Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / greenelab/connectivity-search-analyses issues and pull requests
#100 - HetMat permutations: export hetio.hetnet graphs to hetmats
Pull Request -
State: closed - Opened by dhimmel over 6 years ago
#99 - Update acknowledgements with Pfizer support
Pull Request -
State: closed - Opened by dhimmel over 6 years ago
- 2 comments
#99 - Update acknowledgements with Pfizer support
Pull Request -
State: closed - Opened by dhimmel over 6 years ago
- 2 comments
#98 - Travis CI: pin miniconda & updated conda usage
Pull Request -
State: closed - Opened by dhimmel over 6 years ago
#98 - Travis CI: pin miniconda & updated conda usage
Pull Request -
State: closed - Opened by dhimmel over 6 years ago
#97 - The hetmat awakens: a directory-structure and module for matrix-storage of hetnets
Pull Request -
State: closed - Opened by dhimmel over 6 years ago
#97 - The hetmat awakens: a directory-structure and module for matrix-storage of hetnets
Pull Request -
State: closed - Opened by dhimmel over 6 years ago
#96 - Degree-grouped permutations
Pull Request -
State: closed - Opened by zietzm over 6 years ago
- 5 comments
#96 - Degree-grouped permutations
Pull Request -
State: closed - Opened by zietzm over 6 years ago
- 5 comments
#95 - Alternative graph data structures
Issue -
State: closed - Opened by zietzm over 6 years ago
- 5 comments
#95 - Alternative graph data structures
Issue -
State: closed - Opened by zietzm over 6 years ago
- 5 comments
#94 - Add dtype functionality in DWPC computation
Pull Request -
State: closed - Opened by zietzm over 6 years ago
- 2 comments
#93 - Suggest candidate causal genes for each pQTL
Pull Request -
State: closed - Opened by dhimmel over 6 years ago
#93 - Suggest candidate causal genes for each pQTL
Pull Request -
State: closed - Opened by dhimmel over 6 years ago
#92 - Add missing ignore & remove unused import
Pull Request -
State: closed - Opened by dhimmel over 6 years ago
#92 - Add missing ignore & remove unused import
Pull Request -
State: closed - Opened by dhimmel over 6 years ago
#91 - Estimate disk storage needed for all DWPC matrices
Pull Request -
State: closed - Opened by zietzm over 6 years ago
- 6 comments
#91 - Estimate disk storage needed for all DWPC matrices
Pull Request -
State: closed - Opened by zietzm over 6 years ago
- 6 comments
#90 - Scipy sparse vector with memory map
Pull Request -
State: closed - Opened by zietzm over 6 years ago
#90 - Scipy sparse vector with memory map
Pull Request -
State: closed - Opened by zietzm over 6 years ago
#89 - Add setup.py
Pull Request -
State: closed - Opened by zietzm over 6 years ago
- 5 comments
#88 - Using hetmech outside repository
Issue -
State: closed - Opened by gwaybio over 6 years ago
- 7 comments
#88 - Using hetmech outside repository
Issue -
State: closed - Opened by gwaybio over 6 years ago
- 7 comments
#87 - Remove duplicate functionality with hetio.matrix
Pull Request -
State: closed - Opened by dhimmel over 6 years ago
#86 - Adding entrez id column to pqtl.tsv
Pull Request -
State: closed - Opened by naglem over 6 years ago
#86 - Adding entrez id column to pqtl.tsv
Pull Request -
State: closed - Opened by naglem over 6 years ago
#85 - Add entrez ID column to pqtl.tsv
Pull Request -
State: closed - Opened by naglem over 6 years ago
- 1 comment
#84 - Add pqtl_entrez_id column to pqtl.tsv
Pull Request -
State: closed - Opened by dhimmel over 6 years ago
- 1 comment
#83 - Explore pQTL data
Pull Request -
State: closed - Opened by dhimmel over 6 years ago
#82 - Add pqtl_entrez_id column to pqtl.tsv
Issue -
State: closed - Opened by dhimmel over 6 years ago
- 12 comments
#82 - Add pqtl_entrez_id column to pqtl.tsv
Issue -
State: closed - Opened by dhimmel over 6 years ago
- 12 comments
#81 - Add pQTL data for pilot analysis
Pull Request -
State: closed - Opened by naglem over 6 years ago
- 16 comments
#80 - add xlrd to environment
Pull Request -
State: closed - Opened by gwaybio over 6 years ago
#79 - Install xlrd >= 0.9.0 for Excel support
Issue -
State: closed - Opened by gwaybio over 6 years ago
#79 - Install xlrd >= 0.9.0 for Excel support
Issue -
State: closed - Opened by gwaybio over 6 years ago
#78 - Comparison of disk storage methods within NumPy/SciPy
Pull Request -
State: closed - Opened by zietzm over 6 years ago
- 7 comments
#78 - Comparison of disk storage methods within NumPy/SciPy
Pull Request -
State: closed - Opened by zietzm over 6 years ago
- 7 comments
#77 - Add demonstration notebook for gene queries
Pull Request -
State: closed - Opened by dhimmel over 6 years ago
- 3 comments
#77 - Add demonstration notebook for gene queries
Pull Request -
State: closed - Opened by dhimmel over 6 years ago
- 3 comments
#76 - Disk storage of DWPC matrices
Issue -
State: closed - Opened by zietzm almost 7 years ago
- 4 comments
#76 - Disk storage of DWPC matrices
Issue -
State: closed - Opened by zietzm almost 7 years ago
- 4 comments
#75 - Update conda environment on 2018-02-14
Pull Request -
State: closed - Opened by dhimmel almost 7 years ago
- 2 comments
#75 - Update conda environment on 2018-02-14
Pull Request -
State: closed - Opened by dhimmel almost 7 years ago
- 2 comments
#74 - Next Steps
Issue -
State: closed - Opened by zietzm almost 7 years ago
- 1 comment
#74 - Next Steps
Issue -
State: closed - Opened by zietzm almost 7 years ago
- 1 comment
#73 - Fix short_repeat error
Pull Request -
State: closed - Opened by zietzm about 7 years ago
- 2 comments
#73 - Fix short_repeat error
Pull Request -
State: closed - Opened by zietzm about 7 years ago
- 2 comments
#72 - Refactor Rephetio DWPC notebooks
Pull Request -
State: closed - Opened by dhimmel about 7 years ago
- 2 comments
#71 - Update conda environment with latest versions
Pull Request -
State: closed - Opened by dhimmel about 7 years ago
#70 - Merge 'Develop' into Master
Pull Request -
State: closed - Opened by zietzm about 7 years ago
- 2 comments
#70 - Merge 'Develop' into Master
Pull Request -
State: closed - Opened by zietzm about 7 years ago
- 2 comments
#69 - Support for 6 node metapaths
Pull Request -
State: closed - Opened by zietzm over 7 years ago
#69 - Support for 6 node metapaths
Pull Request -
State: closed - Opened by zietzm over 7 years ago
#68 - Develop
Pull Request -
State: closed - Opened by zietzm over 7 years ago
#67 - General case for repeated metanodes
Pull Request -
State: closed - Opened by zietzm over 7 years ago
#67 - General case for repeated metanodes
Pull Request -
State: closed - Opened by zietzm over 7 years ago
#66 - Overhaul BAAB function with simpler method
Pull Request -
State: closed - Opened by zietzm over 7 years ago
#66 - Overhaul BAAB function with simpler method
Pull Request -
State: closed - Opened by zietzm over 7 years ago
#65 - Add BABA metapath functionality
Pull Request -
State: closed - Opened by zietzm over 7 years ago
#65 - Add BABA metapath functionality
Pull Request -
State: closed - Opened by zietzm over 7 years ago
#64 - Categorize Metapaths
Pull Request -
State: closed - Opened by zietzm over 7 years ago
#64 - Categorize Metapaths
Pull Request -
State: closed - Opened by zietzm over 7 years ago
#63 - Add DWPC functionality for BAAB case
Pull Request -
State: closed - Opened by zietzm over 7 years ago
#63 - Add DWPC functionality for BAAB case
Pull Request -
State: closed - Opened by zietzm over 7 years ago
#62 - New file for DWPC
Pull Request -
State: closed - Opened by zietzm over 7 years ago
#62 - New file for DWPC
Pull Request -
State: closed - Opened by zietzm over 7 years ago
#61 - Add DWPC functionality for BABA case
Pull Request -
State: closed - Opened by zietzm over 7 years ago
- 5 comments
#60 - Add metapath categorization
Pull Request -
State: closed - Opened by zietzm over 7 years ago
- 2 comments
#60 - Add metapath categorization
Pull Request -
State: closed - Opened by zietzm over 7 years ago
- 2 comments
#59 - [WIP] Add general DWPC method for arbitrary metapaths
Pull Request -
State: closed - Opened by zietzm over 7 years ago
- 5 comments
#59 - [WIP] Add general DWPC method for arbitrary metapaths
Pull Request -
State: closed - Opened by zietzm over 7 years ago
- 5 comments
#58 - Coordinating matrix DWPC implementation with Scripps folks
Issue -
State: open - Opened by dhimmel over 7 years ago
- 8 comments
#58 - Coordinating matrix DWPC implementation with Scripps folks
Issue -
State: open - Opened by dhimmel over 7 years ago
- 8 comments
#57 - Dual normalize corner cases
Pull Request -
State: closed - Opened by zietzm over 7 years ago
#57 - Dual normalize corner cases
Pull Request -
State: closed - Opened by zietzm over 7 years ago
#56 - Graph algorithms for HetNets
Issue -
State: closed - Opened by mutandon over 7 years ago
- 1 comment
#56 - Graph algorithms for HetNets
Issue -
State: closed - Opened by mutandon over 7 years ago
- 1 comment
#55 - Simultaneous query of multiple nodes
Issue -
State: open - Opened by zietzm over 7 years ago
- 5 comments
#55 - Simultaneous query of multiple nodes
Issue -
State: open - Opened by zietzm over 7 years ago
- 5 comments
#54 - Regularize sparse matrix type
Pull Request -
State: closed - Opened by zietzm over 7 years ago
- 2 comments
#54 - Regularize sparse matrix type
Pull Request -
State: closed - Opened by zietzm over 7 years ago
- 2 comments
#53 - Optimize matrix chain multiplication
Issue -
State: closed - Opened by dhimmel over 7 years ago
- 16 comments
#53 - Optimize matrix chain multiplication
Issue -
State: closed - Opened by dhimmel over 7 years ago
- 16 comments
#52 - DWPC for metapaths with multi-repeated nodes
Pull Request -
State: closed - Opened by kkloste over 7 years ago
- 2 comments
#52 - DWPC for metapaths with multi-repeated nodes
Pull Request -
State: closed - Opened by kkloste over 7 years ago
- 2 comments
#51 - Multi duplicate
Pull Request -
State: closed - Opened by kkloste over 7 years ago
- 1 comment
#51 - Multi duplicate
Pull Request -
State: closed - Opened by kkloste over 7 years ago
- 1 comment
#50 - two-repeated-nodes can be deleted
Issue -
State: closed - Opened by kkloste over 7 years ago
- 5 comments
#50 - two-repeated-nodes can be deleted
Issue -
State: closed - Opened by kkloste over 7 years ago
- 5 comments
#49 - Replicate Rephetio DWPC values
Pull Request -
State: closed - Opened by zietzm over 7 years ago
- 9 comments
#49 - Replicate Rephetio DWPC values
Pull Request -
State: closed - Opened by zietzm over 7 years ago
- 9 comments
#48 - Accidental PR from wrong branch
Pull Request -
State: closed - Opened by zietzm over 7 years ago
#48 - Accidental PR from wrong branch
Pull Request -
State: closed - Opened by zietzm over 7 years ago
#47 - DWPC implementation coverage of the Project Rephetio metapaths
Issue -
State: closed - Opened by dhimmel over 7 years ago
- 8 comments
#47 - DWPC implementation coverage of the Project Rephetio metapaths
Issue -
State: closed - Opened by dhimmel over 7 years ago
- 8 comments
#46 - Hetnet permutation via adjacency matrices
Issue -
State: closed - Opened by dhimmel over 7 years ago
- 2 comments
#46 - Hetnet permutation via adjacency matrices
Issue -
State: closed - Opened by dhimmel over 7 years ago
- 2 comments
#45 - Implement matrix DWPC (3rd and mergeable PR)
Pull Request -
State: closed - Opened by dhimmel over 7 years ago
#45 - Implement matrix DWPC (3rd and mergeable PR)
Pull Request -
State: closed - Opened by dhimmel over 7 years ago
#44 - Add sparse functionality in degree_weight and diffusion
Pull Request -
State: closed - Opened by zietzm over 7 years ago
- 1 comment