Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / google-research/sofima issues and pull requests
#77 - Move default config registration and instantiation into connectomics.subvolume_processor.
Pull Request -
State: closed - Opened by copybara-service[bot] 11 days ago
#76 - - Add default configurations for mesh relaxation for 2d EM
Pull Request -
State: closed - Opened by copybara-service[bot] 20 days ago
#75 - - Rename processor configs from `ProcessorNameConfig` to `Config`.
Pull Request -
State: closed - Opened by copybara-service[bot] 21 days ago
#74 - - Create `RelaxMesh` subvolume processor. Also adds private interfaces to SubvolumeProcessors for data paths supporting internal vs external data loading.
Pull Request -
State: closed - Opened by copybara-service[bot] about 2 months ago
#73 - Combine metadata.py's VolumeMetadata and Volume into a single class.
Pull Request -
State: closed - Opened by copybara-service[bot] about 2 months ago
#72 - Fix dataclass member names for masks. Mildly concerning these aren't caught by static type checking...?
Pull Request -
State: closed - Opened by copybara-service[bot] 2 months ago
#71 - Remove explicit default instantiation from flow_config in favor of listing sane
Pull Request -
State: closed - Opened by copybara-service[bot] 2 months ago
#70 - Add support for custom post patch starts and for progress reporting in flow_field().
Pull Request -
State: closed - Opened by copybara-service[bot] 2 months ago
#69 - Add support for prefer_orig_order in 3d meshes.
Pull Request -
State: closed - Opened by copybara-service[bot] 2 months ago
#68 - Add support for 3d stride in more functions.
Pull Request -
State: closed - Opened by copybara-service[bot] 2 months ago
#67 - Add initial SOFIMA pipeline config.
Pull Request -
State: closed - Opened by copybara-service[bot] 3 months ago
#66 - Add `EstimateMissingFlow` stage.
Pull Request -
State: closed - Opened by copybara-service[bot] 3 months ago
#65 - Add ReconcileAndFilterFlows processor.
Pull Request -
State: closed - Opened by copybara-service[bot] 3 months ago
#64 - Updates to `EstimateFlow` stages.
Pull Request -
State: closed - Opened by copybara-service[bot] 3 months ago
#63 - Extend `build_mask` to support arbitrary data loading
Pull Request -
State: closed - Opened by copybara-service[bot] 3 months ago
#62 - Request for Container image version
Issue -
State: open - Opened by Kimyongmin1018 3 months ago
#61 - Make EstimateFlow's config class dataclasses_json compatible.
Pull Request -
State: closed - Opened by copybara-service[bot] 4 months ago
#60 - - Convert EstimateFlow to use Dataclasses as a configuration parameter, and update pipelines to support.
Pull Request -
State: closed - Opened by copybara-service[bot] 4 months ago
#59 - Add support for 3d maps in inner_box.
Pull Request -
State: closed - Opened by copybara-service[bot] 5 months ago
#58 - Add tile masking for coarse offsets computation
Pull Request -
State: open - Opened by ganctom 5 months ago
- 1 comment
#57 - Fix docstring.
Pull Request -
State: closed - Opened by copybara-service[bot] 6 months ago
#56 - Add scale parameter to WarpCoordMap.
Pull Request -
State: closed - Opened by copybara-service[bot] 9 months ago
#55 - Support setting mode and cval in WarpCoordMap.
Pull Request -
State: closed - Opened by copybara-service[bot] 9 months ago
#54 - Support composing maps of different sizes.
Pull Request -
State: closed - Opened by copybara-service[bot] 9 months ago
#53 - Fix serialization issue in OptimFlow-decorator.
Pull Request -
State: closed - Opened by copybara-service[bot] 9 months ago
#52 - Add support for block interpolation in backward mode.
Pull Request -
State: closed - Opened by copybara-service[bot] 11 months ago
#51 - Adjust schema for virtual chunked.
Pull Request -
State: closed - Opened by copybara-service[bot] 12 months ago
#50 - Changes to schema adjustment utilities.
Pull Request -
State: closed - Opened by copybara-service[bot] 12 months ago
#49 - sofima.warp.render.tiles raise cv2.error: OpenCV(4.7.0) (-215:Assertion failed) dst.cols < SHRT_MAX && dst.rows < SHRT_MAX && src.cols < SHRT_MAX && src.rows < SHRT_MAX in function 'remap'
Issue -
State: open - Opened by youssefmys about 1 year ago
- 3 comments
#48 - Support flow volumes with negative delta_z in reconcile_flows.
Pull Request -
State: closed - Opened by copybara-service[bot] about 1 year ago
#47 - [LSC] Ignore incorrect type annotations related to jax.numpy APIs
Pull Request -
State: closed - Opened by copybara-service[bot] about 1 year ago
#46 - Add .editorconfig.
Pull Request -
State: closed - Opened by copybara-service[bot] over 1 year ago
#45 - Add pyink default settings.
Pull Request -
State: closed - Opened by copybara-service[bot] over 1 year ago
#44 - Include the decorators submodule in the sofima package.
Pull Request -
State: closed - Opened by copybara-service[bot] over 1 year ago
#43 - Add decorators.
Pull Request -
State: closed - Opened by copybara-service[bot] over 1 year ago
#42 - Change OpenCV import.
Pull Request -
State: closed - Opened by copybara-service[bot] over 1 year ago
#41 - Adding support for Zarr stitching/fusion
Pull Request -
State: open - Opened by jwong-nd over 1 year ago
- 2 comments
#38 - Non-overlapping tiles
Issue -
State: closed - Opened by Matthijs-utf8 over 1 year ago
- 1 comment
#37 - Propagate stride to compute_target_mesh.
Pull Request -
State: closed - Opened by copybara-service[bot] over 1 year ago
#36 - Add missing "!pip install" call for neuroglancer.
Pull Request -
State: closed - Opened by copybara-service[bot] over 1 year ago
#35 - Remove useless outputs from the EM alignment notebook.
Pull Request -
State: closed - Opened by copybara-service[bot] over 1 year ago
#34 - Limit data loading to what is needed to render the current block.
Pull Request -
State: closed - Opened by copybara-service[bot] over 1 year ago
#33 - Reduce redundant operations in the rendering processor through caching.
Pull Request -
State: closed - Opened by copybara-service[bot] over 1 year ago
#32 - Add a demo of block-wise alignment to the EM alignment notebook.
Pull Request -
State: closed - Opened by copybara-service[bot] over 1 year ago
#31 - Move ReconcileCrossBlockMaps and some simple processors to SOFIMA.
Pull Request -
State: closed - Opened by copybara-service[bot] over 1 year ago
#30 - Include the processor submodule in the sofima package.
Pull Request -
State: closed - Opened by copybara-service[bot] over 1 year ago
#29 - Fix a bug in compute_flow_map3d (moving the whole box vs the start point).
Pull Request -
State: closed - Opened by copybara-service[bot] over 1 year ago
#28 - Cast origin coordinates to jnp.array.
Pull Request -
State: closed - Opened by copybara-service[bot] over 1 year ago
- 1 comment
#27 - Remove from __future__ imports.
Pull Request -
State: closed - Opened by copybara-service[bot] over 1 year ago
#26 - Add a processor for rendering stitched 3d tiles.
Pull Request -
State: closed - Opened by copybara-service[bot] over 1 year ago
#25 - Add support for explicit tile masks.
Pull Request -
State: closed - Opened by copybara-service[bot] over 1 year ago
#24 - Fix or ignore some pytype errors related to jnp.ndarray == jax.Array.
Pull Request -
State: closed - Opened by copybara-service[bot] almost 2 years ago
#23 - Add future annotations import to stitch_elastic.
Pull Request -
State: closed - Opened by mjanusz almost 2 years ago
#22 - Minor docstring fix in map_utils.
Pull Request -
State: closed - Opened by copybara-service[bot] almost 2 years ago
#21 - Add support for 3d tiles in flow estimation and mesh optimization.
Pull Request -
State: closed - Opened by copybara-service[bot] almost 2 years ago
#20 - Generalize more operations in map_utils to 3d coordinate maps.
Pull Request -
State: closed - Opened by copybara-service[bot] almost 2 years ago
#19 - Add a function to compute forces on a 3d mesh (for coarse stitching).
Pull Request -
State: closed - Opened by copybara-service[bot] almost 2 years ago
#18 - Add support for a batch dimension in elastic_mesh_3d.
Pull Request -
State: closed - Opened by copybara-service[bot] almost 2 years ago
#17 - Generalize more operations in map_utils to 3d, add support for a batch channel in elastic_mesh_3d, and switch the map_utils and mesh modules to pep-585 type annotations.
Pull Request -
State: open - Opened by copybara-service[bot] almost 2 years ago
#16 - Bump up required Python version to 3.9 due to the use of https://peps.python.org/pep-0585/
Pull Request -
State: closed - Opened by copybara-service[bot] almost 2 years ago
#15 - Remove integral mask variables to save memory.
Pull Request -
State: closed - Opened by copybara-service[bot] almost 2 years ago
- 1 comment
#14 - Move away from a deprecated submodule in scipy (fftpack.helper -> fftpack).
Pull Request -
State: closed - Opened by copybara-service[bot] almost 2 years ago
#13 - Fix typo in make_affine_map docstring.
Pull Request -
State: closed - Opened by copybara-service[bot] almost 2 years ago
- 1 comment
#12 - Fix type annotations in render_tiles in warp.py
Pull Request -
State: closed - Opened by KyleLuther almost 2 years ago
- 3 comments
#11 - Add a bool argument for optional returning of the warped tiles and their relative positions.
Pull Request -
State: closed - Opened by copybara-service[bot] about 2 years ago
- 1 comment
#10 - [JAX] Import scipy submodules directly in code that uses them.
Pull Request -
State: closed - Opened by copybara-service[bot] about 2 years ago
#9 - Add a demo notebook for EM alignment.
Pull Request -
State: closed - Opened by copybara-service[bot] about 2 years ago
#8 - Allow `expected_output_box` to work with N-d bounding boxes.
Pull Request -
State: closed - Opened by copybara-service[bot] over 2 years ago
#7 - Internal
Pull Request -
State: open - Opened by copybara-service[bot] over 2 years ago
#6 - Allow an optional TensorStore context when opening descriptors.
Pull Request -
State: open - Opened by copybara-service[bot] over 2 years ago
#5 - Bugfix: correct start locations in AbsoluteSubvolumeIndexer.
Pull Request -
State: open - Opened by copybara-service[bot] over 2 years ago
#4 - EstimateFlow processor.
Pull Request -
State: closed - Opened by copybara-service[bot] over 2 years ago
#3 - Aligning consecutive slices
Issue -
State: closed - Opened by EmilieDel over 2 years ago
- 2 comments
#2 - Remove pip install -e . instructions.
Pull Request -
State: closed - Opened by copybara-service[bot] over 2 years ago
#1 - Add parallelism to warp_subvolume.
Pull Request -
State: closed - Opened by copybara-service[bot] over 2 years ago