Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / greenelab/pancancer-evaluation issues and pull requests
#85 - Plot results for neural network experiments, across all genes
Pull Request -
State: closed - Opened by jjc2718 over 1 year ago
- 15 comments
#85 - Plot results for neural network experiments, across all genes
Pull Request -
State: closed - Opened by jjc2718 over 1 year ago
- 15 comments
#84 - Update sparsity figure + regenerate figshare data
Pull Request -
State: closed - Opened by jjc2718 over 1 year ago
- 5 comments
#84 - Update sparsity figure + regenerate figshare data
Pull Request -
State: closed - Opened by jjc2718 over 1 year ago
- 5 comments
#83 - Add README to optimizers sub-directory
Pull Request -
State: closed - Opened by jjc2718 over 1 year ago
#83 - Add README to optimizers sub-directory
Pull Request -
State: closed - Opened by jjc2718 over 1 year ago
#82 - Tweaks to figures for latest optimizer paper draft
Pull Request -
State: closed - Opened by jjc2718 over 1 year ago
- 1 comment
#82 - Tweaks to figures for latest optimizer paper draft
Pull Request -
State: closed - Opened by jjc2718 over 1 year ago
- 1 comment
#81 - SGD learning rate tuning + pytorch implementation, simulations
Pull Request -
State: closed - Opened by jjc2718 over 1 year ago
- 1 comment
#81 - SGD learning rate tuning + pytorch implementation, simulations
Pull Request -
State: closed - Opened by jjc2718 over 1 year ago
- 1 comment
#80 - Generate paper figures and supplementary data
Pull Request -
State: closed - Opened by jjc2718 almost 2 years ago
- 1 comment
#80 - Generate paper figures and supplementary data
Pull Request -
State: closed - Opened by jjc2718 almost 2 years ago
- 1 comment
#79 - Optimizer comparison on stratified cross-validation data
Pull Request -
State: closed - Opened by jjc2718 almost 2 years ago
- 1 comment
#79 - Optimizer comparison on stratified cross-validation data
Pull Request -
State: closed - Opened by jjc2718 almost 2 years ago
- 1 comment
#78 - Cancer type holdout performance analysis
Pull Request -
State: closed - Opened by jjc2718 almost 2 years ago
- 1 comment
#78 - Cancer type holdout performance analysis
Pull Request -
State: closed - Opened by jjc2718 almost 2 years ago
- 1 comment
#77 - Neural network parameter exploration experiments
Pull Request -
State: closed - Opened by jjc2718 almost 2 years ago
- 1 comment
#77 - Neural network parameter exploration experiments
Pull Request -
State: closed - Opened by jjc2718 almost 2 years ago
- 1 comment
#76 - TCGA -> CCLE neural network experiments
Pull Request -
State: closed - Opened by jjc2718 almost 2 years ago
- 2 comments
#76 - TCGA -> CCLE neural network experiments
Pull Request -
State: closed - Opened by jjc2718 almost 2 years ago
- 2 comments
#75 - CCLE -> TCGA prediction experiments
Pull Request -
State: closed - Opened by jjc2718 almost 2 years ago
- 1 comment
#75 - CCLE -> TCGA prediction experiments
Pull Request -
State: closed - Opened by jjc2718 almost 2 years ago
- 1 comment
#74 - Clean up LASSO plots + add shuffled baselines
Pull Request -
State: closed - Opened by jjc2718 almost 2 years ago
- 1 comment
#74 - Clean up LASSO plots + add shuffled baselines
Pull Request -
State: closed - Opened by jjc2718 almost 2 years ago
- 1 comment
#73 - More modular plotting code for LASSO range scripts
Issue -
State: open - Opened by jjc2718 almost 2 years ago
#73 - More modular plotting code for LASSO range scripts
Issue -
State: open - Opened by jjc2718 almost 2 years ago
#72 - TCGA -> CCLE mutation prediction experiments
Pull Request -
State: closed - Opened by jjc2718 almost 2 years ago
- 1 comment
#72 - TCGA -> CCLE mutation prediction experiments
Pull Request -
State: closed - Opened by jjc2718 almost 2 years ago
- 1 comment
#71 - Rerun mutation prediction + compare optimizers
Pull Request -
State: closed - Opened by jjc2718 about 2 years ago
- 1 comment
#71 - Rerun mutation prediction + compare optimizers
Pull Request -
State: closed - Opened by jjc2718 about 2 years ago
- 1 comment
#70 - Quantiles vs. linear "bins" in LASSO range box plots
Issue -
State: open - Opened by jjc2718 about 2 years ago
#70 - Quantiles vs. linear "bins" in LASSO range box plots
Issue -
State: open - Opened by jjc2718 about 2 years ago
#69 - Tweak LASSO coefficient range to be more uniform
Issue -
State: open - Opened by jjc2718 about 2 years ago
#69 - Tweak LASSO coefficient range to be more uniform
Issue -
State: open - Opened by jjc2718 about 2 years ago
#68 - Sex prediction results + add sex covariate for MSI prediction
Pull Request -
State: closed - Opened by jjc2718 about 2 years ago
- 1 comment
#68 - Sex prediction results + add sex covariate for MSI prediction
Pull Request -
State: closed - Opened by jjc2718 about 2 years ago
- 1 comment
#67 - Microsatellite instability prediction across cancer types
Pull Request -
State: closed - Opened by jjc2718 about 2 years ago
- 1 comment
#67 - Microsatellite instability prediction across cancer types
Pull Request -
State: closed - Opened by jjc2718 about 2 years ago
- 1 comment
#66 - Run LASSO range experiments for Vogelstein gene set
Pull Request -
State: closed - Opened by jjc2718 about 2 years ago
- 1 comment
#66 - Run LASSO range experiments for Vogelstein gene set
Pull Request -
State: closed - Opened by jjc2718 about 2 years ago
- 1 comment
#65 - Start working on LASSO experiments across all genes
Pull Request -
State: closed - Opened by jjc2718 about 2 years ago
- 1 comment
#65 - Start working on LASSO experiments across all genes
Pull Request -
State: closed - Opened by jjc2718 about 2 years ago
- 1 comment
#64 - LASSO penalty range/model size experiments
Pull Request -
State: closed - Opened by jjc2718 about 2 years ago
- 1 comment
#64 - LASSO penalty range/model size experiments
Pull Request -
State: closed - Opened by jjc2718 about 2 years ago
- 1 comment
#62 - CSD simulation experiments: parameter selection + domain addition
Pull Request -
State: closed - Opened by jjc2718 about 2 years ago
- 1 comment
#62 - CSD simulation experiments: parameter selection + domain addition
Pull Request -
State: closed - Opened by jjc2718 about 2 years ago
- 1 comment
#61 - Linear model with CSD loss layer - initial implementation
Pull Request -
State: closed - Opened by jjc2718 about 2 years ago
- 1 comment
#61 - Linear model with CSD loss layer - initial implementation
Pull Request -
State: closed - Opened by jjc2718 about 2 years ago
- 1 comment
#60 - Simulation of domain-specific data with shared signal
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 1 comment
#60 - Simulation of domain-specific data with shared signal
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 1 comment
#59 - Drug response regression, cancer type holdout experiments
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 2 comments
#59 - Drug response regression, cancer type holdout experiments
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 2 comments
#58 - Drug response regression, stratified by cancer type
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 1 comment
#58 - Drug response regression, stratified by cancer type
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 1 comment
#57 - Liquid vs. solid cancer experiments
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 2 comments
#57 - Liquid vs. solid cancer experiments
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 2 comments
#56 - CCLE drug response classification, stratified by cancer type
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 1 comment
#56 - CCLE drug response classification, stratified by cancer type
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 1 comment
#55 - Ridge regression and other small tweaks
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 1 comment
#55 - Ridge regression and other small tweaks
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 1 comment
#54 - CCLE mutation prediction
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 5 comments
#54 - CCLE mutation prediction
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 5 comments
#53 - Mutation prediction outstanding issues/updates
Issue -
State: open - Opened by jjc2718 over 2 years ago
#53 - Mutation prediction outstanding issues/updates
Issue -
State: open - Opened by jjc2718 over 2 years ago
#52 - F-statistic distribution heatmaps
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 1 comment
#52 - F-statistic distribution heatmaps
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 1 comment
#51 - CCLE data download script
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 1 comment
#51 - CCLE data download script
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 1 comment
#50 - Purity classification (above/below median)
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 1 comment
#50 - Purity classification (above/below median)
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 1 comment
#49 - Add more genes and random features baseline to cancer type experiments
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 1 comment
#49 - Add more genes and random features baseline to cancer type experiments
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 1 comment
#48 - Univariate feature selection, held-out cancer types
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 1 comment
#48 - Univariate feature selection, held-out cancer types
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 1 comment
#47 - Univariate feature selection for stratified CV
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 1 comment
#47 - Univariate feature selection for stratified CV
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 1 comment
#46 - Univariate correlation comparison
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 1 comment
#46 - Univariate correlation comparison
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 1 comment
#45 - Feature stability experiments
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 1 comment
#45 - Feature stability experiments
Pull Request -
State: closed - Opened by jjc2718 over 2 years ago
- 1 comment
#44 - Fix data download script
Pull Request -
State: closed - Opened by jjc2718 over 3 years ago
#44 - Fix data download script
Pull Request -
State: closed - Opened by jjc2718 over 3 years ago
#43 - Domain adaptation across cancer types
Pull Request -
State: closed - Opened by jjc2718 over 3 years ago
#43 - Domain adaptation across cancer types
Pull Request -
State: closed - Opened by jjc2718 over 3 years ago
#42 - Add cancer types to single-cancer mutation prediction models
Pull Request -
State: closed - Opened by jjc2718 about 4 years ago
- 2 comments
#42 - Add cancer types to single-cancer mutation prediction models
Pull Request -
State: closed - Opened by jjc2718 about 4 years ago
- 2 comments
#41 - Fix missing dimension reduction plots from previous PR
Pull Request -
State: closed - Opened by jjc2718 about 4 years ago
#41 - Fix missing dimension reduction plots from previous PR
Pull Request -
State: closed - Opened by jjc2718 about 4 years ago
#40 - Positive control/cancer type holdout experiments follow-up
Pull Request -
State: closed - Opened by jjc2718 about 4 years ago
- 2 comments
#40 - Positive control/cancer type holdout experiments follow-up
Pull Request -
State: closed - Opened by jjc2718 about 4 years ago
- 2 comments
#39 - Dimension reduction in 95% of held-out data case
Issue -
State: closed - Opened by jjc2718 about 4 years ago
Labels: research question
#39 - Dimension reduction in 95% of held-out data case
Issue -
State: closed - Opened by jjc2718 about 4 years ago
Labels: research question
#38 - Look further into label imbalance
Issue -
State: open - Opened by jjc2718 about 4 years ago
Labels: research question
#38 - Look further into label imbalance
Issue -
State: open - Opened by jjc2718 about 4 years ago
Labels: research question
#37 - New cross-validation scheme + more positive control experiments
Pull Request -
State: closed - Opened by jjc2718 about 4 years ago
- 2 comments
#37 - New cross-validation scheme + more positive control experiments
Pull Request -
State: closed - Opened by jjc2718 about 4 years ago
- 2 comments
#36 - "Flip labels" positive control experiments
Pull Request -
State: closed - Opened by jjc2718 over 4 years ago
#36 - "Flip labels" positive control experiments
Pull Request -
State: closed - Opened by jjc2718 over 4 years ago
#35 - Add MCC/F1 metric (in addition to ROC/PR)
Issue -
State: closed - Opened by jjc2718 over 4 years ago
- 2 comments
Labels: enhancement
#35 - Add MCC/F1 metric (in addition to ROC/PR)
Issue -
State: closed - Opened by jjc2718 over 4 years ago
- 2 comments
Labels: enhancement