Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / griffithlab/civic-client issues and pull requests

#100 - Entity edit form should provide the user a link to the applied/suggested record, or redirect them

Issue - State: closed - Opened by jmcmichael over 9 years ago - 2 comments
Labels: enhancement, ready

#99 - Links to Data Releases broken?

Issue - State: closed - Opened by malachig over 9 years ago - 1 comment
Labels: bug

#97 - Download links for releases include the development server port

Issue - State: closed - Opened by acoffman over 9 years ago - 2 comments
Labels: bug

#96 - Comment on the commenting in CIViC

Issue - State: closed - Opened by malachig over 9 years ago - 1 comment
Labels: enhancement

#95 - When I submit a revision for review without a comment, a dummy comment is created

Issue - State: closed - Opened by malachig over 9 years ago - 4 comments
Labels: bug, ready

#94 - Entries in Talk/Log tab should link to relevant entry in Talk/Comment or Talk/Revision

Issue - State: closed - Opened by obigriffith over 9 years ago - 1 comment
Labels: enhancement

#93 - data grids need 'no [entity] found' notices

Issue - State: open - Opened by jmcmichael over 9 years ago - 1 comment
Labels: enhancement

#91 - Commenting is buried a little deep

Issue - State: closed - Opened by obigriffith over 9 years ago - 3 comments
Labels: enhancement

#90 - Quick search broken

Issue - State: closed - Opened by obigriffith over 9 years ago - 1 comment

#89 - Clinical significance options (edit evidence) should change depending on Evidence type

Issue - State: closed - Opened by obigriffith over 9 years ago - 2 comments
Labels: enhancement

#88 - Submit Revision transition, etc

Issue - State: closed - Opened by obigriffith over 9 years ago - 1 comment
Labels: enhancement

#87 - Evidence levels out of date?

Issue - State: closed - Opened by obigriffith over 9 years ago - 1 comment
Labels: enhancement

#86 - Evidence item revisions not working

Issue - State: closed - Opened by obigriffith over 9 years ago - 4 comments
Labels: bug

#84 - reloading page when on an edit view causes summary tab to incorrectly display as active

Issue - State: closed - Opened by jmcmichael over 9 years ago - 1 comment
Labels: bug

#83 - evidence level display class

Issue - State: closed - Opened by bwalsh over 9 years ago - 7 comments
Labels: enhancement

#81 - Drug display in evidence summary?

Issue - State: closed - Opened by bwalsh over 9 years ago - 1 comment

#80 - Entrez ID not displaying correctly (events-refactor branch)

Issue - State: closed - Opened by kkrysiak over 9 years ago - 2 comments
Labels: bug

#79 - Pre-alpha testing feedback (plus IE edit icon looks wonky)

Issue - State: closed - Opened by bwalsh over 9 years ago - 9 comments
Labels: bug

#78 - Support for latest civic-server release

Issue - State: closed - Opened by bwalsh over 9 years ago - 1 comment

#77 - Variant Group variants displaying multiple times`

Issue - State: closed - Opened by nspies13 over 9 years ago - 2 comments

#76 - Add a Gitter chat badge to README.md

Pull Request - State: closed - Opened by gitter-badger over 9 years ago

#75 - Google analytics appears to be not sending client state transition information

Issue - State: closed - Opened by jmcmichael over 9 years ago - 1 comment
Labels: bug

#74 - ensure login process conforms to the OAuth providers' guidelines

Issue - State: closed - Opened by jmcmichael over 9 years ago - 1 comment
Labels: enhancement

#72 - Users should be warned not to enter data that could compromise patient privacy?

Issue - State: closed - Opened by malachig over 9 years ago - 7 comments
Labels: question

#71 - Attribution for group, project, grant etc

Issue - State: closed - Opened by obigriffith over 9 years ago - 4 comments
Labels: enhancement

#70 - complete and approve Add Evidence form specification

Issue - State: closed - Opened by jmcmichael over 9 years ago - 2 comments
Labels: enhancement

#69 - CIViC genes and variants should have some direct link to DGIdb

Issue - State: closed - Opened by malachig over 9 years ago - 3 comments
Labels: enhancement

#68 - Should we have 'sub-levels' and if so, how exactly should we define them?

Issue - State: closed - Opened by malachig over 9 years ago - 4 comments
Labels: enhancement, question

#67 - Variants within a gene should be sorted according amino acid or genome coordinate

Issue - State: closed - Opened by malachig over 9 years ago - 9 comments
Labels: enhancement, high priority

#66 - Create a visualization of mutations relative to the protein sequence, its domains, mutation hotspots, etc.

Issue - State: open - Opened by malachig over 9 years ago - 8 comments
Labels: enhancement

#64 - Edit gene button has disappeared?

Issue - State: closed - Opened by nspies13 over 9 years ago - 3 comments

#63 - Make subtabs or pages for each table within the Help page.

Issue - State: closed - Opened by nspies13 almost 10 years ago - 1 comment
Labels: enhancement

#62 - Add variants to variant groups

Issue - State: closed - Opened by nspies13 almost 10 years ago - 2 comments
Labels: enhancement

#61 - Commenting on a variant group causes an error

Issue - State: closed - Opened by malachig almost 10 years ago - 2 comments
Labels: bug

#60 - ensure that the app sends google analytics tags upon state change success

Issue - State: closed - Opened by jmcmichael almost 10 years ago - 1 comment
Labels: bug

#59 - Variant groups may not always be associated with Genes.

Issue - State: closed - Opened by nspies13 almost 10 years ago - 2 comments

#58 - Display a filler when Gene/Variant summary is blank

Issue - State: closed - Opened by nspies13 almost 10 years ago
Labels: enhancement

#57 - For users without first/last name in github. The login bar shows this

Issue - State: closed - Opened by nspies13 almost 10 years ago
Labels: duplicate

#56 - For users without first/last name in github. The login bar shows this.

Issue - State: closed - Opened by nspies13 almost 10 years ago - 2 comments

#54 - users should be able to edit and delete their own posts

Issue - State: closed - Opened by nspies13 almost 10 years ago - 5 comments
Labels: enhancement

#53 - comment form should reset its contents after a comment is succesfully submitted

Issue - State: closed - Opened by obigriffith almost 10 years ago - 2 comments
Labels: bug

#52 - Cancel button not working on Add Evidence page

Issue - State: closed - Opened by obigriffith almost 10 years ago

#51 - suppress jump to top-of-page on most UI links

Issue - State: closed - Opened by jmcmichael almost 10 years ago - 1 comment

#50 - should ratings be calculated in aggregate or as a discrete value per record?

Issue - State: closed - Opened by kkrysiak almost 10 years ago - 7 comments
Labels: enhancement, question

#49 - Reorder the Add Evidence Statment form items

Issue - State: closed - Opened by kkrysiak almost 10 years ago - 1 comment

#48 - The importer didn't throw an error on missing DOIDs

Issue - State: closed - Opened by kkrysiak almost 10 years ago - 1 comment

#47 - Display Gene Summary Source information

Issue - State: closed - Opened by nspies13 almost 10 years ago - 2 comments
Labels: enhancement

#46 - API documentation page needs appropriate content

Issue - State: closed - Opened by jmcmichael almost 10 years ago - 1 comment

#45 - Add a page for the FAQ and display it

Issue - State: closed - Opened by nspies13 almost 10 years ago - 2 comments

#44 - Reorder fields in evidence view for clarity's sake.

Issue - State: closed - Opened by nspies13 almost 10 years ago

#43 - Add a field for 'Coordinates' from variant_hgvs

Issue - State: closed - Opened by nspies13 almost 10 years ago

#42 - Force correct 'Clinical Significance' values based on 'Evidence Type' selection when adding evidence

Issue - State: closed - Opened by malachig almost 10 years ago - 3 comments
Labels: enhancement

#41 - Suggested evidence item edits do not update on front end when commit is requested by admin

Issue - State: closed - Opened by bainscou almost 10 years ago - 1 comment
Labels: bug

#40 - API documentation page on site

Issue - State: closed - Opened by obigriffith almost 10 years ago - 1 comment
Labels: enhancement

#38 - Some of the Variant Groups have strange display behaviors

Issue - State: closed - Opened by kkrysiak almost 10 years ago - 1 comment
Labels: bug

#37 - Support clinical trial ID (clinicaltrials.gov) rather than just pubmed source

Issue - State: closed - Opened by kkrysiak almost 10 years ago - 2 comments
Labels: enhancement

#36 - Adding more information to the Drug column

Issue - State: closed - Opened by nspies13 almost 10 years ago - 5 comments
Labels: enhancement

#35 - Browsing by gene would be nice, clicking could open up top variant for that gene.

Issue - State: closed - Opened by nspies13 almost 10 years ago - 21 comments
Labels: enhancement

#34 - Fields in the Add Evidence page should be separated by required and not-required.

Issue - State: closed - Opened by nspies13 almost 10 years ago - 7 comments
Labels: question

#33 - Add Variant/Gene tab would be helpful, and can point to add evidence page.

Issue - State: closed - Opened by nspies13 almost 10 years ago - 1 comment

#32 - Add Evidence Item is currently buried

Issue - State: closed - Opened by nspies13 almost 10 years ago - 1 comment
Labels: enhancement

#31 - Auto-fill information from previous variant page when adding evidence items

Issue - State: closed - Opened by nspies13 almost 10 years ago - 1 comment

#30 - Remove minimum character requirement from add evidence page

Issue - State: closed - Opened by nspies13 almost 10 years ago - 1 comment
Labels: enhancement

#29 - Change "Login" text to a link

Issue - State: closed - Opened by kkrysiak almost 10 years ago
Labels: enhancement

#28 - Correct display of variant group description heading.

Issue - State: closed - Opened by kkrysiak almost 10 years ago - 3 comments
Labels: bug

#27 - Loaded evidence items pre-sorted by trust rating.

Issue - State: closed - Opened by nspies13 almost 10 years ago - 1 comment

#26 - Search for Variants in Quick Event Search

Issue - State: closed - Opened by nspies13 almost 10 years ago - 2 comments
Labels: enhancement

#25 - Clinical Significance is not displaying

Issue - State: closed - Opened by nspies13 almost 10 years ago - 3 comments

#24 - Display somatic/germline status from spreadsheets

Issue - State: closed - Opened by obigriffith almost 10 years ago

#23 - Add a page for the FAQ

Issue - State: closed - Opened by nspies13 almost 10 years ago

#22 - Include additional values on the evidence statement tables

Issue - State: closed - Opened by malachig almost 10 years ago
Labels: enhancement

#21 - Scrolling in table of evidence statements is extremely sensitive

Issue - State: closed - Opened by malachig almost 10 years ago - 2 comments

#20 - Add a Heading to Variant Summary

Issue - State: closed - Opened by kkrysiak almost 10 years ago - 1 comment
Labels: enhancement

#19 - Set an intuitive order for tables of evidence statements

Issue - State: closed - Opened by malachig almost 10 years ago - 1 comment

#17 - Add a cancel button to the edit gene/variant/evidence pages

Issue - State: closed - Opened by kkrysiak almost 10 years ago - 1 comment
Labels: enhancement

#16 - Swap "Gene" and "Variant" columns in browse view

Issue - State: closed - Opened by acoffman almost 10 years ago

#15 - Reorder evidence summary items

Issue - State: closed - Opened by obigriffith almost 10 years ago - 2 comments

#14 - Licensing

Issue - State: closed - Opened by acoffman almost 10 years ago - 2 comments

#13 - Evidence Item Grid for Variant Groups

Issue - State: closed - Opened by acoffman almost 10 years ago - 1 comment
Labels: enhancement

#12 - Variant Group Summaries

Issue - State: closed - Opened by acoffman almost 10 years ago - 2 comments
Labels: bug

#11 - Browse page should allow mousever on truncated fields to show full values

Issue - State: closed - Opened by acoffman almost 10 years ago - 1 comment

#10 - Edit buttons appear even when logged out

Issue - State: closed - Opened by acoffman almost 10 years ago - 1 comment

#9 - Display recent edit information next to entities that are editable

Issue - State: closed - Opened by acoffman almost 10 years ago - 1 comment
Labels: enhancement

#8 - Consolidate non-CIVIC gene information in right column

Issue - State: closed - Opened by acoffman almost 10 years ago - 1 comment
Labels: enhancement

#7 - Prepare a usage screencast

Issue - State: closed - Opened by acoffman almost 10 years ago - 2 comments
Labels: enhancement

#6 - Include star ratings explanation on static help page

Issue - State: closed - Opened by acoffman almost 10 years ago - 1 comment

#5 - Ditch infinite scrolling

Issue - State: closed - Opened by acoffman almost 10 years ago - 1 comment

#4 - Expand Search to include Diseases and Drugs

Issue - State: closed - Opened by acoffman almost 10 years ago
Labels: enhancement

#3 - Add glossary page

Issue - State: closed - Opened by bainscou almost 10 years ago - 1 comment
Labels: enhancement

#2 - Implement functionality that allows users to create new variant and evidence pages

Issue - State: closed - Opened by bainscou almost 10 years ago - 1 comment

#1 - Updates

Pull Request - State: closed - Opened by JonChristensen about 10 years ago - 4 comments