greenelab/tybalt issues and pull requests

#100 - Add note to README about MAD genes

Pull Request - State: closed - Opened by gwaybio about 7 years ago - 1 comment

#100 - Add note to README about MAD genes

Pull Request - State: closed - Opened by gwaybio about 7 years ago - 1 comment

#99 - MAD: mean or median?

Issue - State: closed - Opened by enricoferrero about 7 years ago - 2 comments
Labels: stale

#99 - MAD: mean or median?

Issue - State: closed - Opened by enricoferrero about 7 years ago - 2 comments
Labels: stale

#98 - Adding Tybalt Class

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#98 - Adding Tybalt Class

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#97 - Top n - High Weight Selection Method

Issue - State: closed - Opened by gwaybio over 7 years ago - 1 comment
Labels: evaluation, stale

#97 - Top n - High Weight Selection Method

Issue - State: closed - Opened by gwaybio over 7 years ago - 1 comment
Labels: evaluation, stale

#96 - High Weigh Genes Outliers

Issue - State: closed - Opened by gwaybio over 7 years ago - 1 comment
Labels: evaluation, stale

#96 - High Weigh Genes Outliers

Issue - State: closed - Opened by gwaybio over 7 years ago - 1 comment
Labels: evaluation, stale

#95 - Adding High Weight Gene Analysis

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 2 comments
Labels: evaluation

#95 - Adding High Weight Gene Analysis

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 2 comments
Labels: evaluation

#94 - Update ADAGE model path

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#94 - Update ADAGE model path

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#93 - Updating how ADAGE weights are saved

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#93 - Updating how ADAGE weights are saved

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#92 - Latent Space Evaluations: Interpolation

Issue - State: closed - Opened by gwaybio over 7 years ago - 1 comment
Labels: evaluation, stale

#92 - Latent Space Evaluations: Interpolation

Issue - State: closed - Opened by gwaybio over 7 years ago - 1 comment
Labels: evaluation, stale

#91 - Latent Space Evaluations: Arithmetic

Issue - State: closed - Opened by gwaybio over 7 years ago - 1 comment
Labels: evaluation, stale

#91 - Latent Space Evaluations: Arithmetic

Issue - State: closed - Opened by gwaybio over 7 years ago - 1 comment
Labels: evaluation, stale

#90 - Pathway Coverage Evaluation

Issue - State: closed - Opened by gwaybio over 7 years ago - 3 comments
Labels: evaluation, stale

#90 - Pathway Coverage Evaluation

Issue - State: closed - Opened by gwaybio over 7 years ago - 3 comments
Labels: evaluation, stale

#89 - Add reconstruction based analysis

Issue - State: closed - Opened by gwaybio over 7 years ago - 1 comment
Labels: evaluation, stale

#89 - Add reconstruction based analysis

Issue - State: closed - Opened by gwaybio over 7 years ago - 1 comment
Labels: evaluation, stale

#88 - Add stale .yml

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#88 - Add stale .yml

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#87 - Assess per Cancer-Type reconstruction cost

Issue - State: closed - Opened by gwaybio over 7 years ago - 1 comment
Labels: training, stale

#87 - Assess per Cancer-Type reconstruction cost

Issue - State: closed - Opened by gwaybio over 7 years ago - 1 comment
Labels: training, stale

#86 - Establish naming convention for latent features

Issue - State: open - Opened by gwaybio over 7 years ago
Labels: enhancement

#86 - Establish naming convention for latent features

Issue - State: open - Opened by gwaybio over 7 years ago
Labels: enhancement

#85 - ADAGE gene weights

Issue - State: closed - Opened by gwaybio over 7 years ago - 1 comment
Labels: bug

#85 - ADAGE gene weights

Issue - State: closed - Opened by gwaybio over 7 years ago - 1 comment
Labels: bug

#84 - Latent feature comparison (Part II)

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#84 - Latent feature comparison (Part II)

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#83 - Latent feature comparison (Part I)

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 2 comments

#83 - Latent feature comparison (Part I)

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 2 comments

#82 - Adding full status matrix

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#82 - Adding full status matrix

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#81 - Add Two Hidden Layer Model

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#81 - Add Two Hidden Layer Model

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#80 - Replacing flat files with compression

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#80 - Replacing flat files with compression

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#79 - Merge Clean Update

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#79 - Merge Clean Update

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#78 - Compressing git LFS files

Issue - State: closed - Opened by gwaybio over 7 years ago

#78 - Compressing git LFS files

Issue - State: closed - Opened by gwaybio over 7 years ago

#77 - Add Parameter Sweep Figures and Logic from 300 feature model

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#77 - Add Parameter Sweep Figures and Logic from 300 feature model

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#76 - 300 feature hidden layer parameter sweep

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#76 - 300 feature hidden layer parameter sweep

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#75 - Adding Mutation Burden Data

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#75 - Adding Mutation Burden Data

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#74 - Refactoring Tybalt VAE Code

Issue - State: closed - Opened by gwaybio over 7 years ago - 1 comment
Labels: enhancement, training, evaluation

#74 - Refactoring Tybalt VAE Code

Issue - State: closed - Opened by gwaybio over 7 years ago - 1 comment
Labels: enhancement, training, evaluation

#73 - Add genes in model as text file

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#73 - Add genes in model as text file

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#72 - Adding Two Layer Parameter Sweep Figures

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#72 - Adding Two Layer Parameter Sweep Figures

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#71 - Adding Parameter Sweep for Two Hidden Layer Model / Reorganizing nbconverted Scripts

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 9 comments

#71 - Adding Parameter Sweep for Two Hidden Layer Model / Reorganizing nbconverted Scripts

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 9 comments

#70 - Add Mutation Data

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#70 - Add Mutation Data

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#69 - Extract High Weight Genes for All Features

Issue - State: closed - Opened by gwaybio over 7 years ago - 1 comment
Labels: evaluation, stale

#69 - Extract High Weight Genes for All Features

Issue - State: closed - Opened by gwaybio over 7 years ago - 1 comment
Labels: evaluation, stale

#68 - Add Pathway Analysis Script

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#68 - Add Pathway Analysis Script

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#67 - Methods threshold to 2.5 std dev

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 2 comments

#67 - Methods threshold to 2.5 std dev

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 2 comments

#66 - Push To Master: Extract weight matrix

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#66 - Push To Master: Extract weight matrix

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#65 - Push To Master: Feature activation examples for Paper Figures

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 2 comments

#65 - Push To Master: Feature activation examples for Paper Figures

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 2 comments

#64 - Output Gene Weight Matrix

Issue - State: closed - Opened by gwaybio over 7 years ago

#64 - Output Gene Weight Matrix

Issue - State: closed - Opened by gwaybio over 7 years ago

#63 - Push To Master: HGSC latent feature arithmetic

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 7 comments

#63 - Push To Master: HGSC latent feature arithmetic

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 7 comments

#62 - Push to Master: add sample activation plotting script

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#62 - Push to Master: add sample activation plotting script

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#61 - Push to Master: Add Preprint Info in README

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#61 - Push to Master: Add Preprint Info in README

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#60 - t-SNE activation plots

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#60 - t-SNE activation plots

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#59 - Push To Master: Add Optimal ADAGE training

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#59 - Push To Master: Add Optimal ADAGE training

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#58 - Incorporate ADAGE model parameter sweep

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 12 comments

#58 - Incorporate ADAGE model parameter sweep

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 12 comments

#57 - Separate Diagnostic Notebook

Issue - State: closed - Opened by gwaybio over 7 years ago - 2 comments
Labels: duplicate

#57 - Separate Diagnostic Notebook

Issue - State: closed - Opened by gwaybio over 7 years ago - 2 comments
Labels: duplicate

#56 - Push To Master: VAE

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 4 comments

#56 - Push To Master: VAE

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 4 comments

#55 - Push To Master: Add git lfs Data

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#54 - Push To Master: Add data management scripts

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 3 comments

#54 - Push To Master: Add data management scripts

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 3 comments

#53 - Push To Master: Parameter Sweep visualization

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 2 comments

#53 - Push To Master: Parameter Sweep visualization

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 2 comments

GitHub / greenelab/tybalt issues and pull requests