google-research/connectomics issues and pull requests

#113 - Add StdProjection to compute standard deviation over given dimension.

Pull Request - State: closed - Opened by copybara-service[bot] 3 months ago

#112 - Support schema with chunksizes set to `None`.

Pull Request - State: closed - Opened by copybara-service[bot] 3 months ago

#111 - Make bounding box errors more informative.

Pull Request - State: closed - Opened by copybara-service[bot] 4 months ago

#110 - Silence some pytype errors.

Pull Request - State: closed - Opened by copybara-service[bot] 5 months ago

#109 - Support adding custom search paths.

Pull Request - State: closed - Opened by copybara-service[bot] 5 months ago

#108 - union find test.

Pull Request - State: closed - Opened by copybara-service[bot] 5 months ago

#107 - Add more utils to connectomics/common and ffn/utils

Pull Request - State: closed - Opened by copybara-service[bot] 5 months ago

#106 - Add union_find and object_utils.

Pull Request - State: closed - Opened by copybara-service[bot] 5 months ago

#105 - Add SubvolumeProcessors for filling holes and merging internal objects.

Pull Request - State: closed - Opened by copybara-service[bot] 6 months ago

#104 - Move split_disconnected_components from FFN repo to connectomics.

Pull Request - State: closed - Opened by copybara-service[bot] 6 months ago

#103 - Add module for correcting merge errors based on subcompartment consistency.

Pull Request - State: closed - Opened by copybara-service[bot] 6 months ago

#102 - Add processors for contrast normalization.

Pull Request - State: closed - Opened by copybara-service[bot] 6 months ago

#101 - Add processors for image filtering.

Pull Request - State: closed - Opened by copybara-service[bot] 6 months ago

#100 - Keep indices in a dict.

Pull Request - State: closed - Opened by copybara-service[bot] 7 months ago

#99 - Add a function to build a RAG from a set of objects with associated spatial coordinates.

Pull Request - State: closed - Opened by copybara-service[bot] 7 months ago

#98 - Fix for `extra_flags=None`.

Pull Request - State: closed - Opened by copybara-service[bot] 7 months ago

#97 - Add Log1pFilter, ScaleFilter, and ZScoreFilter.

Pull Request - State: closed - Opened by copybara-service[bot] 7 months ago

#96 - Ensure single truth-value.

Pull Request - State: closed - Opened by copybara-service[bot] 7 months ago

#95 - Changes to schema adjustment utilities.

Pull Request - State: closed - Opened by copybara-service[bot] 7 months ago

#94 - Allow passing extra flags.

Pull Request - State: closed - Opened by copybara-service[bot] 7 months ago

#93 - Add support for multirun pipelines.

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#92 - Update reader.py

Pull Request - State: open - Opened by pan25-1 10 months ago - 1 comment

#91 - Make downsampling configuration more flexible to support zarr.

Pull Request - State: closed - Opened by copybara-service[bot] 10 months ago

#90 - Add standardization decorator with externally computed mean and standard deviation.

Pull Request - State: closed - Opened by copybara-service[bot] 10 months ago - 1 comment

#89 - Add clipping decorator.

Pull Request - State: closed - Opened by copybara-service[bot] 10 months ago - 1 comment

#88 - Add .editorconfig.

Pull Request - State: closed - Opened by copybara-service[bot] 11 months ago

#87 - Add pyink default settings.

Pull Request - State: closed - Opened by copybara-service[bot] 11 months ago

#86 - what's the meaning of the naming convention for TFRecord files

Issue - State: open - Opened by liuyx599 11 months ago - 7 comments

#85 - [NumPy] Fix test failure in connectomics under NumPy 1.25.

Pull Request - State: closed - Opened by copybara-service[bot] 12 months ago

#84 - Add materialize_tensor.

Pull Request - State: closed - Opened by copybara-service[bot] 12 months ago

#83 - Convert kvstore override to json.

Pull Request - State: closed - Opened by copybara-service[bot] 12 months ago

#82 - Add decorators.

Pull Request - State: closed - Opened by copybara-service[bot] 12 months ago

#81 - Add dataclasses-json to install_requires.

Pull Request - State: closed - Opened by copybara-service[bot] 12 months ago

#80 - Is there a Docker image for running SegClr?

Issue - State: closed - Opened by liuyx599 12 months ago - 1 comment

#79 - Add beam, metadata, and ts utils.

Pull Request - State: closed - Opened by copybara-service[bot] about 1 year ago

#78 - Add gin, jax, and opencv utils.

Pull Request - State: closed - Opened by copybara-service[bot] about 1 year ago

#77 - Rename decorator to tsv_decorator.

Pull Request - State: closed - Opened by copybara-service[bot] about 1 year ago

#76 - Change BoxGenerator behavior so that if overlap >= outer_box.size it will still generate 1 box instead of 0.

Pull Request - State: closed - Opened by copybara-service[bot] about 1 year ago

#75 - Bugfix stripping.

Pull Request - State: closed - Opened by copybara-service[bot] about 1 year ago

#74 - Add SegCLR TF2 data_augmentation_util and data_input_util.

Pull Request - State: closed - Opened by copybara-service[bot] about 1 year ago

#73 - Fix typos.

Pull Request - State: closed - Opened by copybara-service[bot] about 1 year ago

#72 - Add SegCLR TF2 model code.

Pull Request - State: closed - Opened by copybara-service[bot] about 1 year ago

#71 - Update to non-deprecated skimage APIs.

Pull Request - State: closed - Opened by copybara-service[bot] over 1 year ago

#70 - Fix pytype failures related to teaching pytype about NumPy scalar types.

Pull Request - State: closed - Opened by copybara-service[bot] over 1 year ago

#69 - Add a ThreadsafeCounterStore for tracking processing.

Pull Request - State: closed - Opened by copybara-service[bot] over 1 year ago

#68 - Fix skimage dependency spec.

Pull Request - State: closed - Opened by copybara-service[bot] over 1 year ago

#67 - Add a processor for rendering stitched 3d tiles.

Pull Request - State: closed - Opened by copybara-service[bot] over 1 year ago

#66 - Additional python 3.8 typing compatibility fixes.

Pull Request - State: closed - Opened by copybara-service[bot] over 1 year ago

#65 - Move inference model builder from demo notebook to module.

Pull Request - State: closed - Opened by copybara-service[bot] over 1 year ago

#64 - Add reader module for accessing SegCLR data released in CSV ZIP archives on GCS.

Pull Request - State: closed - Opened by copybara-service[bot] over 1 year ago

#63 - Fix return value ordering in docstring.

Pull Request - State: closed - Opened by copybara-service[bot] over 1 year ago

#62 - Make BoundingBox hashable.

Pull Request - State: closed - Opened by copybara-service[bot] over 1 year ago

#61 - Use standard box generation pathway in overlapping_boxes.

Pull Request - State: closed - Opened by copybara-service[bot] over 1 year ago

#60 - Further fixes for python 3.8 support. Turns out the `future` package only applies to _annotations_, not type aliases :(

Pull Request - State: closed - Opened by copybara-service[bot] over 1 year ago

#59 - Add 3.8 typing support for array.py

Pull Request - State: closed - Opened by copybara-service[bot] over 1 year ago

#58 - Refer to wiki from README for SegCLR Colab demo notebooks.

Pull Request - State: closed - Opened by copybara-service[bot] over 1 year ago

#57 - Add SegCLR embedding model modules, fix sklearn require.

Pull Request - State: closed - Opened by copybara-service[bot] over 1 year ago

#56 - Make type annotations compatible with python<=3.8, second commit.

Pull Request - State: closed - Opened by copybara-service[bot] over 1 year ago

#55 - Make type annotations compatible with python<=3.8.

Pull Request - State: closed - Opened by copybara-service[bot] over 1 year ago

#54 - Add classifier training modules to SegCLR.

Pull Request - State: closed - Opened by copybara-service[bot] over 1 year ago

#53 - Add the watershed_expand and erode functions.

Pull Request - State: closed - Opened by copybara-service[bot] over 1 year ago