googlegenomics/htsget issues and pull requests

#52 - Adds files to support go modules style dependency tracking

Pull Request - State: open - Opened by kcolford about 5 years ago

#51 - Refactors out the use of GCS so a different object store can be used

Pull Request - State: open - Opened by kcolford about 5 years ago

#50 - Local server

Issue - State: open - Opened by amanpatel over 5 years ago

#49 - Htsget BAM to implementation for file interface

Pull Request - State: open - Opened by aaliomer almost 6 years ago - 6 comments

#48 - Read CSI region

Pull Request - State: open - Opened by anamanolache about 6 years ago

#47 - Create CSI package and use the methods for processing BAI files.

Pull Request - State: closed - Opened by anamanolache about 6 years ago

#46 - Get reference id from BCF file

Pull Request - State: closed - Opened by anamanolache about 6 years ago

#45 - Move api subpackage out of the htsget-server

Pull Request - State: closed - Opened by kemp-google about 6 years ago

#44 - fixed context problem for gcloud app engine

Pull Request - State: closed - Opened by anamanolache about 6 years ago - 1 comment

#43 - Move 'api' package out of 'internal'

Pull Request - State: closed - Opened by anamanolache about 6 years ago

#42 - created package for CSI file handling

Pull Request - State: closed - Opened by anamanolache over 6 years ago

#41 - Extracted binary methods to a new package

Pull Request - State: closed - Opened by anamanolache over 6 years ago

#40 - Get Reference ID from BCF file

Pull Request - State: closed - Opened by anamanolache over 6 years ago - 1 comment

#39 - Updated Dockerfile for htsget to comply with golang docker container

Pull Request - State: closed - Opened by anamanolache over 6 years ago

#38 - Add requester pays support

Issue - State: open - Opened by kemp-google over 6 years ago
Labels: enhancement, good first issue

#37 - Update travis/dockerfile to use go 1.10

Pull Request - State: closed - Opened by anamanolache over 6 years ago - 1 comment

#36 - Added support for $id.bai index files

Pull Request - State: closed - Opened by anamanolache over 6 years ago

#35 - htsget conformance test fails with non-matching reads for some files

Issue - State: closed - Opened by kemp-google over 6 years ago - 2 comments

#34 - [Question] Is support for more formats planned (for example VCF)?

Issue - State: closed - Opened by olavurmortensen over 6 years ago - 1 comment

#33 - Error with samtools flagstat

Issue - State: closed - Opened by nmousavi over 6 years ago - 2 comments

#32 - Remove https from the install path

Pull Request - State: closed - Opened by nmousavi over 6 years ago - 1 comment

#31 - Add support for CRAMs

Issue - State: open - Opened by mbookman over 6 years ago - 6 comments

#30 - The server should probe for $id.bai as well as $id.bam.bai

Issue - State: closed - Opened by kemp-google over 6 years ago

#29 - server: Properly route the CORS handlers

Pull Request - State: closed - Opened by gkelly almost 7 years ago

#28 - htsget-server: Add CORS headers to responses

Pull Request - State: closed - Opened by gkelly almost 7 years ago

#27 - Reflect `Origin` headers in requests

Issue - State: closed - Opened by gkelly almost 7 years ago
Labels: bug

#26 - htsget-server: Change default port to 80.

Pull Request - State: closed - Opened by kemp-google almost 7 years ago

#25 - appengine: Change block size and limit reads

Pull Request - State: closed - Opened by kemp-google almost 7 years ago

#24 - appengine: add bucket whitelist and update README

Pull Request - State: closed - Opened by kemp-google almost 7 years ago

#23 - README: Add docker instructions

Pull Request - State: closed - Opened by kemp-google almost 7 years ago

#22 - Dockerfile: Add EXPOSE directive and some comments

Pull Request - State: closed - Opened by kemp-google almost 7 years ago

#21 - appengine: add appengine application

Pull Request - State: closed - Opened by kemp-google almost 7 years ago

#20 - Add an AppEngine frontend to allow easy scaled deployments

Issue - State: open - Opened by kemp-google about 7 years ago
Labels: enhancement

#19 - Adding CRAM support

Pull Request - State: open - Opened by tjennison-google about 7 years ago - 1 comment

#18 - travis: Stop building against golang master

Pull Request - State: closed - Opened by kemp-google about 7 years ago

#17 - htsget-client: Add a simple htsget client

Pull Request - State: closed - Opened by kemp-google about 7 years ago

#16 - samtools reports an error at the end of the stream

Issue - State: closed - Opened by kemp-google about 7 years ago - 3 comments

#15 - api: Update reference to version 1.0.0 from 0.2rc

Pull Request - State: closed - Opened by kemp-google about 7 years ago

#14 - readme: linkify the issue

Pull Request - State: closed - Opened by kemp-google about 7 years ago

#13 - htsget: Internalize support packages

Pull Request - State: closed - Opened by gkelly about 7 years ago

#12 - readme: Add godoc reference badge

Pull Request - State: closed - Opened by gkelly about 7 years ago

#11 - readme: Add travis build status badge

Pull Request - State: closed - Opened by gkelly about 7 years ago - 1 comment

#10 - htsget: Add configuration for travis

Pull Request - State: closed - Opened by gkelly about 7 years ago

#9 - readme: Add EAP note in preparation for going live

Pull Request - State: closed - Opened by kemp-google about 7 years ago

#8 - readme: Add known issues section

Pull Request - State: closed - Opened by kemp-google about 7 years ago

#7 - Too many extra reads are returned

Issue - State: open - Opened by kemp-google about 7 years ago

#6 - htsget-server: Add bucket whitelisting

Pull Request - State: closed - Opened by gkelly about 7 years ago - 1 comment

#5 - readme: Add notes about file locations, CRAM.

Pull Request - State: closed - Opened by kemp-google about 7 years ago

#4 - bam: validate the number of intervals

Pull Request - State: closed - Opened by gkelly about 7 years ago

#3 - Update README to reflect latest mode changes.

Pull Request - State: closed - Opened by kemp-google about 7 years ago

#2 - api: flatten http headers in reads response

Pull Request - State: closed - Opened by gkelly about 7 years ago

#1 - Fix end range in bin calculation.

Pull Request - State: closed - Opened by kemp-google about 7 years ago

GitHub / googlegenomics/htsget issues and pull requests