Ecosyste.ms: Issues

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GitHub / greenelab/ccc issues and pull requests

#40 - [build]: Release version v0.2.2

Pull Request - State: closed - Opened by haoyu-zc about 2 months ago

#39 - Fix the calculation for the number of threads to be used

Pull Request - State: closed - Opened by haoyu-zc about 2 months ago - 2 comments

#38 - Processing does not stop when pressing Ctrl-C

Issue - State: open - Opened by miltondp 2 months ago - 1 comment

#37 - Parallelization with n_jobs not work

Issue - State: closed - Opened by Ci-TJ 2 months ago - 11 comments

#36 - Editorial revision

Pull Request - State: closed - Opened by miltondp 3 months ago - 1 comment

#35 - Attempt to fix unit tests

Pull Request - State: closed - Opened by miltondp 5 months ago

#34 - `setup_data.py`: fix GTEx links

Pull Request - State: closed - Opened by miltondp 7 months ago

#33 - workflows/pytest: fix actions versions

Pull Request - State: closed - Opened by miltondp 7 months ago - 1 comment

#32 - Add CCC logo

Pull Request - State: closed - Opened by miltondp 9 months ago - 1 comment

#31 - Revision

Pull Request - State: closed - Opened by miltondp 11 months ago - 2 comments

#30 - Fix dependencies and require numpy>=1.21

Pull Request - State: closed - Opened by miltondp about 1 year ago - 1 comment

#29 - Add Docker improvements

Pull Request - State: closed - Opened by miltondp over 1 year ago - 1 comment

#28 - CCC requires numpy >= 1.21

Issue - State: closed - Opened by jjc2718 almost 2 years ago - 3 comments

#26 - README.md: add another example of parallelization

Pull Request - State: closed - Opened by miltondp over 2 years ago

#25 - Add a workflow to test CCC under Python 3.9 and 3.10 across all operating systems

Pull Request - State: closed - Opened by miltondp over 2 years ago - 1 comment

#24 - Improve "Reproducible research" section in README.md

Pull Request - State: closed - Opened by miltondp over 2 years ago - 1 comment

#23 - Complete (and improve) documentation (README.md files)

Pull Request - State: closed - Opened by miltondp over 2 years ago - 1 comment

#22 - Add setup.py to create PyPI package ccc-coef

Pull Request - State: closed - Opened by miltondp over 2 years ago - 1 comment

#21 - Add support for categorical values and pandas DataFrame as input

Pull Request - State: closed - Opened by miltondp over 2 years ago - 3 comments

#20 - Rename functions and modules

Pull Request - State: closed - Opened by miltondp over 2 years ago - 2 comments

#19 - Improve CCC function and add MIC on all GTEx/whole blood selected genes

Pull Request - State: closed - Opened by miltondp over 2 years ago - 3 comments

#18 - Add code for GIANT gene networks analyses

Pull Request - State: closed - Opened by miltondp over 2 years ago - 2 comments

#17 - Add changes after manuscript revisions + computation time of correlation coefficients

Pull Request - State: closed - Opened by miltondp over 2 years ago - 13 comments

#16 - Add analysis of Maximal Information Coefficient (MIC)

Pull Request - State: closed - Opened by miltondp almost 3 years ago - 2 comments

#15 - Add notebooks for coefficients comparisons

Pull Request - State: closed - Opened by miltondp almost 3 years ago - 1 comment

#14 - Add notebooks to compute correlation matrices

Pull Request - State: closed - Opened by miltondp almost 3 years ago - 1 comment

#13 - Add new dependencies and general improvements

Pull Request - State: closed - Opened by miltondp almost 3 years ago

#11 - Fix Clustermatch coefficient issues

Pull Request - State: closed - Opened by miltondp almost 3 years ago - 2 comments

#10 - Improve performance on Clustermatch coefficient

Pull Request - State: closed - Opened by miltondp about 3 years ago - 2 comments

#9 - Docker: create home directory

Pull Request - State: closed - Opened by miltondp about 3 years ago

#8 - Update script to run docker image

Pull Request - State: closed - Opened by miltondp about 3 years ago - 1 comment

#7 - Add optimized version of Clustermatch code

Pull Request - State: closed - Opened by miltondp about 3 years ago - 2 comments

#6 - Add code to process recount2 data and compute correlation matrices

Pull Request - State: closed - Opened by miltondp about 3 years ago - 1 comment

#5 - Compute correlations on GTEx v8 gene expression data

Pull Request - State: closed - Opened by miltondp about 3 years ago - 1 comment

#4 - Add code to preprocess GTEx gene expression data

Pull Request - State: closed - Opened by miltondp about 3 years ago - 4 comments

#3 - Add code to preprocess GTEx gene expression data

Pull Request - State: closed - Opened by miltondp about 3 years ago - 1 comment

#2 - Potential problem with jupyterlab and tqdm

Issue - State: open - Opened by miltondp over 3 years ago

#1 - Add basic project structure

Pull Request - State: closed - Opened by miltondp over 3 years ago - 1 comment