Ecosyste.ms: Issues
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GitHub / greenelab/annotation-refinery issues and pull requests
#12 - Updating functions to load gene sets to Tribe - these include functions for comparing changes to genesets.
Pull Request -
State: closed - Opened by rzelayafavila about 7 years ago
- 4 comments
#11 - "download_files" not exist
Issue -
State: open - Opened by dongbohu over 7 years ago
#10 - Move common urls among species "*.ini" files to "main_config.ini" file so that we only have to change it in one place if we need to.
Issue -
State: open - Opened by rzelayafavila over 7 years ago
#9 - README.rst: Typos
Issue -
State: closed - Opened by dongbohu over 7 years ago
- 1 comment
#8 - Adding requirements.txt file, updating species files, and adding fix for FTP bug.
Pull Request -
State: closed - Opened by rzelayafavila over 7 years ago
- 1 comment
#7 - urllib.urlretrieve() fails on second ftp transfer
Issue -
State: closed - Opened by rzelayafavila over 7 years ago
- 2 comments
#6 - Annotation refinery is taking too long to load all of the GO, KEGG and DO sets to Tribe.
Issue -
State: open - Opened by rzelayafavila over 7 years ago
#5 - Annotation refinery creating more versions in Tribe when it looks like list of genes in the geneset is unchanged.
Issue -
State: open - Opened by rzelayafavila over 7 years ago
#4 - Removing .hgignore file and adding .gitignore file as we move this repository to git and github.
Pull Request -
State: closed - Opened by rzelayafavila over 7 years ago
#3 - Create a requirements.txt file with all the dependencies
Issue -
State: closed - Opened by rzelayafavila over 7 years ago
- 1 comment
#2 - Abstract code that builds file paths from urls into a function, using os.path. and urlsplit
Issue -
State: open - Opened by rzelayafavila over 7 years ago
#1 - Abstract code in download_files.py file to be able to interact with each service (GO, DO, KEGG) independently.
Issue -
State: open - Opened by rzelayafavila over 7 years ago