google/fhir-data-pipes issues and pull requests

#1044 - Various documentations

Issue - State: open - Opened by bashir2 7 months ago
Labels: documentation, P2:should

#1043 - Add last run time and purging schedule to the pipeline contoller UI

Issue - State: open - Opened by machariamuguku 7 months ago

#1042 - add config to override the default 100 batch size for server queries

Issue - State: open - Opened by machariamuguku 7 months ago

#1041 - Add config to change the pipeline controller cron schedule timezone

Issue - State: open - Opened by machariamuguku 7 months ago

#1040 - Bump commons-codec:commons-codec from 1.16.1 to 1.17.0

Pull Request - State: open - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#1039 - Bump org.apache.maven.plugins:maven-shade-plugin from 3.5.2 to 3.5.3

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#1038 - Bump com.google.api-client:google-api-client-gson from 2.4.0 to 2.4.1

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#1037 - Bump org.apache.maven.plugins:maven-deploy-plugin from 3.1.1 to 3.1.2

Pull Request - State: open - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#1036 - Bump org.apache.maven.plugins:maven-install-plugin from 3.1.1 to 3.1.2

Pull Request - State: open - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#1035 - Bump com.google.apis:google-api-services-healthcare from v1-rev20240312-2.0.0 to v1-rev20240425-2.0.0

Pull Request - State: open - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#1034 - Bump net.alchim31.maven:scala-maven-plugin from 4.8.1 to 4.9.0

Pull Request - State: open - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#1033 - Added fhirVersion to SoFv2 tests and fixed report format

Pull Request - State: closed - Opened by bashir2 7 months ago - 2 comments

#1032 - Generated SQL-on-FHIR-v2 test results and updated tests

Pull Request - State: closed - Opened by bashir2 7 months ago - 1 comment

#1031 - Integrate FHIR Bulk export API with data-pipes

Issue - State: open - Opened by chandrashekar-s 7 months ago

#1030 - Bump org.apache.maven.plugins:maven-jar-plugin from 3.4.0 to 3.4.1

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#1029 - Bump ch.qos.logback:logback-classic from 1.5.5 to 1.5.6

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#1028 - Bump org.apache.maven.plugins:maven-gpg-plugin from 3.2.3 to 3.2.4

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#1027 - NPE while trying to find StructureDefinition for a resource extensions that is missing.

Issue - State: open - Opened by bashir2 8 months ago
Labels: bug, P1:must

#1026 - Merges StructureDefinition paths, adds `recursiveDepth` option, and makes ID columns consistent

Pull Request - State: closed - Opened by bashir2 8 months ago - 3 comments

#1025 - Come up with a common parquet schema for the sql-on-FHIR v1 type

Issue - State: open - Opened by chandrashekar-s 8 months ago
Labels: P2:should

#1024 - FhirEtl with DataflowRunner does not produce Parquet files

Issue - State: open - Opened by jakubadamek 8 months ago - 5 comments
Labels: bug

#1023 - Bump commons-io:commons-io from 2.15.1 to 2.16.1

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#1022 - Bump org.slf4j:slf4j-api from 2.0.12 to 2.0.13

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies

#1021 - Bump ch.qos.logback:logback-classic from 1.5.3 to 1.5.5

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#1020 - Bump org.apache.maven.plugins:maven-gpg-plugin from 3.2.1 to 3.2.3

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies

#1019 - Bump org.apache.maven.plugins:maven-jar-plugin from 3.3.0 to 3.4.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#1018 - Bump org.apache.maven.plugins:maven-scm-plugin from 2.0.1 to 2.1.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#1017 - Avoid resetting connections to mitigate thrift server errors.

Pull Request - State: closed - Opened by bashir2 8 months ago - 1 comment

#1016 - Bump org.apache.maven.plugins:maven-source-plugin from 3.3.0 to 3.3.1

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies

#1015 - Bump org.jacoco:jacoco-maven-plugin from 0.8.11 to 0.8.12

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies

#1014 - `text` field is lost when the Hapi object is converted to `Avro`

Issue - State: open - Opened by chandrashekar-s 8 months ago - 1 comment
Labels: bug, P2:should

#1013 - Feature Request: Requires Delta Data to be retained in incremental Snapshots

Issue - State: open - Opened by Charantl 8 months ago

#1012 - Data retrieved from the Hapi JPA Database only includes the latest information, with no historical data being fetched

Issue - State: open - Opened by Charantl 8 months ago - 1 comment
Labels: enhancement, P3:TBE

#1011 - Support for storing parquet files in AWS S3 is not available

Issue - State: open - Opened by Charantl 8 months ago

#1010 - In the ViewDefinition editor, add an option for fetching resources from the FHIR server

Issue - State: open - Opened by bashir2 8 months ago
Labels: enhancement, P3:TBE

#1009 - Added support to read FHIR resources from NDJson file

Pull Request - State: closed - Opened by chandrashekar-s 8 months ago - 1 comment

#1008 - Bump org.apache.hive:hive-jdbc from 3.1.3 to 4.0.0

Pull Request - State: open - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies

#1007 - Bump commons-io:commons-io from 2.15.1 to 2.16.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies

#1006 - Bump org.apache.maven.plugins:maven-gpg-plugin from 3.2.1 to 3.2.2

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies

#1005 - Bump version.camel from 3.2.0 to 4.5.0

Pull Request - State: open - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#1004 - Adds ViewDefinition for all sample flat views

Pull Request - State: closed - Opened by bashir2 8 months ago - 1 comment

#1003 - Keep the resource IDs consistent when the objects are converted from HAPI->Avro->HAPI.

Issue - State: open - Opened by chandrashekar-s 8 months ago - 1 comment
Labels: bug, P2:should

#1002 - Bump com.google.apis:google-api-services-healthcare from v1-rev20240220-2.0.0 to v1-rev20240312-2.0.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#1001 - Bump org.apache.hadoop:hadoop-common from 3.3.6 to 3.4.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#1000 - Bump org.apache.hadoop:hadoop-client from 3.3.6 to 3.4.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies

#999 - Bump org.apache.hadoop:hadoop-mapreduce-client-app from 3.3.6 to 3.4.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#998 - Bump org.projectlombok:lombok from 1.18.30 to 1.18.32

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#997 - Bump org.apache.maven.plugins:maven-compiler-plugin from 3.12.1 to 3.13.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#996 - Added a simple ViewDefinition edit environment

Pull Request - State: closed - Opened by bashir2 9 months ago - 1 comment

#995 - Minimal support for ViewDefinition authoring

Issue - State: closed - Opened by bashir2 9 months ago
Labels: enhancement, P2:should

#994 - Bump org.apache.maven.plugins:maven-gpg-plugin from 3.1.0 to 3.2.1

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#993 - Bump org.apache.maven.plugins:maven-gpg-plugin from 3.1.0 to 3.2.0

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#992 - Bump com.fasterxml.jackson.module:jackson-module-scala_2.11 from 2.16.2 to 2.17.0

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#991 - Bump version.camel from 3.2.0 to 4.4.1

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#990 - Bump com.google.api-client:google-api-client-gson from 2.3.0 to 2.4.0

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#989 - Bump org.postgresql:postgresql from 42.7.2 to 42.7.3

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#988 - Added SQL-on-FHIR v2 repo tests

Pull Request - State: closed - Opened by bashir2 9 months ago - 1 comment

#987 - Experiment with DuckDB and compare with single-node Spark

Issue - State: open - Opened by bashir2 9 months ago
Labels: documentation, enhancement, P2:should

#986 - Support for multiple FHIR profile extensions

Pull Request - State: closed - Opened by chandrashekar-s 9 months ago - 4 comments

#985 - Bump com.fasterxml.jackson.core:jackson-core from 2.16.1 to 2.17.0

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#984 - Bump com.fasterxml.jackson.module:jackson-module-scala_2.11 from 2.16.1 to 2.16.2

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#983 - Bump com.fasterxml.jackson.core:jackson-core from 2.16.1 to 2.16.2

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#982 - Bump hapi.fhir.version from 6.10.4 to 7.0.2

Pull Request - State: open - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#981 - Deploying Spark fails with insufficient max JVM memory

Issue - State: open - Opened by jakubadamek 9 months ago - 2 comments

#980 - Create a generic solution for supporting multiple extensions for same resource type

Issue - State: closed - Opened by chandrashekar-s 9 months ago
Labels: P1:must

#979 - updated codecov badge

Pull Request - State: closed - Opened by bashir2 9 months ago - 2 comments

#978 - Create ViewDefinition equivalent of all sample flat views

Issue - State: closed - Opened by bashir2 9 months ago
Labels: enhancement, P2:should

#977 - Bump ch.qos.logback:logback-classic from 1.4.11 to 1.5.3

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#976 - Bump com.mchange:c3p0 from 0.10.0-pre4 to 0.10.0-pre7

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#975 - Bump com.google.apis:google-api-services-healthcare from v1-rev20240130-2.0.0 to v1-rev20240220-2.0.0

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#974 - Bump ch.qos.logback:logback-classic from 1.4.11 to 1.5.2

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#973 - added codecov GH action

Pull Request - State: closed - Opened by bashir2 9 months ago - 7 comments

#972 - Minor change/fix in default memory

Pull Request - State: closed - Opened by bashir2 9 months ago

#969 - Fix for logback version upgrade

Pull Request - State: closed - Opened by chandrashekar-s 9 months ago - 2 comments

#968 - Compare Spark+Parquet with PostgreSQL/Alloy DB view based approaches

Issue - State: open - Opened by bashir2 9 months ago - 2 comments
Labels: enhancement, good first issue, P2:should

#961 - Provide Support for non-local references linked via the `contentReference` tag in the StructureDefinition files

Issue - State: open - Opened by chandrashekar-s 9 months ago - 1 comment

#960 - Pending issues on supporting custom FHIR profiles

Issue - State: closed - Opened by chandrashekar-s 9 months ago - 3 comments
Labels: bug, P1:must

#956 - Bump version.camel from 3.2.0 to 4.4.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 2 comments
Labels: dependencies

#954 - Integrate sql-on-fhir-v2 repo tests

Issue - State: closed - Opened by bashir2 10 months ago
Labels: enhancement, good first issue, P2:should

#953 - replaces the spinner GIF with CSS

Pull Request - State: closed - Opened by bashir2 10 months ago - 2 comments

#949 - Bump hapi.fhir.version from 6.10.4 to 7.0.0

Pull Request - State: open - Opened by dependabot[bot] 10 months ago
Labels: dependencies

#947 - Added FHIR Sink Config Properties to the Pipeline Controller

Pull Request - State: open - Opened by mozzy11 10 months ago - 11 comments

#928 - Bump com.google.oauth-client:google-oauth-client from 1.34.1 to 1.35.0

Pull Request - State: open - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#927 - Bump org.springframework.boot:spring-boot-dependencies from 3.1.5 to 3.2.2

Pull Request - State: open - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#926 - Resolves https://github.com/google/fhir-data-pipes/issues/925

Pull Request - State: open - Opened by muhammad-levi 11 months ago - 2 comments

#925 - The JSON of FHIR Resource that is not compressed (res_encoding = `JSON`) is stored in `res_text_vc` column, not in `res_text`, caused NPE

Issue - State: open - Opened by muhammad-levi 11 months ago

GitHub / google/fhir-data-pipes issues and pull requests