Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / greenelab/gcb535 issues and pull requests

#232 - scRNA-Seq: Set kernel to "R (R-project)" not "R (sagemath)"

Issue - State: open - Opened by bvoight almost 6 years ago

#231 - Depreciated code: sklearn.cross_validation

Issue - State: open - Opened by bvoight almost 6 years ago - 1 comment

#229 - Gene Expression III: listing "top 10 genes" and top probes

Issue - State: open - Opened by bvoight almost 6 years ago

#228 - Gene Expression I: getGEOSuppFiles(GEO="GSE35961") no longer works

Issue - State: closed - Opened by bvoight almost 6 years ago - 1 comment

#227 - Gene Expression I: "mice", not "subjects'

Issue - State: closed - Opened by bvoight almost 6 years ago - 1 comment

#226 - Gene Expression I: fix prelab summary for example-pheno.csv

Issue - State: closed - Opened by bvoight almost 6 years ago - 1 comment

#225 - 12_ENCODE-II: clarity on files to select

Issue - State: open - Opened by bvoight almost 6 years ago

#225 - 12_ENCODE-II: clarity on files to select

Issue - State: open - Opened by bvoight almost 6 years ago

#224 - 12_ENCODE_prelab: get .pdf of papers on canvas or downloadable

Issue - State: open - Opened by bvoight almost 6 years ago

#223 - 12_ENCODE: fix mark names to match referenced papers

Issue - State: open - Opened by bvoight almost 6 years ago

#222 - Broad issue: "Have students think more"

Issue - State: open - Opened by bvoight almost 6 years ago - 1 comment

#221 - Syllabus: fix broken links for plagiarism at end

Issue - State: closed - Opened by bvoight almost 6 years ago - 2 comments

#220 - Change HW number from 13 to 7 (Alignment) - FASTA file

Issue - State: open - Opened by cgreene about 6 years ago

#220 - Change HW number from 13 to 7 (Alignment) - FASTA file

Issue - State: open - Opened by cgreene about 6 years ago

#219 - Motif I HW Answer Updates

Issue - State: open - Opened by genestats about 6 years ago

#217 - Add SRR info to Syllabus

Issue - State: closed - Opened by bvoight about 6 years ago - 1 comment

#216 - UNIX-II HW: note that curl will not follow redirect on file

Issue - State: open - Opened by bvoight about 6 years ago - 2 comments

#216 - UNIX-II HW: note that curl will not follow redirect on file

Issue - State: open - Opened by bvoight about 6 years ago - 2 comments

#213 - Unix II prelab typo

Issue - State: closed - Opened by jingyaq about 6 years ago - 1 comment
Labels: documentation

#212 - Unix II: Link to data file is broken

Issue - State: closed - Opened by jingyaq about 6 years ago - 2 comments

#212 - Unix II: Link to data file is broken

Issue - State: closed - Opened by jingyaq about 6 years ago - 2 comments

#211 - Databases Q8: clarify that it's length of mature mRNA transcript without introns

Issue - State: open - Opened by jingyaq about 6 years ago
Labels: documentation

#211 - Databases Q8: clarify that it's length of mature mRNA transcript without introns

Issue - State: open - Opened by jingyaq about 6 years ago
Labels: documentation

#210 - Databases: Check numbering of problems (Q5 is listed twice?)

Issue - State: open - Opened by bvoight about 6 years ago

#210 - Databases: Check numbering of problems (Q5 is listed twice?)

Issue - State: open - Opened by bvoight about 6 years ago

#209 - Make keys folder order match course

Issue - State: closed - Opened by cgreene about 6 years ago - 1 comment

#209 - Make keys folder order match course

Issue - State: closed - Opened by cgreene about 6 years ago - 1 comment

#208 - Update office hours table (note absences)

Issue - State: closed - Opened by cgreene about 6 years ago - 1 comment
Labels: MISSION CRITICAL

#208 - Update office hours table (note absences)

Issue - State: closed - Opened by cgreene about 6 years ago - 1 comment
Labels: MISSION CRITICAL

#207 - Update course calendar

Issue - State: closed - Opened by cgreene about 6 years ago - 1 comment
Labels: MISSION CRITICAL

#207 - Update course calendar

Issue - State: closed - Opened by cgreene about 6 years ago - 1 comment
Labels: MISSION CRITICAL

#206 - Prelab Variation I: broken link

Issue - State: open - Opened by bvoight over 6 years ago

#206 - Prelab Variation I: broken link

Issue - State: open - Opened by bvoight over 6 years ago

#205 - Convert Markdown Course Calendar to .ics events

Issue - State: closed - Opened by cgreene over 6 years ago - 2 comments

#204 - Written Report: clarify References

Issue - State: closed - Opened by bvoight almost 7 years ago - 1 comment

#203 - Canvas

Issue - State: closed - Opened by cgreene almost 7 years ago

#203 - Canvas

Issue - State: closed - Opened by cgreene almost 7 years ago

#202 - ML Code confusing

Issue - State: open - Opened by cgreene almost 7 years ago

#202 - ML Code confusing

Issue - State: open - Opened by cgreene almost 7 years ago

#201 - ML: Explain datasets

Issue - State: open - Opened by cgreene almost 7 years ago

#201 - ML: Explain datasets

Issue - State: open - Opened by cgreene almost 7 years ago

#200 - ML: More types of classifiers

Issue - State: open - Opened by cgreene almost 7 years ago

#200 - ML: More types of classifiers

Issue - State: open - Opened by cgreene almost 7 years ago

#199 - Categorize days by attendance suggestion level

Issue - State: closed - Opened by cgreene almost 7 years ago - 1 comment

#198 - Genetic Variation 2 lacks an images directory.

Issue - State: closed - Opened by cgreene almost 7 years ago - 2 comments

#198 - Genetic Variation 2 lacks an images directory.

Issue - State: closed - Opened by cgreene almost 7 years ago - 2 comments

#197 - BrainArray Custom CDF added to gene expression module

Issue - State: open - Opened by cgreene almost 7 years ago

#197 - BrainArray Custom CDF added to gene expression module

Issue - State: open - Opened by cgreene almost 7 years ago

#196 - Prelim Proposal: Have students actually *Look* at their proposed data

Issue - State: closed - Opened by bvoight almost 7 years ago - 1 comment

#196 - Prelim Proposal: Have students actually *Look* at their proposed data

Issue - State: closed - Opened by bvoight almost 7 years ago - 1 comment

#195 - RNA-Seq "Overview" / Preparation document

Issue - State: open - Opened by bvoight almost 7 years ago

#195 - RNA-Seq "Overview" / Preparation document

Issue - State: open - Opened by bvoight almost 7 years ago

#194 - ML4 & 5 instructions

Issue - State: closed - Opened by kelsj almost 7 years ago - 1 comment

#194 - ML4 & 5 instructions

Issue - State: closed - Opened by kelsj almost 7 years ago - 1 comment

#193 - Genetic Variation I Q15

Issue - State: closed - Opened by cgreene almost 7 years ago - 1 comment

#193 - Genetic Variation I Q15

Issue - State: closed - Opened by cgreene almost 7 years ago - 1 comment

#192 - ML5 should now include a link to "the combinator"

Issue - State: closed - Opened by cgreene almost 7 years ago - 2 comments

#192 - ML5 should now include a link to "the combinator"

Issue - State: closed - Opened by cgreene almost 7 years ago - 2 comments

#191 - Slider bar for accuracies in ML5 form

Issue - State: closed - Opened by cgreene almost 7 years ago - 1 comment

#191 - Slider bar for accuracies in ML5 form

Issue - State: closed - Opened by cgreene almost 7 years ago - 1 comment

#190 - Gene Expression III: are there actually NA entries in this list?

Issue - State: closed - Opened by bvoight almost 7 years ago - 1 comment
Labels: code, documentation

#190 - Gene Expression III: are there actually NA entries in this list?

Issue - State: closed - Opened by bvoight almost 7 years ago - 1 comment
Labels: code, documentation

#189 - Gene Expression III: "annot" on question 6

Issue - State: closed - Opened by bvoight almost 7 years ago - 1 comment
Labels: documentation

#188 - GeneExpression (I,II): Spec of Phenotype file, extra cel files, "appropriate" cel files

Issue - State: closed - Opened by bvoight almost 7 years ago - 2 comments
Labels: documentation

#187 - Update ML discussion section for Day 5

Issue - State: open - Opened by cgreene almost 7 years ago - 2 comments
Labels: documentation

#187 - Update ML discussion section for Day 5

Issue - State: open - Opened by cgreene almost 7 years ago - 2 comments
Labels: documentation

#186 - ChIP-Seq-II Homework

Issue - State: closed - Opened by cgreene almost 7 years ago
Labels: documentation

#186 - ChIP-Seq-II Homework

Issue - State: closed - Opened by cgreene almost 7 years ago
Labels: documentation

#185 - Interpretation of P value in In_Class_R_2

Issue - State: closed - Opened by gwaybio almost 7 years ago
Labels: documentation

#185 - Interpretation of P value in In_Class_R_2

Issue - State: closed - Opened by gwaybio almost 7 years ago
Labels: documentation

#184 - ENCODE - II : remind them to use -u flag for questions #3, #4

Issue - State: closed - Opened by bvoight almost 7 years ago
Labels: documentation

#184 - ENCODE - II : remind them to use -u flag for questions #3, #4

Issue - State: closed - Opened by bvoight almost 7 years ago
Labels: documentation

#183 - for R - I: +10 Hufflepuff Points

Issue - State: open - Opened by bvoight almost 7 years ago
Labels: code, documentation

#183 - for R - I: +10 Hufflepuff Points

Issue - State: open - Opened by bvoight almost 7 years ago
Labels: code, documentation

#182 - Teach symlinking in unix

Issue - State: closed - Opened by cgreene almost 7 years ago - 1 comment
Labels: enhancement, documentation, MISSION CRITICAL

#182 - Teach symlinking in unix

Issue - State: closed - Opened by cgreene almost 7 years ago - 1 comment
Labels: enhancement, documentation, MISSION CRITICAL

#181 - ENCODE I - Data Files Folder

Issue - State: open - Opened by gwaybio almost 7 years ago - 2 comments
Labels: administrative, code, MISSION CRITICAL

#181 - ENCODE I - Data Files Folder

Issue - State: open - Opened by gwaybio almost 7 years ago - 2 comments
Labels: administrative, code, MISSION CRITICAL

#180 - ENCODE-II: says mm9, but files available are mm10

Issue - State: closed - Opened by bvoight almost 7 years ago - 2 comments
Labels: documentation

#180 - ENCODE-II: says mm9, but files available are mm10

Issue - State: closed - Opened by bvoight almost 7 years ago - 2 comments
Labels: documentation

#179 - sort command with large bed file (ENCODE-I)

Issue - State: open - Opened by bvoight almost 7 years ago - 1 comment
Labels: administrative, code, documentation, MISSION CRITICAL

#179 - sort command with large bed file (ENCODE-I)

Issue - State: open - Opened by bvoight almost 7 years ago - 1 comment
Labels: administrative, code, documentation, MISSION CRITICAL

#178 - Phylogenetics reword

Issue - State: closed - Opened by kelsj about 7 years ago - 2 comments
Labels: documentation

#177 - pairwise matrix in phylogenetics w/ twist sequences

Issue - State: closed - Opened by cgreene about 7 years ago
Labels: documentation

#177 - pairwise matrix in phylogenetics w/ twist sequences

Issue - State: closed - Opened by cgreene about 7 years ago
Labels: documentation

#176 - Chip-Seq I: bedtools genomecov killed

Issue - State: open - Opened by bvoight about 7 years ago - 2 comments
Labels: bug, administrative, documentation

#176 - Chip-Seq I: bedtools genomecov killed

Issue - State: open - Opened by bvoight about 7 years ago - 2 comments
Labels: bug, administrative, documentation

#175 - motif 1 Q7 re-word

Issue - State: closed - Opened by kelsj about 7 years ago - 1 comment
Labels: documentation

#175 - motif 1 Q7 re-word

Issue - State: closed - Opened by kelsj about 7 years ago - 1 comment
Labels: documentation

#174 - ENCODE file downloads

Issue - State: closed - Opened by bvoight about 7 years ago - 1 comment
Labels: code

#174 - ENCODE file downloads

Issue - State: closed - Opened by bvoight about 7 years ago - 1 comment
Labels: code

#173 - Alignment Typos

Issue - State: closed - Opened by gwaybio about 7 years ago - 1 comment
Labels: documentation

#173 - Alignment Typos

Issue - State: closed - Opened by gwaybio about 7 years ago - 1 comment
Labels: documentation

#172 - Motif III: Clarify what is "an unnecessary file" for the homework

Issue - State: closed - Opened by bvoight about 7 years ago - 1 comment
Labels: documentation