google-research/connectomics issues and pull requests

#137 - Add async task support for running pexternal binaries in-process.

Pull Request - State: closed - Opened by copybara-service[bot] 22 days ago

#136 - Add wrapper class to access ExternalBinaries to connectomics.

Pull Request - State: closed - Opened by copybara-service[bot] 22 days ago

#135 - Fix NamedTuple equality for tuple comparison.

Pull Request - State: closed - Opened by copybara-service[bot] 23 days ago

#134 - Add `NamedTuple`s for XYZ/ZYX and XYZC/CZYX tuples, allowing for both named accessors e.g. `.x`, and indexable support. Statically typed so they cannot be accidentally passed to functions expecting a same length tuple, and allows function/member parameter type annotations to ensure ordering.

Pull Request - State: closed - Opened by copybara-service[bot] 23 days ago

#133 - Add ReconcileAndFilterFlows processor.

Pull Request - State: closed - Opened by copybara-service[bot] 23 days ago

#132 - Updates to `EstimateFlow` stages.

Pull Request - State: closed - Opened by copybara-service[bot] 23 days ago

#131 - to_slice -> to_slice4d

Pull Request - State: closed - Opened by copybara-service[bot] 29 days ago

#130 - Avoid: "DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation."

Pull Request - State: closed - Opened by copybara-service[bot] about 1 month ago

#129 - Extend `build_mask` to support arbitrary data loading

Pull Request - State: closed - Opened by copybara-service[bot] about 1 month ago

#128 - Rename BaseVolume to Volume and support Metadata.

Pull Request - State: closed - Opened by copybara-service[bot] about 1 month ago

#127 - Create DecoratorSpecs definitions that are compatible with TensorStore.

Pull Request - State: closed - Opened by copybara-service[bot] about 1 month ago

#126 - Internal cleanup

Pull Request - State: closed - Opened by copybara-service[bot] about 2 months ago

#125 - Add metadata and utilities for manipulating dataclasses to Connectomics.

Pull Request - State: closed - Opened by copybara-service[bot] about 2 months ago

#124 - Make EstimateFlow's config class dataclasses_json compatible.

Pull Request - State: open - Opened by copybara-service[bot] about 2 months ago

#123 - Remove ImmutableArray and MutableArray.

Pull Request - State: closed - Opened by copybara-service[bot] about 2 months ago

#122 - Add training utilities.

Pull Request - State: closed - Opened by copybara-service[bot] about 2 months ago

#121 - Add utilities for instantiating JAX models from config files.

Pull Request - State: closed - Opened by copybara-service[bot] about 2 months ago

#120 - Move the convstack model to the connectomics repository.

Pull Request - State: closed - Opened by copybara-service[bot] about 2 months ago

#119 - Add report_time.

Pull Request - State: closed - Opened by copybara-service[bot] about 2 months ago

#118 - Keep track of 'dim' in get_rag.

Pull Request - State: closed - Opened by copybara-service[bot] 2 months ago

#117 - [numpy] Fix users of NumPy APIs that are removed in NumPy 2.0.

Pull Request - State: closed - Opened by copybara-service[bot] 2 months ago

#116 - - Convert EstimateFlow to use Dataclasses as a configuration parameter, and update pipelines to support.

Pull Request - State: closed - Opened by copybara-service[bot] 3 months ago

#115 - No public description

Pull Request - State: closed - Opened by copybara-service[bot] 3 months ago - 1 comment

#114 - Add lowpass filter decorator.

Pull Request - State: closed - Opened by copybara-service[bot] 3 months ago

#113 - Add StdProjection to compute standard deviation over given dimension.

Pull Request - State: closed - Opened by copybara-service[bot] 6 months ago

#112 - Support schema with chunksizes set to `None`.

Pull Request - State: closed - Opened by copybara-service[bot] 6 months ago

#111 - Make bounding box errors more informative.

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#110 - Silence some pytype errors.

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#109 - Support adding custom search paths.

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#108 - union find test.

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#107 - Add more utils to connectomics/common and ffn/utils

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#106 - Add union_find and object_utils.

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#105 - Add SubvolumeProcessors for filling holes and merging internal objects.

Pull Request - State: closed - Opened by copybara-service[bot] 9 months ago

#104 - Move split_disconnected_components from FFN repo to connectomics.

Pull Request - State: closed - Opened by copybara-service[bot] 9 months ago

#103 - Add module for correcting merge errors based on subcompartment consistency.

Pull Request - State: closed - Opened by copybara-service[bot] 9 months ago

#102 - Add processors for contrast normalization.

Pull Request - State: closed - Opened by copybara-service[bot] 9 months ago

#101 - Add processors for image filtering.

Pull Request - State: closed - Opened by copybara-service[bot] 9 months ago

#100 - Keep indices in a dict.

Pull Request - State: closed - Opened by copybara-service[bot] 10 months ago

#99 - Add a function to build a RAG from a set of objects with associated spatial coordinates.

Pull Request - State: closed - Opened by copybara-service[bot] 10 months ago

#98 - Fix for `extra_flags=None`.

Pull Request - State: closed - Opened by copybara-service[bot] 10 months ago

#97 - Add Log1pFilter, ScaleFilter, and ZScoreFilter.

Pull Request - State: closed - Opened by copybara-service[bot] 10 months ago

#96 - Ensure single truth-value.

Pull Request - State: closed - Opened by copybara-service[bot] 10 months ago

#95 - Changes to schema adjustment utilities.

Pull Request - State: closed - Opened by copybara-service[bot] 10 months ago

#94 - Allow passing extra flags.

Pull Request - State: closed - Opened by copybara-service[bot] 10 months ago

#93 - Add support for multirun pipelines.

Pull Request - State: closed - Opened by copybara-service[bot] 11 months ago

#92 - Update reader.py

Pull Request - State: open - Opened by pan25-1 about 1 year ago - 1 comment

#91 - Make downsampling configuration more flexible to support zarr.

Pull Request - State: closed - Opened by copybara-service[bot] about 1 year ago

#90 - Add standardization decorator with externally computed mean and standard deviation.

Pull Request - State: closed - Opened by copybara-service[bot] about 1 year ago - 1 comment

#89 - Add clipping decorator.

Pull Request - State: closed - Opened by copybara-service[bot] about 1 year ago - 1 comment

#88 - Add .editorconfig.

Pull Request - State: closed - Opened by copybara-service[bot] about 1 year ago

#87 - Add pyink default settings.

Pull Request - State: closed - Opened by copybara-service[bot] about 1 year ago

#86 - what's the meaning of the naming convention for TFRecord files

Issue - State: open - Opened by liuyx599 about 1 year ago - 7 comments

#85 - [NumPy] Fix test failure in connectomics under NumPy 1.25.

Pull Request - State: closed - Opened by copybara-service[bot] about 1 year ago

#84 - Add materialize_tensor.

Pull Request - State: closed - Opened by copybara-service[bot] about 1 year ago

#83 - Convert kvstore override to json.

Pull Request - State: closed - Opened by copybara-service[bot] about 1 year ago

#82 - Add decorators.

Pull Request - State: closed - Opened by copybara-service[bot] about 1 year ago

#81 - Add dataclasses-json to install_requires.

Pull Request - State: closed - Opened by copybara-service[bot] about 1 year ago