greenelab/xswap-manuscript issues and pull requests

#78 - Post journal publication tweaks

Pull Request - State: closed - Opened by dhimmel 10 months ago - 1 comment

#77 - Move caption to HTML

Pull Request - State: closed - Opened by zietzm 10 months ago - 1 comment

#76 - Add caption, bump table number

Pull Request - State: closed - Opened by zietzm 10 months ago - 1 comment

#75 - apply some Gigascience copyeditor changes

Pull Request - State: closed - Opened by dhimmel 11 months ago - 1 comment

#74 - Supplemental information

Pull Request - State: closed - Opened by zietzm 11 months ago - 3 comments

#73 - GigaScience prep & reference fine tuning

Pull Request - State: closed - Opened by dhimmel 11 months ago - 2 comments

#72 - GigaScience sections: affiliations, declarations, funding, contributions

Pull Request - State: closed - Opened by dhimmel 12 months ago - 7 comments

#71 - Add availability section as requested

Pull Request - State: closed - Opened by zietzm 12 months ago - 2 comments

#70 - Journal references & IndeCut evaluated permutations methods

Pull Request - State: closed - Opened by dhimmel about 1 year ago - 1 comment

#69 - Prepare for Gigascience publication

Issue - State: closed - Opened by dhimmel about 1 year ago - 20 comments

#68 - Update Rootstock 2023 09 21

Pull Request - State: closed - Opened by cgreene about 1 year ago - 1 comment

#67 - Revise manuscript

Pull Request - State: closed - Opened by zietzm about 1 year ago - 7 comments

#66 - Update manuscript in response to data request

Pull Request - State: closed - Opened by zietzm almost 2 years ago - 2 comments

#65 - Note figure provenance with HTML comments

Pull Request - State: closed - Opened by dhimmel almost 2 years ago - 1 comment

#64 - Data availability for GigaScience submission

Issue - State: closed - Opened by dhimmel almost 2 years ago - 3 comments

#63 - dhimmel's proofreading edits

Pull Request - State: closed - Opened by dhimmel about 2 years ago - 2 comments

#62 - Update Rootstock on 2022-11-12

Pull Request - State: closed - Opened by dhimmel about 2 years ago - 1 comment

#61 - PR: Merge Rootstock changes on 2020-03-05

Pull Request - State: closed - Opened by dhimmel over 4 years ago - 2 comments

#60 - Add thumbnail for manubot catalog

Pull Request - State: closed - Opened by zietzm about 5 years ago

#59 - Update this paper's thumbnail

Issue - State: closed - Opened by vincerubinetti about 5 years ago - 2 comments

#58 - Add thumbnail for Manubot catalog

Pull Request - State: closed - Opened by zietzm about 5 years ago

#57 - Address #54 substantial issues

Pull Request - State: closed - Opened by zietzm about 5 years ago - 20 comments

#56 - Add @bdsullivan authorship

Pull Request - State: closed - Opened by zietzm about 5 years ago - 3 comments

#55 - Suggestions from review

Pull Request - State: closed - Opened by zietzm about 5 years ago - 2 comments

#54 - Comments on manuscript

Issue - State: closed - Opened by bdsullivan over 5 years ago - 2 comments

#53 - Proofreads and addition to edge prior appendix

Pull Request - State: closed - Opened by kkloste over 5 years ago - 3 comments

#52 - suggested rewordings on edge prior in main body

Pull Request - State: closed - Opened by kkloste over 5 years ago - 1 comment

#51 - Edge Prior Appendix questions

Issue - State: closed - Opened by kkloste over 5 years ago - 1 comment

#50 - Formatting and caption edits

Pull Request - State: closed - Opened by dhimmel over 5 years ago - 3 comments

#49 - Update rootstock with AppVeyor support

Pull Request - State: closed - Opened by dhimmel over 5 years ago - 1 comment

#48 - Updates from dhimmel review

Pull Request - State: closed - Opened by zietzm over 5 years ago

#47 - Update implementation section

Pull Request - State: closed - Opened by zietzm over 5 years ago

#46 - Update subheaders

Pull Request - State: closed - Opened by zietzm over 5 years ago

#45 - Abstract revisions

Pull Request - State: closed - Opened by zietzm over 5 years ago

#44 - Add merged abstract

Pull Request - State: closed - Opened by zietzm over 5 years ago

#43 - Introduction edits

Pull Request - State: closed - Opened by dhimmel over 5 years ago - 1 comment

#42 - Abstract revisions

Pull Request - State: closed - Opened by dhimmel over 5 years ago - 4 comments

#41 - Update README

Pull Request - State: closed - Opened by zietzm over 5 years ago

#40 - Add explanation of figure in supplement

Pull Request - State: closed - Opened by zietzm over 5 years ago

#39 - Update results paragraph

Pull Request - State: closed - Opened by zietzm over 5 years ago - 1 comment

#38 - Revisions Based on Completed Read

Pull Request - State: closed - Opened by cgreene over 5 years ago

#37 - Results Paragraph Tuning

Issue - State: closed - Opened by cgreene over 5 years ago

#36 - Revisions throughout manuscript

Pull Request - State: closed - Opened by zietzm over 5 years ago

#35 - Add a few sentences on implementation

Pull Request - State: closed - Opened by zietzm over 5 years ago

#34 - Languange Formality

Issue - State: closed - Opened by cgreene over 5 years ago - 1 comment

#33 - Add conclusion

Pull Request - State: closed - Opened by zietzm over 5 years ago - 1 comment
Labels: Conclusion

#32 - Add discussion of example in results

Pull Request - State: closed - Opened by zietzm over 5 years ago
Labels: Discussion

#31 - Update figure references

Pull Request - State: closed - Opened by zietzm over 5 years ago

#30 - Add Results - example application of edge prior

Pull Request - State: closed - Opened by zietzm over 5 years ago
Labels: Results

#29 - Add Results subsection on degree

Pull Request - State: closed - Opened by zietzm over 5 years ago
Labels: Results

#28 - Methods section revisions

Pull Request - State: closed - Opened by zietzm over 5 years ago

#27 - Manuscript feedback from afar

Issue - State: closed - Opened by dhimmel over 5 years ago

#26 - Add subsection on edge prior results (task 3/3)

Pull Request - State: closed - Opened by zietzm over 5 years ago - 1 comment
Labels: Results

#25 - Add subsection on edge prior results (task 2/3)

Pull Request - State: closed - Opened by zietzm over 5 years ago
Labels: Results

#24 - Add subsection on edge prior results (task 1/3)

Pull Request - State: closed - Opened by zietzm over 5 years ago
Labels: Results

#23 - Add prediction task subsection

Pull Request - State: closed - Opened by zietzm over 5 years ago
Labels: Methods

#22 - Add degree-grouping subsection

Pull Request - State: closed - Opened by zietzm over 5 years ago
Labels: Methods

#21 - Add placeholders for figures

Pull Request - State: closed - Opened by zietzm over 5 years ago

#20 - Add implementation subsection

Pull Request - State: closed - Opened by zietzm over 5 years ago
Labels: Methods

#19 - Add Chris Williams authorship

Pull Request - State: closed - Opened by zietzm over 5 years ago

#18 - Naglem author

Pull Request - State: closed - Opened by naglem over 5 years ago

#17 - Add edge prior subsection and supplement

Pull Request - State: closed - Opened by zietzm over 5 years ago
Labels: Methods

#16 - Add XSwap subsection

Pull Request - State: closed - Opened by zietzm over 5 years ago
Labels: Methods

#15 - Add permutation subsection

Pull Request - State: closed - Opened by zietzm over 5 years ago
Labels: Methods

#14 - Add Kyle Kloster's authorship

Pull Request - State: closed - Opened by kkloste over 5 years ago - 7 comments

#13 - update authorship

Pull Request - State: closed - Opened by naglem over 5 years ago

#12 - Inviting contributors as manuscript coauthors

Issue - State: closed - Opened by dhimmel over 5 years ago - 2 comments

#11 - Add edge prediction subsection and supplement

Pull Request - State: closed - Opened by zietzm over 5 years ago - 1 comment
Labels: Discussion

#10 - Merge manubot updates on 2019-08-02

Pull Request - State: closed - Opened by zietzm over 5 years ago - 1 comment

#9 - Update Manubot and fix duplicate CI

Issue - State: closed - Opened by dhimmel over 5 years ago - 2 comments

#8 - add @cgreene author info

Pull Request - State: closed - Opened by cgreene over 5 years ago

#7 - Add node degree subsection

Pull Request - State: closed - Opened by zietzm over 5 years ago - 3 comments
Labels: Introduction

#6 - Update metadata and add Michael Zietz authorship

Pull Request - State: closed - Opened by zietzm over 5 years ago

#5 - Add Daniel Himmelstein authorship

Pull Request - State: closed - Opened by dhimmel over 5 years ago - 2 comments

#4 - Add abstract

Pull Request - State: closed - Opened by zietzm over 5 years ago

#3 - Add section headers

Pull Request - State: closed - Opened by zietzm over 5 years ago

#2 - Rough draft

Pull Request - State: closed - Opened by zietzm over 5 years ago - 3 comments

#1 - Relevant background literature

Issue - State: closed - Opened by dhimmel almost 6 years ago - 4 comments

GitHub / greenelab/xswap-manuscript issues and pull requests