google/fhir-py issues and pull requests

#345 - Bump Python protobuf dependency to 4.x

Pull Request - State: open - Opened by copybara-service[bot] 2 months ago

#344 - Adds primitive regex validation on choice types.

Pull Request - State: closed - Opened by copybara-service[bot] 3 months ago

#343 - Changes regex info memoization to memoize on type code rather than element id, since regex info for a given type is always the same, regardless of element. In addition to resulting in many more cache hits, this helps enable choice type regex, where a given element may have several regexes associated with choice types.

Pull Request - State: closed - Opened by copybara-service[bot] 3 months ago

#342 - Adds SQL support for validating datatype (but not yet primitive) options for choice types. For instance, this will validate that Observation.effectivePeriod is a valid period (including that regex for start and end, as will as the constraint that start is before endtime. However, this does not yet validate primitive options, for instance that Observation.effectiveDateTime is a valid datetime.

Pull Request - State: closed - Opened by copybara-service[bot] 3 months ago

#341 - Simplifies primitive regex sql generation by having encode_element_definition_of_builder encode primitive regex itself rather than its children. This has no effect on generated SQL

Pull Request - State: closed - Opened by copybara-service[bot] 3 months ago

#340 - Removes overbroad and obsolete skip on fields named "link" in fhirpath validations.

Pull Request - State: closed - Opened by copybara-service[bot] 3 months ago

#339 - fixes typo reference to out-of-scope variable. This can modify a validation column name in a twice-sliced path (e.g., Observation.component:SystolicBP.code.coding:SBPCode), but is otherwise a no-op.

Pull Request - State: closed - Opened by copybara-service[bot] 3 months ago

#338 - Refactors primitive regex generation into a submethod that operates on a single primitive element. This is a no-op refactor.

Pull Request - State: closed - Opened by copybara-service[bot] 4 months ago

#337 - Added support for the terminology service client to use token authentication.

Pull Request - State: closed - Opened by michealharrington 4 months ago - 6 comments

#336 - Adds an v5.0.0 enum to the R4 FHIR Versions codesystem. This smooths a lot of issues for interversion support by allowing R5 resources to parse into R4 protos if all other fields are compatible.

Pull Request - State: closed - Opened by copybara-service[bot] 4 months ago

#335 - Silence some pytype errors.

Pull Request - State: closed - Opened by copybara-service[bot] 5 months ago

#334 - Expand ResourceId Columns for Reference(Any) Fields

Pull Request - State: closed - Opened by copybara-service[bot] 5 months ago

#333 - Fix typo in comments of `Instant` definition: mircoseconds --> microseconds

Pull Request - State: closed - Opened by copybara-service[bot] 5 months ago - 1 comment

#332 - Fixes python crash that occurs if a JSON file in a FHIR package is not an object.

Pull Request - State: closed - Opened by copybara-service[bot] 5 months ago

#331 - Avoid Enforcement of Constraints Referencing 'Resource' Fields

Pull Request - State: closed - Opened by copybara-service[bot] 5 months ago

#330 - Avoid Enforcement of Constraints Referencing 'extension' Fields

Pull Request - State: closed - Opened by copybara-service[bot] 5 months ago

#329 - Raise Error When Generating SQL Selecting a Reference(Any) Field

Pull Request - State: closed - Opened by copybara-service[bot] 5 months ago

#328 - Make Slice Constraints Top-Level

Pull Request - State: closed - Opened by copybara-service[bot] 6 months ago

#327 - Qualify Access to Un-Nested Elements

Pull Request - State: closed - Opened by copybara-service[bot] 6 months ago

#326 - support for FHIR R5?

Issue - State: open - Opened by DiTo97 6 months ago

#325 - Runs proto generation script at head to pick up a change to filtered FhirPath expression on appointment.

Pull Request - State: closed - Opened by copybara-service[bot] 6 months ago

#324 - Skip Resource Types

Pull Request - State: closed - Opened by copybara-service[bot] 6 months ago

#323 - Use string method to convert json to proto

Pull Request - State: closed - Opened by copybara-service[bot] 7 months ago

#322 - Handle code matches in the python interpreter

Pull Request - State: closed - Opened by copybara-service[bot] 7 months ago

#321 - Add basic auth to fhir_client

Pull Request - State: closed - Opened by copybara-service[bot] 7 months ago

#320 - Remove References to v2

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#320 - Remove References to v2

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#319 - Propagate Parent Element Definitions Through Child Structure Definitions

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#318 - Remove V1 SQL Generation Libraries

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#317 - Remove V1 SQL Generation From BigQuery Runner

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#317 - Remove V1 SQL Generation From BigQuery Runner

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#316 - run pyformat

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#316 - run pyformat

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#316 - run pyformat

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#315 - Compute Cardinality of Slices on Extension Correctly

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#314 - Store _child_defs as Dictionary, Remove Redundant _direct_children

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#313 - Remove V1 SQL Generation From fhir_path_test

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#312 - Sync additional tests to GitHub and add doc on FHIR library usage.

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#311 - Update type annotation for compatibility with pandas 2.0

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago - 1 comment

#310 - Using Fhir views with BigQuery and Extensions

Issue - State: open - Opened by LoZZT 8 months ago

#309 - Bump Python protobuf dependency to 4.x

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#308 - Remove JSON name that caused a collision the Python 4.* protobuf library.

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#307 - Remove Python dependency on JSON name that creates a collision.

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#306 - Silence some pytype errors.

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#306 - Silence some pytype errors.

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#305 - Fix forEach + Support SQL-on-FHIR v2 on Spark

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#304 - compatibility with google-fhir

Issue - State: closed - Opened by Hotrank 8 months ago - 5 comments

#304 - compatibility with google-fhir

Issue - State: open - Opened by Hotrank 8 months ago

#303 - In Spark, remove ambiguity when creating a view consisting of invocations of the same name. e.g qrs.item.item

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#303 - In Spark, remove ambiguity when creating a view consisting of invocations of the same name. e.g qrs.item.item

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#302 - Fix visit_equality in Spark for it to work when a non_scalar is compared to a literal

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#301 - Add initial FHIR search runner

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#300 - Resolve error: "'Engine' object has no attribute 'cursor'" when running Spark

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#299 - Use V2 by Default in BigQuery Runner

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#298 - Improve Cardinality Documentation

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#297 - Set Cardinality of ReferenceNodes Inside Where and All Calls to Scalar

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#296 - run pyformat

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago

#295 - Correct return_type of UnionNodes to Collection

Pull Request - State: closed - Opened by copybara-service[bot] 8 months ago