels: bug

#23 - speedup calls to map_coord_space

Pull Request - State: closed - Opened by ahwagner over 9 years ago

#23 - speedup calls to map_coord_space

Pull Request - State: closed - Opened by ahwagner over 9 years ago

#22 - Add compression ratio column to master table

Pull Request - State: closed - Opened by ahwagner over 9 years ago

#22 - Add compression ratio column to master table

Pull Request - State: closed - Opened by ahwagner over 9 years ago

#21 - Change Plot track to align vertically

Issue - State: closed - Opened by zlskidmore over 9 years ago - 1 comment
Labels: enhancement

#21 - Change Plot track to align vertically

Issue - State: closed - Opened by zlskidmore over 9 years ago - 1 comment
Labels: enhancement

#20 - Bug fix, speedup calls to plot_cov by returning master from gene_plot

Pull Request - State: closed - Opened by ahwagner over 9 years ago

#20 - Bug fix, speedup calls to plot_cov by returning master from gene_plot

Pull Request - State: closed - Opened by ahwagner over 9 years ago

#19 - Transition/Transversion ratio add on

Issue - State: closed - Opened by zlskidmore over 9 years ago - 1 comment
Labels: enhancement

#19 - Transition/Transversion ratio add on

Issue - State: closed - Opened by zlskidmore over 9 years ago - 1 comment
Labels: enhancement

#18 - Multiple scaling

Pull Request - State: closed - Opened by ahwagner over 9 years ago

#18 - Multiple scaling

Pull Request - State: closed - Opened by ahwagner over 9 years ago

#17 - Bug fixes and improvements.

Pull Request - State: closed - Opened by ahwagner over 9 years ago

#17 - Bug fixes and improvements.

Pull Request - State: closed - Opened by ahwagner over 9 years ago

#16 - Cache txdb for given range

Issue - State: closed - Opened by ahwagner over 9 years ago - 2 comments
Labels: enhancement

#16 - Cache txdb for given range

Issue - State: closed - Opened by ahwagner over 9 years ago - 2 comments
Labels: enhancement

#15 - NA in master table when specifying a genomic region with 1 or 0 UTR/CDS segments

Issue - State: closed - Opened by ahwagner over 9 years ago
Labels: bug

#15 - NA in master table when specifying a genomic region with 1 or 0 UTR/CDS segments

Issue - State: closed - Opened by ahwagner over 9 years ago
Labels: bug

#14 - resolved issue8, remove x axis labels when intronic transform is used

Pull Request - State: closed - Opened by zlskidmore over 9 years ago

#14 - resolved issue8, remove x axis labels when intronic transform is used

Pull Request - State: closed - Opened by zlskidmore over 9 years ago

#13 - Bug when specifying a small genomic range

Issue - State: closed - Opened by zlskidmore over 9 years ago - 2 comments
Labels: bug

#13 - Bug when specifying a small genomic range

Issue - State: closed - Opened by zlskidmore over 9 years ago - 2 comments
Labels: bug

#12 - Set X-axis limits on coverage plot

Issue - State: closed - Opened by zlskidmore over 9 years ago - 1 comment
Labels: bug, enhancement

#12 - Set X-axis limits on coverage plot

Issue - State: closed - Opened by zlskidmore over 9 years ago - 1 comment
Labels: bug, enhancement

#11 - Collapse UTRs?

Issue - State: closed - Opened by ahwagner over 9 years ago - 1 comment

#11 - Collapse UTRs?

Issue - State: closed - Opened by ahwagner over 9 years ago - 1 comment

#10 - Point binning

Issue - State: closed - Opened by ahwagner over 9 years ago - 2 comments
Labels: enhancement

#10 - Point binning

Issue - State: closed - Opened by ahwagner over 9 years ago - 2 comments
Labels: enhancement

#9 - Gene buffers

Issue - State: closed - Opened by ahwagner over 9 years ago - 1 comment
Labels: enhancement

#9 - Gene buffers

Issue - State: closed - Opened by ahwagner over 9 years ago - 1 comment
Labels: enhancement

#8 - X axis numbers

Issue - State: closed - Opened by ahwagner over 9 years ago - 1 comment
Labels: bug

#8 - X axis numbers

Issue - State: closed - Opened by ahwagner over 9 years ago - 1 comment
Labels: bug

#7 - Intron ribbons

Issue - State: closed - Opened by ahwagner over 9 years ago - 2 comments
Labels: enhancement, wontfix

#7 - Intron ribbons

Issue - State: closed - Opened by ahwagner over 9 years ago - 2 comments
Labels: enhancement, wontfix

#6 - Fix coordinate bug in intronic regions.

Pull Request - State: closed - Opened by ahwagner over 9 years ago
Labels: bug

#6 - Fix coordinate bug in intronic regions.

Pull Request - State: closed - Opened by ahwagner over 9 years ago
Labels: bug

#5 - add master region table constructor

Pull Request - State: closed - Opened by ahwagner over 9 years ago
Labels: enhancement

#4 - small bug fixes.

Pull Request - State: closed - Opened by ahwagner over 9 years ago

#3 - as.vector bug fix

Pull Request - State: closed - Opened by ahwagner over 9 years ago

#2 - Intron buffer

Issue - State: closed - Opened by ahwagner over 9 years ago - 1 comment
Labels: bug, enhancement, question

#1 - Add in "User Intron" space

Issue - State: closed - Opened by ahwagner over 9 years ago - 1 comment
Labels: enhancement