Ecosyste.ms: Issues

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GitHub / greenelab/gea_community_detection issues and pull requests

#36 - minor correction

Pull Request - State: closed - Opened by cgreene about 7 years ago

#36 - minor correction

Pull Request - State: closed - Opened by cgreene about 7 years ago

#35 - updating for labeling for percent path and percent additional genes

Pull Request - State: closed - Opened by lharr over 7 years ago - 2 comments

#35 - updating for labeling for percent path and percent additional genes

Pull Request - State: closed - Opened by lharr over 7 years ago - 2 comments

#34 - Add zenodo badge to readme

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#33 - Update figs folder

Pull Request - State: closed - Opened by lharr over 7 years ago - 2 comments

#33 - Update figs folder

Pull Request - State: closed - Opened by lharr over 7 years ago - 2 comments

#32 - Updating for capitalization

Pull Request - State: closed - Opened by lharr over 7 years ago

#32 - Updating for capitalization

Pull Request - State: closed - Opened by lharr over 7 years ago

#31 - Update markdown

Pull Request - State: closed - Opened by lharr over 7 years ago

#31 - Update markdown

Pull Request - State: closed - Opened by lharr over 7 years ago

#30 - Linting Updates to Most Files

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 2 comments

#30 - Linting Updates to Most Files

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 2 comments

#29 - Add note about Data/all_iterations.csv and results

Issue - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#29 - Add note about Data/all_iterations.csv and results

Issue - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#28 - Updating so ALL_GENES and PATH_GENES variables for enrichment_main an…

Pull Request - State: closed - Opened by lharr over 7 years ago - 1 comment

#28 - Updating so ALL_GENES and PATH_GENES variables for enrichment_main an…

Pull Request - State: closed - Opened by lharr over 7 years ago - 1 comment

#27 - adding bioconda and r packages to conda

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#26 - Assign Zenodo DOI

Issue - State: open - Opened by gwaybio over 7 years ago - 8 comments

#25 - Make Repo Public

Issue - State: closed - Opened by gwaybio over 7 years ago

#24 - Update ontology prep

Pull Request - State: closed - Opened by gwaybio over 7 years ago

#23 - Adding conda environment

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 3 comments

#22 - Update flowchart

Pull Request - State: closed - Opened by lharr over 7 years ago

#21 - Change txt to dat file

Pull Request - State: closed - Opened by lharr over 7 years ago - 1 comment

#20 - add unzipping step to data download

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 1 comment

#19 - Define Environment File

Issue - State: closed - Opened by gwaybio over 7 years ago - 2 comments

#18 - Update Data Download

Pull Request - State: closed - Opened by gwaybio over 7 years ago - 2 comments

#17 - Data Download Instructions

Issue - State: closed - Opened by gwaybio over 7 years ago - 15 comments

#16 - Add Topics and a Description

Issue - State: closed - Opened by gwaybio over 7 years ago - 3 comments

#15 - add BSD 3-clause license

Issue - State: closed - Opened by cgreene over 7 years ago - 4 comments

#14 - Adding analysis bash script

Pull Request - State: closed - Opened by lharr over 7 years ago - 16 comments

#13 - Updated figs for F1, FPR, and FNR

Pull Request - State: closed - Opened by lharr over 7 years ago - 4 comments

#12 - updated for overlap genes

Pull Request - State: closed - Opened by lharr almost 8 years ago

#11 - entrezid conversion and hgsc analysis

Pull Request - State: closed - Opened by lharr almost 8 years ago

#10 - add hgsc differentially expressed genes

Pull Request - State: closed - Opened by gwaybio almost 8 years ago

#9 - Variable tweaks to enrichment, main and new control script

Pull Request - State: closed - Opened by lharr about 8 years ago - 4 comments

#8 - gitignore

Pull Request - State: closed - Opened by lharr about 8 years ago - 20 comments

#7 - ggplot figs in R

Pull Request - State: closed - Opened by lharr about 8 years ago - 2 comments

#6 - Possible fix to enrichment bug

Pull Request - State: closed - Opened by lharr about 8 years ago - 1 comment

#5 - add .gitignore

Issue - State: closed - Opened by gwaybio about 8 years ago - 1 comment

#4 - Updated main and enrichment

Pull Request - State: closed - Opened by lharr over 8 years ago - 15 comments

#3 - calculates power and false positive differently

Pull Request - State: closed - Opened by lharr over 8 years ago - 19 comments

#2 - Second review

Pull Request - State: closed - Opened by lharr over 8 years ago

#1 - first commit

Pull Request - State: closed - Opened by lharr over 8 years ago - 18 comments