greenelab/hgsc_subtypes issues and pull requests

#50 - Nanostring update 20181010

Pull Request - State: open - Opened by mollie-barnard over 6 years ago - 2 comments

#50 - Nanostring update 20181010

Pull Request - State: open - Opened by mollie-barnard over 6 years ago - 2 comments

#49 - Adding Custom Installation of WebGestaltR

Pull Request - State: closed - Opened by gwaybio over 6 years ago - 1 comment

#49 - Adding Custom Installation of WebGestaltR

Pull Request - State: closed - Opened by gwaybio over 6 years ago - 1 comment

#48 - Adding Nanostring Analysis Pipeline

Pull Request - State: closed - Opened by gwaybio over 6 years ago

#48 - Adding Nanostring Analysis Pipeline

Pull Request - State: closed - Opened by gwaybio over 6 years ago

#47 - Updating Directory Path

Pull Request - State: closed - Opened by gwaybio over 6 years ago

#47 - Updating Directory Path

Pull Request - State: closed - Opened by gwaybio over 6 years ago

#46 - Adding Module 7 Data and Results

Issue - State: open - Opened by gwaybio almost 7 years ago - 1 comment

#46 - Adding Module 7 Data and Results

Issue - State: open - Opened by gwaybio almost 7 years ago - 1 comment

#45 - Adding Nanostring module

Pull Request - State: closed - Opened by gwaybio almost 7 years ago - 2 comments

#45 - Adding Nanostring module

Pull Request - State: closed - Opened by gwaybio almost 7 years ago - 2 comments

#44 - Updating Data Inclusion to Remove TCGA low correlating outliers

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#44 - Updating Data Inclusion to Remove TCGA low correlating outliers

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#43 - Two low correlating TCGA sample removal

Issue - State: closed - Opened by gwaybio over 7 years ago

#43 - Two low correlating TCGA sample removal

Issue - State: closed - Opened by gwaybio over 7 years ago

#42 - Update Dataset Concordance Script and add Results

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#42 - Update Dataset Concordance Script and add Results

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#41 - getSamNames error

Issue - State: closed - Opened by CampanaOxidada over 7 years ago - 10 comments

#41 - getSamNames error

Issue - State: closed - Opened by CampanaOxidada over 7 years ago - 10 comments

#40 - Aaces data

Pull Request - State: closed - Opened by CampanaOxidada over 7 years ago - 3 comments

#40 - Aaces data

Pull Request - State: closed - Opened by CampanaOxidada over 7 years ago - 3 comments

#39 - downgrading R environment for mac compatibility

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#39 - downgrading R environment for mac compatibility

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#38 - darwin11 vs. darwin14

Issue - State: closed - Opened by CampanaOxidada over 7 years ago - 2 comments

#38 - darwin11 vs. darwin14

Issue - State: closed - Opened by CampanaOxidada over 7 years ago - 2 comments

#37 - remove checkpoint stragglers

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#37 - remove checkpoint stragglers

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#36 - remove checkpoint call from all scripts

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#36 - remove checkpoint call from all scripts

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#35 - Readme Hotfix

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#35 - Readme Hotfix

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#34 - Update Environment Management

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#34 - Update Environment Management

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#33 - Update README docs

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#33 - Update README docs

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#32 - unmet libR.dylib dependency in conda environment

Issue - State: closed - Opened by CampanaOxidada over 7 years ago - 2 comments

#32 - unmet libR.dylib dependency in conda environment

Issue - State: closed - Opened by CampanaOxidada over 7 years ago - 2 comments

#31 - MCPcounter analysis

Pull Request - State: closed - Opened by changt34x over 7 years ago - 2 comments

#31 - MCPcounter analysis

Pull Request - State: closed - Opened by changt34x over 7 years ago - 2 comments

#30 - k=2 clustering results

Issue - State: open - Opened by changt34x over 7 years ago - 2 comments
Labels: bug

#30 - k=2 clustering results

Issue - State: open - Opened by changt34x over 7 years ago - 2 comments
Labels: bug

#29 - ssGSEA Analysis

Pull Request - State: closed - Opened by changt34x over 7 years ago

#28 - local estimate repo

Issue - State: open - Opened by gwaybio over 7 years ago - 2 comments
Labels: help wanted

#28 - local estimate repo

Issue - State: open - Opened by gwaybio over 7 years ago - 2 comments
Labels: help wanted

#27 - Estimate analysis

Pull Request - State: closed - Opened by changt34x over 7 years ago - 10 comments

#26 - Running

Pull Request - State: closed - Opened by amyecampbell over 7 years ago

#26 - Running

Pull Request - State: closed - Opened by amyecampbell over 7 years ago

#25 - Move Low Correlating Sample Exclusion to Inclusion Script

Issue - State: open - Opened by gwaybio over 7 years ago
Labels: enhancement

#25 - Move Low Correlating Sample Exclusion to Inclusion Script

Issue - State: open - Opened by gwaybio over 7 years ago
Labels: enhancement

#24 - Update env

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#24 - Update env

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#23 - Nmf

Pull Request - State: closed - Opened by amyecampbell over 7 years ago

#23 - Nmf

Pull Request - State: closed - Opened by amyecampbell over 7 years ago

#22 - Debug update

Pull Request - State: closed - Opened by amyecampbell over 7 years ago

#22 - Debug update

Pull Request - State: closed - Opened by amyecampbell over 7 years ago

#21 - Update data inclusion

Pull Request - State: closed - Opened by amyecampbell over 7 years ago

#21 - Update data inclusion

Pull Request - State: closed - Opened by amyecampbell over 7 years ago

#20 - aaces-specific shell

Pull Request - State: closed - Opened by amyecampbell over 7 years ago - 3 comments

#20 - aaces-specific shell

Pull Request - State: closed - Opened by amyecampbell over 7 years ago - 3 comments

#19 - formatting//adding aaces path variable to LOADOVCA_Data.R

Pull Request - State: closed - Opened by amyecampbell over 7 years ago

#19 - formatting//adding aaces path variable to LOADOVCA_Data.R

Pull Request - State: closed - Opened by amyecampbell over 7 years ago

#18 - Update data inclusion

Pull Request - State: closed - Opened by amyecampbell over 7 years ago

#17 - Switching from HGNC to EntrezID

Issue - State: open - Opened by amyecampbell over 7 years ago

#17 - Switching from HGNC to EntrezID

Issue - State: open - Opened by amyecampbell over 7 years ago

#16 - Bug in Checkpoint Package

Issue - State: closed - Opened by gwaybio almost 8 years ago

#16 - Bug in Checkpoint Package

Issue - State: closed - Opened by gwaybio almost 8 years ago

#15 - Clustering

Pull Request - State: closed - Opened by amyecampbell almost 8 years ago

#15 - Clustering

Pull Request - State: closed - Opened by amyecampbell almost 8 years ago

#14 - environment dependency updates

Pull Request - State: closed - Opened by changt34x almost 8 years ago - 1 comment

#14 - environment dependency updates

Pull Request - State: closed - Opened by changt34x almost 8 years ago - 1 comment

#13 - Setting up environment

Pull Request - State: closed - Opened by gwaybio almost 8 years ago

#13 - Setting up environment

Pull Request - State: closed - Opened by gwaybio almost 8 years ago

#12 - chagnes to Mayo processing

Pull Request - State: closed - Opened by amyecampbell almost 8 years ago - 1 comment

#11 - Environment

Issue - State: closed - Opened by gwaybio almost 8 years ago - 1 comment

#10 - Inclusion --Update to get Mayo data from GEO, include AACES Ovarian

Pull Request - State: closed - Opened by amyecampbell almost 8 years ago

#9 - Adding micro-docker badge

Pull Request - State: closed - Opened by gwaybio over 8 years ago - 1 comment

#8 - Update Docker to Respond to checkpoint package

Pull Request - State: closed - Opened by gwaybio over 8 years ago - 1 comment

#7 - Checkpoint Package and Custom SAM subsetting

Pull Request - State: closed - Opened by gwaybio over 8 years ago - 5 comments

#6 - update README

Pull Request - State: closed - Opened by gwaybio over 8 years ago - 2 comments

#5 - Confirming Docker Functionality and Full Build Upload

Pull Request - State: closed - Opened by gwaybio over 8 years ago - 5 comments

#4 - adding confidence interval table, fix shuffle analysis, fix survival bug

Pull Request - State: closed - Opened by gwaybio almost 9 years ago

#3 - updating repo to k = 2 analysis

Pull Request - State: closed - Opened by gwaybio almost 9 years ago

#2 - Docker integration

Pull Request - State: closed - Opened by gwaybio almost 9 years ago

#1 - Update ANALYSIS.sh and associated files

Pull Request - State: closed - Opened by changt34x almost 9 years ago

GitHub / greenelab/hgsc_subtypes issues and pull requests