GitHub / googlegenomics/utils-java issues and pull requests
#122 - Add OAuth scope to credential, if missing.
Pull Request -
State: closed - Opened by deflaux almost 8 years ago
- 1 comment
#121 - Fix test per updates to underlying data.
Pull Request -
State: closed - Opened by deflaux almost 8 years ago
- 1 comment
#120 - Update to newer versions of dependencies.
Pull Request -
State: closed - Opened by deflaux almost 8 years ago
- 3 comments
#119 - Release version 1-0.9
Issue -
State: closed - Opened by calbach almost 8 years ago
- 1 comment
#118 - Only set the unmapped mate flag for paired reads; fix RG for JSON util
Pull Request -
State: closed - Opened by calbach about 8 years ago
- 1 comment
#117 - Fix headings
Pull Request -
State: closed - Opened by mattmoor about 8 years ago
- 2 comments
#116 - Fix markdown headers.
Pull Request -
State: closed - Opened by deflaux about 8 years ago
- 2 comments
#115 - Don't set the RG tag using read.getReadGroupId()
Pull Request -
State: closed - Opened by calbach over 8 years ago
- 2 comments
#114 - Avoid reuse of stateful static TextTagCodec - fixes concurrent use
Pull Request -
State: closed - Opened by calbach almost 9 years ago
- 2 comments
#113 - Use gRPC Java client generated via protoc 3.0.0.
Pull Request -
State: closed - Opened by deflaux almost 9 years ago
- 3 comments
#112 - Bump gRPC and genomics dependencies.
Pull Request -
State: closed - Opened by deflaux almost 9 years ago
- 2 comments
#111 - Update to use maven artifact of generated gRPC code.
Pull Request -
State: closed - Opened by deflaux almost 9 years ago
- 4 comments
#110 - New version update request: Protobuf 3.0.0 is officially released
Issue -
State: closed - Opened by pgrosu almost 9 years ago
- 1 comment
#109 - New version update request: grpc-java is now at 1.0.0-pre1
Issue -
State: closed - Opened by pgrosu about 9 years ago
- 1 comment
#108 - Configure maven to populate the protocol buffer git submodule.
Pull Request -
State: closed - Opened by deflaux about 9 years ago
- 12 comments
#107 - Get proto buffer git submodule into release module.
Issue -
State: closed - Opened by deflaux about 9 years ago
#106 - Bump protobuf compiler plugin version.
Pull Request -
State: closed - Opened by deflaux about 9 years ago
- 1 comment
#105 - Bump gRPC dependency.
Pull Request -
State: closed - Opened by deflaux about 9 years ago
- 2 comments
#104 - New version bump, s'il vous plaît...grpc-java 0.15.0 is out!
Issue -
State: closed - Opened by pgrosu about 9 years ago
#103 - cannot find symbol [ERROR] symbol: class Variant
Issue -
State: closed - Opened by deflaux about 9 years ago
#102 - Merging chromosomal comparator and multi-nucleotide predicate.
Pull Request -
State: closed - Opened by hwangy about 9 years ago
- 2 comments
#101 - Also consider overlapping variants at different sites.
Pull Request -
State: closed - Opened by deflaux about 9 years ago
- 1 comment
#100 - Merging various variant/variant call utility functions
Pull Request -
State: closed - Opened by hwangy about 9 years ago
- 6 comments
#99 - Expose field mask interceptor utility
Issue -
State: open - Opened by calbach about 9 years ago
- 1 comment
#98 - Might be nice to bump pom.xml to grpc java to 0.14.1
Issue -
State: closed - Opened by pgrosu about 9 years ago
#97 - Fix clone docs to include submodule update
Pull Request -
State: closed - Opened by calbach about 9 years ago
- 1 comment
#96 - rm generated gRPC code and protos in favor of a Git submodule
Pull Request -
State: closed - Opened by calbach about 9 years ago
- 6 comments
#95 - Modify the variant merge strategies to be aware of the window.
Pull Request -
State: closed - Opened by deflaux about 9 years ago
- 3 comments
#94 - Add variant merging strategies.
Pull Request -
State: closed - Opened by deflaux about 9 years ago
- 2 comments
#93 - Update streaming requests to be created from a prototype.
Pull Request -
State: closed - Opened by deflaux about 9 years ago
- 1 comment
#92 - Also deploy a test jar.
Pull Request -
State: closed - Opened by deflaux about 9 years ago
- 1 comment
#91 - Add explicit dependency on new google auth library and bump existing …
Pull Request -
State: closed - Opened by deflaux about 9 years ago
- 2 comments
#90 - Finish client-side support for partial responses.
Pull Request -
State: closed - Opened by deflaux about 9 years ago
- 1 comment
#89 - Upgrade to v1 of the genomics API.
Pull Request -
State: closed - Opened by deflaux over 9 years ago
- 1 comment
#88 - Clean up imports and whitespace.
Pull Request -
State: closed - Opened by deflaux over 9 years ago
- 1 comment
#87 - Clean up imports and whitespace.
Pull Request -
State: closed - Opened by deflaux over 9 years ago
#86 - Add shard boundary mode for overlapping non-variant segments.
Pull Request -
State: closed - Opened by deflaux over 9 years ago
- 1 comment
#85 - Bump grpc-java.
Pull Request -
State: closed - Opened by deflaux over 9 years ago
- 1 comment
#84 - Bump grpc-java.
Pull Request -
State: closed - Opened by deflaux over 9 years ago
- 1 comment
#83 - Bump grpc-java.
Pull Request -
State: closed - Opened by deflaux over 9 years ago
- 4 comments
#82 - Bump grpc-java dependency.
Pull Request -
State: closed - Opened by deflaux over 9 years ago
- 1 comment
#81 - update gRPC-Java dependency
Issue -
State: closed - Opened by deflaux over 9 years ago
#80 - Minor cleanup.
Pull Request -
State: closed - Opened by deflaux over 9 years ago
- 1 comment
#79 - Update ALPN instructions.
Pull Request -
State: closed - Opened by deflaux over 9 years ago
- 4 comments
#78 - differentiate between the types of gRPC permission denied errors
Issue -
State: open - Opened by deflaux over 9 years ago
#77 - reduce gRPC exponential back-off settings
Issue -
State: open - Opened by deflaux over 9 years ago
#76 - Refactor Auth.
Pull Request -
State: closed - Opened by deflaux over 9 years ago
- 1 comment
#75 - Switch minimal gRPC example to Application Default Credentials.
Pull Request -
State: closed - Opened by deflaux over 9 years ago
#74 - Add projectId to Streaming requests.
Issue -
State: closed - Opened by deflaux over 9 years ago
- 1 comment
#73 - Add V1 version of call comparator.
Pull Request -
State: closed - Opened by deflaux over 9 years ago
- 1 comment
#71 - Retry grpc stream
Pull Request -
State: closed - Opened by deflaux over 9 years ago
- 1 comment
#70 - Add automated style cleanup.
Issue -
State: open - Opened by deflaux over 9 years ago
#69 - Added tests for gRPC retries.
Pull Request -
State: closed - Opened by deflaux over 9 years ago
- 5 comments
#68 - Add retrying of gRPC streams.
Pull Request -
State: closed - Opened by deflaux over 9 years ago
- 5 comments
#67 - Move VariantUtils from dataflow-java to utils-java.
Pull Request -
State: closed - Opened by deflaux almost 10 years ago
- 1 comment
#66 - Add retries with exponential backoff for gRPC.
Issue -
State: closed - Opened by deflaux almost 10 years ago
- 1 comment
#65 - Refactor ShardUtils for more generic filter support.
Issue -
State: open - Opened by deflaux almost 10 years ago
#64 - Shard readGroupSets using the associated referenceSet.
Pull Request -
State: closed - Opened by deflaux almost 10 years ago
- 3 comments
#63 - Use an API Key for gRPC integration tests.
Pull Request -
State: closed - Opened by deflaux almost 10 years ago
- 1 comment
#62 - Implement a read + variant streaming specific heuristic for calculating shard sizes
Issue -
State: open - Opened by dionloy almost 10 years ago
- 11 comments
#61 - Bump grpc-java version.
Pull Request -
State: closed - Opened by deflaux almost 10 years ago
#60 - How to open in intelliJ
Pull Request -
State: closed - Opened by jean-philippe-martin almost 10 years ago
- 1 comment
#59 - Add a note for Eclipse users and local builds.
Pull Request -
State: closed - Opened by deflaux almost 10 years ago
- 6 comments
#58 - Facilitate explicit channel shutdown.
Pull Request -
State: closed - Opened by deflaux almost 10 years ago
- 1 comment
#57 - Add a note about Maven 3.3.3
Pull Request -
State: closed - Opened by deflaux almost 10 years ago
- 3 comments
#56 - Bump gRPC version.
Pull Request -
State: closed - Opened by deflaux almost 10 years ago
- 3 comments
#55 - Refactor some reusable code from dataflow-java to utils-java.
Pull Request -
State: closed - Opened by deflaux almost 10 years ago
- 1 comment
#54 - Enforce shard boundaries for gRPC.
Pull Request -
State: closed - Opened by deflaux almost 10 years ago
- 1 comment
#53 - mention skipITs
Pull Request -
State: closed - Opened by jean-philippe-martin almost 10 years ago
- 1 comment
#52 - Work around auth + whitelist issues.
Pull Request -
State: closed - Opened by deflaux almost 10 years ago
- 1 comment
#51 - Remove API_KEY workarounds for gRPC
Issue -
State: closed - Opened by deflaux almost 10 years ago
#50 - Use gRPC snapshot.
Pull Request -
State: closed - Opened by deflaux almost 10 years ago
#49 - Refactor streamers from dataflow-java for reuse by spark.
Pull Request -
State: closed - Opened by deflaux almost 10 years ago
- 1 comment
#48 - Add support for partial responses via gRPC.
Issue -
State: closed - Opened by deflaux almost 10 years ago
#47 - Fixing empty read name handling for grpc
Pull Request -
State: closed - Opened by iliat almost 10 years ago
#46 - Refactor genomic range sharing into utils-java.
Pull Request -
State: closed - Opened by deflaux almost 10 years ago
- 3 comments
#45 - Fix package paths.
Pull Request -
State: closed - Opened by deflaux almost 10 years ago
#44 - Tidy up package paths.
Pull Request -
State: closed - Opened by deflaux about 10 years ago
- 1 comment
#43 - Added support for SMRecord<->Read conversions for GRPC API implementa…
Pull Request -
State: closed - Opened by iliat about 10 years ago
- 3 comments
#42 - Configure Travis CI to check java8.
Pull Request -
State: closed - Opened by deflaux about 10 years ago
#41 - Adding MD tag parser for v1 Reads
Pull Request -
State: closed - Opened by Careyjmac about 10 years ago
- 4 comments
#40 - From logs to graphs and summaries
Pull Request -
State: closed - Opened by jean-philippe-martin about 10 years ago
- 3 comments
#39 - Revert "[maven-release-plugin] prepare release google-genomics-utils-…
Pull Request -
State: closed - Opened by davidadamsphd about 10 years ago
- 1 comment
#38 - Undoing my messed up version release so I can start over.
Pull Request -
State: closed - Opened by davidadamsphd about 10 years ago
- 1 comment
#37 - Fixing auth for gRPC to get credentials from .json file.
Pull Request -
State: closed - Opened by iliat about 10 years ago
- 8 comments
#36 - Combining all read conversion utils to ReadUtils in utils-java.
Pull Request -
State: closed - Opened by davidadamsphd about 10 years ago
- 6 comments
#35 - Refactor reusable parts of ReadStreamer into utils-java
Issue -
State: closed - Opened by deflaux about 10 years ago
- 1 comment
#34 - Refactor reusable parts of VariantStreamer into utils-java
Issue -
State: closed - Opened by deflaux about 10 years ago
- 1 comment
#33 - Facilitate creation of OfflineAuth via previously performed oauth flow.
Pull Request -
State: closed - Opened by deflaux about 10 years ago
- 1 comment
#32 - Rearranged gRPC content.
Pull Request -
State: closed - Opened by deflaux about 10 years ago
- 1 comment
#31 - Minor tweaks to GRPC docs and example.
Pull Request -
State: closed - Opened by deflaux about 10 years ago
- 1 comment
#30 - Facilitate strict shard boundaries for GRPC
Issue -
State: closed - Opened by deflaux about 10 years ago
- 2 comments
#29 - Update pom.xml
Pull Request -
State: closed - Opened by Careyjmac about 10 years ago
- 1 comment
#28 - Adding convenience Channels class, and TLS/SSL performance workaround
Pull Request -
State: closed - Opened by ssgross about 10 years ago
- 1 comment
#27 - Grpc
Pull Request -
State: closed - Opened by ssgross about 10 years ago
- 1 comment
#19 - Add client-side flow control
Issue -
State: closed - Opened by deflaux over 10 years ago
- 1 comment
Labels: enhancement, help wanted
#15 - support pre-fetching of reads and variants for cluster computing use cases
Issue -
State: closed - Opened by deflaux over 10 years ago
- 2 comments
Labels: enhancement
#12 - Throughput and Timing of the API
Issue -
State: closed - Opened by pgrosu over 10 years ago
- 1 comment
#7 - Could we have more explicit types?
Issue -
State: closed - Opened by pgrosu almost 11 years ago