greenelab/generic-expression-patterns issues and pull requests

#68 - Community detection analysis on eADAGE correlation network

Pull Request - State: closed - Opened by jjc2718 almost 4 years ago - 6 comments

#68 - Community detection analysis on eADAGE correlation network

Pull Request - State: closed - Opened by jjc2718 almost 4 years ago - 6 comments

#67 - Update figures

Pull Request - State: closed - Opened by ajlee21 almost 4 years ago - 2 comments

#67 - Update figures

Pull Request - State: closed - Opened by ajlee21 almost 4 years ago - 2 comments

#66 - Add new volcano plots

Pull Request - State: closed - Opened by ajlee21 almost 4 years ago - 2 comments

#66 - Add new volcano plots

Pull Request - State: closed - Opened by ajlee21 almost 4 years ago - 2 comments

#65 - Create G-G network visualization

Pull Request - State: closed - Opened by ajlee21 about 4 years ago - 1 comment

#65 - Create G-G network visualization

Pull Request - State: closed - Opened by ajlee21 about 4 years ago - 1 comment

#64 - Train multiplier on pseudomonas dataset

Pull Request - State: closed - Opened by ajlee21 about 4 years ago

#64 - Train multiplier on pseudomonas dataset

Pull Request - State: closed - Opened by ajlee21 about 4 years ago

#63 - Add scaler transform files to repo

Pull Request - State: closed - Opened by ajlee21 about 4 years ago

#63 - Add scaler transform files to repo

Pull Request - State: closed - Opened by ajlee21 about 4 years ago

#62 - Update enrichment method to use array data and make new figure

Pull Request - State: closed - Opened by ajlee21 about 4 years ago - 1 comment

#62 - Update enrichment method to use array data and make new figure

Pull Request - State: closed - Opened by ajlee21 about 4 years ago - 1 comment

#61 - Update comparison of gene ranks across experiments

Pull Request - State: closed - Opened by ajlee21 about 4 years ago

#61 - Update comparison of gene ranks across experiments

Pull Request - State: closed - Opened by ajlee21 about 4 years ago

#60 - Add additional stats columns and redo analysis

Pull Request - State: closed - Opened by ajlee21 about 4 years ago

#60 - Add additional stats columns and redo analysis

Pull Request - State: closed - Opened by ajlee21 about 4 years ago

#59 - Create volcano plot for E-GEOD-17179

Pull Request - State: closed - Opened by ajlee21 about 4 years ago

#59 - Create volcano plot for E-GEOD-17179

Pull Request - State: closed - Opened by ajlee21 about 4 years ago

#58 - Add pseudomonas LV analysis

Pull Request - State: closed - Opened by ajlee21 about 4 years ago

#58 - Add pseudomonas LV analysis

Pull Request - State: closed - Opened by ajlee21 about 4 years ago

#57 - Pseudomonas validation

Pull Request - State: closed - Opened by ajlee21 about 4 years ago - 1 comment

#57 - Pseudomonas validation

Pull Request - State: closed - Opened by ajlee21 about 4 years ago - 1 comment

#56 - Change normalized data's URL from AWS S3 to Google Storage

Pull Request - State: closed - Opened by dongbohu about 4 years ago - 1 comment

#56 - Change normalized data's URL from AWS S3 to Google Storage

Pull Request - State: closed - Opened by dongbohu about 4 years ago - 1 comment

#55 - Clean up and redo Pseudomonas analysis

Pull Request - State: closed - Opened by ajlee21 about 4 years ago

#55 - Clean up and redo Pseudomonas analysis

Pull Request - State: closed - Opened by ajlee21 about 4 years ago

#54 - Add enrichment analyses

Pull Request - State: closed - Opened by ajlee21 about 4 years ago

#54 - Add enrichment analyses

Pull Request - State: closed - Opened by ajlee21 about 4 years ago

#53 - Compare generic genes across two template experiments

Pull Request - State: closed - Opened by ajlee21 about 4 years ago - 1 comment

#53 - Compare generic genes across two template experiments

Pull Request - State: closed - Opened by ajlee21 about 4 years ago - 1 comment

#52 - Add new bladder cancer result files

Pull Request - State: closed - Opened by ajlee21 about 4 years ago - 1 comment

#52 - Add new bladder cancer result files

Pull Request - State: closed - Opened by ajlee21 about 4 years ago - 1 comment

#51 - Redo bladder cancer analysis

Pull Request - State: closed - Opened by ajlee21 about 4 years ago - 3 comments

#51 - Redo bladder cancer analysis

Pull Request - State: closed - Opened by ajlee21 about 4 years ago - 3 comments

#50 - Run new experiment through pipeline

Pull Request - State: closed - Opened by ajlee21 about 4 years ago - 1 comment

#50 - Run new experiment through pipeline

Pull Request - State: closed - Opened by ajlee21 about 4 years ago - 1 comment

#49 - Add multiple enrichment methods

Pull Request - State: closed - Opened by ajlee21 about 4 years ago

#49 - Add multiple enrichment methods

Pull Request - State: closed - Opened by ajlee21 about 4 years ago

#48 - Make volcano plots for representative simulated experiments

Pull Request - State: closed - Opened by ajlee21 about 4 years ago

#48 - Make volcano plots for representative simulated experiments

Pull Request - State: closed - Opened by ajlee21 about 4 years ago

#47 - Make manuscript-ready figures

Pull Request - State: closed - Opened by ajlee21 about 4 years ago - 8 comments

#47 - Make manuscript-ready figures

Pull Request - State: closed - Opened by ajlee21 about 4 years ago - 8 comments

#46 - Minor update to readme and figure

Pull Request - State: closed - Opened by ajlee21 about 4 years ago

#46 - Minor update to readme and figure

Pull Request - State: closed - Opened by ajlee21 about 4 years ago

#45 - Update multiplier analysis

Pull Request - State: closed - Opened by ajlee21 over 4 years ago - 2 comments

#45 - Update multiplier analysis

Pull Request - State: closed - Opened by ajlee21 over 4 years ago - 2 comments

#44 - Update ponyo version

Pull Request - State: closed - Opened by ajlee21 over 4 years ago - 2 comments

#44 - Update ponyo version

Pull Request - State: closed - Opened by ajlee21 over 4 years ago - 2 comments

#43 - Add multiplier analysis

Pull Request - State: closed - Opened by ajlee21 over 4 years ago - 1 comment

#42 - Address some issues

Pull Request - State: closed - Opened by ajlee21 over 4 years ago

#42 - Address some issues

Pull Request - State: closed - Opened by ajlee21 over 4 years ago

#41 - Add GSEA to Pseudomonas analysis notebook

Pull Request - State: closed - Opened by ajlee21 over 4 years ago

#41 - Add GSEA to Pseudomonas analysis notebook

Pull Request - State: closed - Opened by ajlee21 over 4 years ago

#40 - Update github actions tests

Pull Request - State: closed - Opened by ajlee21 over 4 years ago - 4 comments

#40 - Update github actions tests

Pull Request - State: closed - Opened by ajlee21 over 4 years ago - 4 comments

#39 - Update pseudomonas analysis notebooks using modules

Pull Request - State: closed - Opened by ajlee21 over 4 years ago

#39 - Update pseudomonas analysis notebooks using modules

Pull Request - State: closed - Opened by ajlee21 over 4 years ago

#38 - Recount2 project id missing data

Issue - State: closed - Opened by ajlee21 over 4 years ago
Labels: wontfix

#38 - Recount2 project id missing data

Issue - State: closed - Opened by ajlee21 over 4 years ago
Labels: wontfix

#37 - Run VAE training on screen when running remotely

Issue - State: open - Opened by ajlee21 over 4 years ago - 1 comment

#37 - Run VAE training on screen when running remotely

Issue - State: open - Opened by ajlee21 over 4 years ago - 1 comment

#36 - Rerun recount2 notebooks

Pull Request - State: closed - Opened by ajlee21 over 4 years ago

#36 - Rerun recount2 notebooks

Pull Request - State: closed - Opened by ajlee21 over 4 years ago

#34 - Add analysis notebooks using Rani dataset

Pull Request - State: closed - Opened by ajlee21 over 4 years ago

#33 - Add notebook to visualize E-GEOD-33245 trends

Pull Request - State: closed - Opened by ajlee21 over 4 years ago

#33 - Add notebook to visualize E-GEOD-33245 trends

Pull Request - State: closed - Opened by ajlee21 over 4 years ago

#32 - Higher precision in compendium file?

Issue - State: closed - Opened by dongbohu over 4 years ago - 1 comment

#32 - Higher precision in compendium file?

Issue - State: closed - Opened by dongbohu over 4 years ago - 1 comment

#29 - Remove "get_wd()" and "set_wd()" when downloading recount2 data

Issue - State: closed - Opened by dongbohu over 4 years ago - 2 comments

#29 - Remove "get_wd()" and "set_wd()" when downloading recount2 data

Issue - State: closed - Opened by dongbohu over 4 years ago - 2 comments

#28 - "np.random.seed()" in human_anlysis/2_identify_generic_genes_pathways.ipynb

Issue - State: closed - Opened by dongbohu over 4 years ago - 2 comments

GitHub / greenelab/generic-expression-patterns issues and pull requests