goekelab/sg-nex-data issues and pull requests

#72 - question about sequin concentration

Issue - State: open - Opened by sparthib 5 days ago

#71 - fix update in genome browser link format

Pull Request - State: open - Opened by cying111 about 1 month ago

#71 - fix update in genome browser link format

Pull Request - State: open - Opened by cying111 about 1 month ago

#70 - merge recent changes

Pull Request - State: closed - Opened by cying111 about 1 month ago

#70 - merge recent changes

Pull Request - State: closed - Opened by cying111 about 1 month ago

#68 - Workshop3

Pull Request - State: closed - Opened by jonathangoeke 3 months ago

#68 - Workshop3

Pull Request - State: closed - Opened by jonathangoeke 3 months ago

#67 - update to master

Pull Request - State: closed - Opened by jonathangoeke 3 months ago

#67 - update to master

Pull Request - State: closed - Opened by jonathangoeke 3 months ago

#66 - Are there tissue samples available?

Issue - State: open - Opened by jackwgoodall 4 months ago - 1 comment

#66 - Are there tissue samples available?

Issue - State: open - Opened by jackwgoodall 4 months ago - 1 comment

#65 - Errors in the augmented annotation GTF file

Issue - State: open - Opened by rob-p 5 months ago - 1 comment

#65 - Errors in the augmented annotation GTF file

Issue - State: open - Opened by rob-p 5 months ago - 1 comment

#64 - Possible mixup of Illumina short read data Hct116 and HepG2

Issue - State: closed - Opened by syrahfong 5 months ago

#64 - Possible mixup of Illumina short read data Hct116 and HepG2

Issue - State: closed - Opened by syrahfong 5 months ago

#63 - add links to other files for the new RNA004 sample

Pull Request - State: closed - Opened by cying111 7 months ago

#63 - add links to other files for the new RNA004 sample

Pull Request - State: closed - Opened by cying111 7 months ago

#62 - update readme GoekeLab/update_readme

Pull Request - State: closed - Opened by cying111 7 months ago

#62 - update readme GoekeLab/update_readme

Pull Request - State: closed - Opened by cying111 7 months ago

#61 - update release to include the RNA004 sample

Pull Request - State: closed - Opened by cying111 7 months ago

#61 - update release to include the RNA004 sample

Pull Request - State: closed - Opened by cying111 7 months ago

#60 - update readme branch

Pull Request - State: closed - Opened by cying111 7 months ago

#60 - update readme branch

Pull Request - State: closed - Opened by cying111 7 months ago

#58 - update some small details

Pull Request - State: closed - Opened by cying111 9 months ago

#58 - update some small details

Pull Request - State: closed - Opened by cying111 9 months ago

#57 - pr for the new update release

Pull Request - State: closed - Opened by cying111 9 months ago

#57 - pr for the new update release

Pull Request - State: closed - Opened by cying111 9 months ago

#56 - keep updated with master branch

Pull Request - State: closed - Opened by cying111 10 months ago

#56 - keep updated with master branch

Pull Request - State: closed - Opened by cying111 10 months ago

#55 - Naming of samples

Issue - State: open - Opened by Kiliankleemann 12 months ago - 2 comments

#55 - Naming of samples

Issue - State: open - Opened by Kiliankleemann 12 months ago - 2 comments

#54 - No download for fastq

Issue - State: open - Opened by Kiliankleemann 12 months ago - 2 comments

#54 - No download for fastq

Issue - State: open - Opened by Kiliankleemann 12 months ago - 2 comments

#53 - RNA004 data

Issue - State: open - Opened by ChaseWLW 12 months ago - 2 comments
Labels: enhancement

#53 - RNA004 data

Issue - State: open - Opened by ChaseWLW 12 months ago - 2 comments
Labels: enhancement

#52 - Create CODE_OF_CONDUCT.md

Pull Request - State: closed - Opened by jonathangoeke about 1 year ago

#52 - Create CODE_OF_CONDUCT.md

Pull Request - State: closed - Opened by jonathangoeke about 1 year ago

#51 - Update readme

Pull Request - State: closed - Opened by cying111 about 1 year ago

#51 - Update readme

Pull Request - State: closed - Opened by cying111 about 1 year ago

#50 - update update_readme branch

Pull Request - State: closed - Opened by cying111 about 1 year ago

#50 - update update_readme branch

Pull Request - State: closed - Opened by cying111 about 1 year ago

#49 - Identification of m6A with the SG-NEx samples

Issue - State: open - Opened by VikArz02 about 1 year ago - 1 comment

#49 - Identification of m6A with the SG-NEx samples

Issue - State: open - Opened by VikArz02 about 1 year ago - 1 comment

#48 - add spike-in information

Pull Request - State: closed - Opened by cying111 about 1 year ago

#48 - add spike-in information

Pull Request - State: closed - Opened by cying111 about 1 year ago

#47 - update readme branch

Pull Request - State: closed - Opened by cying111 about 1 year ago

#47 - update readme branch

Pull Request - State: closed - Opened by cying111 about 1 year ago

#46 - Added a tutorial for NanoCount

Pull Request - State: closed - Opened by josiegleeson about 1 year ago - 1 comment

#46 - Added a tutorial for NanoCount

Pull Request - State: closed - Opened by josiegleeson about 1 year ago - 1 comment

#45 - Sequin spike-in reference

Issue - State: closed - Opened by zzare-umd about 1 year ago - 4 comments

#45 - Sequin spike-in reference

Issue - State: closed - Opened by zzare-umd about 1 year ago - 4 comments

#44 - add the tutorial for IsoTools

Pull Request - State: closed - Opened by YalanBi about 1 year ago - 1 comment

#44 - add the tutorial for IsoTools

Pull Request - State: closed - Opened by YalanBi about 1 year ago - 1 comment

#43 - add workshop 3 google colab

Pull Request - State: closed - Opened by jonathangoeke about 1 year ago

#43 - add workshop 3 google colab

Pull Request - State: closed - Opened by jonathangoeke about 1 year ago

#42 - Create workflow_longReadRNASeq.nf

Pull Request - State: closed - Opened by jonathangoeke about 1 year ago

#42 - Create workflow_longReadRNASeq.nf

Pull Request - State: closed - Opened by jonathangoeke about 1 year ago

#41 - Update readme

Pull Request - State: closed - Opened by cying111 about 1 year ago

#41 - Update readme

Pull Request - State: closed - Opened by cying111 about 1 year ago

#40 - Add FLAIR tutorial

Pull Request - State: closed - Opened by cafelton over 1 year ago - 1 comment

#40 - Add FLAIR tutorial

Pull Request - State: closed - Opened by cafelton over 1 year ago - 1 comment

#39 - Add tutorial template

Pull Request - State: closed - Opened by cying111 over 1 year ago

#39 - Add tutorial template

Pull Request - State: closed - Opened by cying111 over 1 year ago

#38 - merge changes from master

Pull Request - State: closed - Opened by cying111 over 1 year ago

#38 - merge changes from master

Pull Request - State: closed - Opened by cying111 over 1 year ago

#37 - merge changes from master

Pull Request - State: closed - Opened by cying111 over 1 year ago

#37 - merge changes from master

Pull Request - State: closed - Opened by cying111 over 1 year ago

#36 - two fastq files were not correctly formated

Issue - State: open - Opened by alexyfyf over 1 year ago - 3 comments

#36 - two fastq files were not correctly formated

Issue - State: open - Opened by alexyfyf over 1 year ago - 3 comments

#35 - Add Google Colab for bambu tutorial

Pull Request - State: closed - Opened by N-Hoffmann over 1 year ago

#35 - Add Google Colab for bambu tutorial

Pull Request - State: closed - Opened by N-Hoffmann over 1 year ago

#33 - update master branch with blow5 tutorials

Pull Request - State: closed - Opened by cying111 over 1 year ago

#33 - update master branch with blow5 tutorials

Pull Request - State: closed - Opened by cying111 over 1 year ago

#32 - BLOW5 tutorials and edits - draft

Pull Request - State: closed - Opened by hasindu2008 over 1 year ago

#32 - BLOW5 tutorials and edits - draft

Pull Request - State: closed - Opened by hasindu2008 over 1 year ago

#31 - Two BLOW5 tutorials

Pull Request - State: closed - Opened by hasindu2008 almost 2 years ago - 2 comments

#30 - Raw data in BLOW5 format

Issue - State: closed - Opened by hasindu2008 about 2 years ago - 10 comments

#30 - Raw data in BLOW5 format

Issue - State: closed - Opened by hasindu2008 about 2 years ago - 10 comments

#27 - update fasta and gtf filename

Pull Request - State: closed - Opened by lingminhao over 2 years ago

#27 - update fasta and gtf filename

Pull Request - State: closed - Opened by lingminhao over 2 years ago

#26 - Update UCSC genome browser link

Pull Request - State: closed - Opened by cying111 over 2 years ago

#26 - Update UCSC genome browser link

Pull Request - State: closed - Opened by cying111 over 2 years ago

#25 - update update-docs-aws branch

Pull Request - State: closed - Opened by cying111 over 2 years ago

#25 - update update-docs-aws branch

Pull Request - State: closed - Opened by cying111 over 2 years ago

#24 - Update docs aws

Pull Request - State: closed - Opened by cying111 over 2 years ago

#24 - Update docs aws

Pull Request - State: closed - Opened by cying111 over 2 years ago

#23 - Add m6Anet, xPore and Bambu short tutorials

Pull Request - State: closed - Opened by cyusong over 2 years ago

#23 - Add m6Anet, xPore and Bambu short tutorials

Pull Request - State: closed - Opened by cyusong over 2 years ago

#22 - Update docs aws

Pull Request - State: closed - Opened by jonathangoeke over 2 years ago

#22 - Update docs aws

Pull Request - State: closed - Opened by jonathangoeke over 2 years ago

#21 - update documentation

Pull Request - State: closed - Opened by jonathangoeke over 2 years ago

#21 - update documentation

Pull Request - State: closed - Opened by jonathangoeke over 2 years ago

#20 - add xpore tutorial

Pull Request - State: closed - Opened by yuukiiwa over 2 years ago

#20 - add xpore tutorial

Pull Request - State: closed - Opened by yuukiiwa over 2 years ago

#19 - Questions about sequin used

Issue - State: open - Opened by Kyung-TaeLee almost 3 years ago - 2 comments

#19 - Questions about sequin used

Issue - State: open - Opened by Kyung-TaeLee almost 3 years ago - 2 comments

#18 - sample_id SGNex_MCF7-EV_directRNA_replicate2_run1 is duplicate

Issue - State: closed - Opened by aadali almost 3 years ago - 1 comment

#18 - sample_id SGNex_MCF7-EV_directRNA_replicate2_run1 is duplicate

Issue - State: closed - Opened by aadali almost 3 years ago - 1 comment

#16 - Update SGNEx_usecases.md

Pull Request - State: closed - Opened by jonathangoeke about 3 years ago

#16 - Update SGNEx_usecases.md

Pull Request - State: closed - Opened by jonathangoeke about 3 years ago

GitHub / goekelab/sg-nex-data issues and pull requests