gnames/gnames issues and pull requests

#107 - As a User of reconciliation service I want to get "good" results matching automatically

Issue - State: open - Opened by dimus over 1 year ago

#106 - As a User of reconciliation service I need documentation that explains its usage.

Issue - State: open - Opened by dimus over 1 year ago

#105 - As a User of reconciliation service I want to receive additional information after reconciliation

Issue - State: open - Opened by dimus over 1 year ago

#104 - As a User of reconciliation service I want to be able to limit results to certain data-sources

Issue - State: closed - Opened by dimus over 1 year ago

#103 - As a User of reconciliation service I want to have name-strings organized into lexical groups

Issue - State: closed - Opened by dimus over 1 year ago

#102 - As a User of OpenRefine reconciliation service API I need the service manifest

Issue - State: closed - Opened by dimus over 1 year ago

#101 - Create an OpenRefine endpoint & add to user documentation

Issue - State: closed - Opened by dshorthouse about 2 years ago - 21 comments

#100 - As a User I want to have an endpoint for name_string IDs

Issue - State: closed - Opened by dimus over 1 year ago

#99 - As a Developer I want to refactor code to a more standard dir structure

Issue - State: closed - Opened by dimus over 1 year ago

#98 - Provide v1 API for gnverifier

Issue - State: closed - Opened by dimus about 2 years ago - 1 comment

#97 - `n:Schiz. sabul` returns lower score as first result

Issue - State: open - Opened by dimus over 2 years ago
Labels: bug

#96 - Wrong sorting for names with infraspecific rank and fuzzy matching

Issue - State: closed - Opened by dimus over 2 years ago - 1 comment

#95 - When search is limited to some databases, the results are not complete.

Issue - State: closed - Opened by dimus over 2 years ago - 2 comments

#94 - Synonyms genera

Issue - State: closed - Opened by Adafede over 2 years ago - 2 comments
Labels: bug

#92 - add dataSourcesList next to dataSourcesNum

Issue - State: closed - Opened by abubelinha over 2 years ago - 3 comments

#90 - No results for `Teucrium pyrenaicum subsp. guarense`

Issue - State: closed - Opened by dimus over 2 years ago - 1 comment

#89 - As a User I want to see the score as one number

Issue - State: closed - Opened by dimus over 2 years ago

#88 - BestResult is redundant if WithAllMatches are set

Issue - State: closed - Opened by dimus over 2 years ago

#87 - Make sure that the "root" match type for a name always corresponds to the "BestMatch"

Issue - State: closed - Opened by dimus over 2 years ago

#86 - put in sync WithAllMatches, DataSources input fields for verificaton and search

Issue - State: closed - Opened by dimus over 2 years ago

#85 - Search sometimes ignores Taxon option

Issue - State: closed - Opened by dimus over 2 years ago

#84 - matchType for name and bestResult are not always equal

Issue - State: closed - Opened by dimus over 2 years ago
Labels: bug

#83 - what is names[x].matchType?

Issue - State: closed - Opened by abubelinha almost 3 years ago - 3 comments

#82 - Exact match returns variations in suffixes (exact match by stem)

Issue - State: closed - Opened by dimus almost 3 years ago - 5 comments

#81 - Add optional filters for NSQ logs

Issue - State: closed - Opened by dimus almost 3 years ago

#80 - Provide more information to NSQ logs

Issue - State: closed - Opened by dimus almost 3 years ago

#79 - Overload for names is triggered for every name, if a lot of names are given at the same time

Issue - State: closed - Opened by dimus almost 3 years ago - 1 comment
Labels: bug

#78 - As a DevOp I want logs to be sent to NSQ messaging service

Issue - State: closed - Opened by dimus almost 3 years ago

#77 - As a User I want to verify virus names

Issue - State: closed - Opened by dimus almost 3 years ago

#76 - Missing column in table

Issue - State: closed - Opened by abrami almost 3 years ago - 2 comments

#75 - As a User I want details of the score for each result.

Issue - State: closed - Opened by dimus almost 3 years ago

#74 - `Trichomanes bifidum Willd` verif does not provide correct result

Issue - State: closed - Opened by dimus almost 3 years ago - 1 comment

#73 - As a User I want to have an ability to filter faceted search results by more than one data-source

Issue - State: closed - Opened by dimus almost 3 years ago

#72 - replicate gnames services at a very small and local scale

Issue - State: closed - Opened by abubelinha almost 3 years ago - 4 comments
Labels: enhancement, help wanted

#71 - As a User I need a language for faceted search

Issue - State: closed - Opened by dimus about 3 years ago - 1 comment

#70 - When returning all sources, keep results sorted by score

Issue - State: closed - Opened by dimus about 3 years ago

#69 - As a User I want to have an option to see all results of matching, not just the best ones

Issue - State: closed - Opened by dimus about 3 years ago - 1 comment

#68 - Data sources do not show

Issue - State: closed - Opened by dimus about 3 years ago
Labels: bug

#67 - As a User I want the service to capitalize first letter of a name, if possible

Issue - State: closed - Opened by dimus over 3 years ago
Labels: enhancement

#65 - As a User I do not want my requests become 'stale'

Issue - State: closed - Opened by dimus over 3 years ago

#64 - As a User I want to know which (public) version of the taxonomical database was used for matching names

Issue - State: open - Opened by Adafede almost 4 years ago - 1 comment

#63 - As a Developer I want requests to stop running if a client does not need them anymore

Issue - State: closed - Opened by dimus almost 4 years ago - 1 comment
Labels: duplicate

#62 - As a Developer I want to use most recent version of gnparser in the code.

Issue - State: closed - Opened by dimus almost 4 years ago

#61 - As a User I want to see not only ranks of a classification path, but also all the RecordIDs that correspond to each classification element.

Issue - State: closed - Opened by dimus almost 4 years ago - 1 comment
Labels: enhancement

#59 - As a Developer I want to use interfaces for scores to bring it in line with other components

Issue - State: closed - Opened by dimus almost 4 years ago

#58 - As a User I do not want to have strains of bacteria in my results.

Issue - State: closed - Opened by dimus almost 4 years ago - 1 comment
Labels: duplicate

#57 - Find why there is a memory leak in gnames

Issue - State: closed - Opened by dimus almost 4 years ago - 1 comment
Labels: bug

#56 - As a User I want to get data from very slow queries fast enough.

Issue - State: closed - Opened by dimus almost 4 years ago

#55 - Blocking bugs cleanup

Issue - State: closed - Opened by dimus almost 4 years ago
Labels: Epic

#54 - As a User and Developer I want better documentation for gnames (readme and code)

Issue - State: closed - Opened by dimus almost 4 years ago

#53 - Add Get endpoint for verifications

Issue - State: closed - Opened by dimus almost 4 years ago

#52 - As a User I want to get BestResult to take in account the quality of parsing of a matching string.

Issue - State: closed - Opened by dimus almost 4 years ago

#51 - As a User I want an option to know the context of matched names

Issue - State: closed - Opened by dimus almost 4 years ago

#50 - As a User I do not want to think about collation when I install postgresql database

Issue - State: closed - Opened by dimus almost 4 years ago - 1 comment

#48 - As an API User, I want a simple get method to add a name or serveral names and get a result.

Issue - State: closed - Opened by dimus almost 4 years ago - 1 comment
Labels: duplicate

#47 - As a User I want to know which data-sources are reasonable to show as external links

Issue - State: closed - Opened by dimus almost 4 years ago

#46 - As a User I want to get outlink URLs to records in data-sources where it is possible

Issue - State: closed - Opened by dimus almost 4 years ago

#45 - As a User I want to have a tidier DataSource output

Issue - State: closed - Opened by dimus almost 4 years ago

#44 - As a User I want API for gnames to have a production server

Issue - State: closed - Opened by dimus almost 4 years ago

#43 - As an API user I want an access to OpenAPI documentation

Issue - State: closed - Opened by dimus almost 4 years ago

#42 - Clean up architecture with refactoring

Issue - State: closed - Opened by dimus almost 4 years ago

#41 - Update gnames to gnmatcher v0.3.6

Issue - State: closed - Opened by dimus almost 4 years ago

#40 - As a Developer I want to refactor entity dependencies to gnlib to remove circular dependencies

Issue - State: closed - Opened by dimus about 4 years ago

#38 - "Acacia vestita may" should have a partial match as "Acacia vestita"

Issue - State: closed - Opened by dimus about 4 years ago
Labels: bug

#36 - "Abras precatorius" has fuzzy matches with 1 and 2 edit distance. Algorithm should prefer min edit distance. Currently it prefers ED 2 over ED1

Issue - State: closed - Opened by dimus about 4 years ago
Labels: bug

#35 - As a User I prefer to a match that has authors to a match without them

Issue - State: closed - Opened by dimus about 4 years ago

#34 - As a User I want simple and fast generator of UUIDs library

Issue - State: closed - Opened by dimus about 4 years ago

#33 - If accepted name is not parseable, it should not break verification

Issue - State: closed - Opened by dimus about 4 years ago
Labels: bug

#32 - Names that did match by gnmatcher, but not found in databae should change status no NoMatch

Issue - State: closed - Opened by dimus about 4 years ago
Labels: bug

#31 - As a User I want optimized verification process, so it happens as fast as it is possible with current architecture.

Issue - State: closed - Opened by dimus about 4 years ago

#30 - As a User I want a flexibility to use gnames directly if I have an access to its database.

Issue - State: closed - Opened by dimus about 4 years ago - 1 comment
Labels: wontfix

#28 - As a User I want reasonable best match output from real data

Issue - State: closed - Opened by dimus about 4 years ago

#27 - Web User Interface

Issue - State: closed - Opened by dimus about 4 years ago - 1 comment
Labels: Epic

#26 - Vernacular names, filtered search

Issue - State: open - Opened by dimus about 4 years ago
Labels: Epic

#25 - As a User I want to have accurate fully functional output (not optimized)

Issue - State: closed - Opened by dimus about 4 years ago - 1 comment

#24 - As a User I want functional preferred data sources results

Issue - State: closed - Opened by dimus about 4 years ago

#23 - As a Developer I want to have flexibility in using gnmatcher functionality.

Issue - State: closed - Opened by dimus about 4 years ago

#22 - As a User I want to use gnames locally

Issue - State: open - Opened by dimus about 4 years ago - 28 comments

#21 - As a Developer I want to have a cleaner architecture of components that are based on interfaces.

Issue - State: closed - Opened by dimus about 4 years ago

#20 - As a User for best result I want to return the "acceptedName" from taxonomy-aware data sources.

Issue - State: closed - Opened by dimus about 4 years ago - 1 comment

#19 - As a User I want matching quality to be part of the Best Match Decision

Issue - State: closed - Opened by dimus about 4 years ago

#18 - As a User I want a Score system that would combine different decisions together

Issue - State: closed - Opened by dimus about 4 years ago

#17 - As a User I want rank to be part of the Best Match decision

Issue - State: closed - Opened by dimus about 4 years ago

#16 - As a User I want Authorship be a part of best match decision

Issue - State: closed - Opened by dimus about 4 years ago

#15 - As a User I want to add Curation to best match decision

Issue - State: closed - Opened by dimus about 4 years ago

#14 - As a User I want to get one "fake" best result from HTTP API per name.

Issue - State: closed - Opened by dimus about 4 years ago

#13 - As a User I want go get DataSources metadata via HTTP API

Issue - State: closed - Opened by dimus about 4 years ago

#12 - Switch from gnindex to gnames

Issue - State: closed - Opened by dimus about 4 years ago - 1 comment
Labels: Epic

#11 - gnames first functional release

Issue - State: closed - Opened by dimus about 4 years ago
Labels: Epic

#10 - gnames best match

Issue - State: closed - Opened by dimus about 4 years ago
Labels: Epic

#9 - gnames input/output

Issue - State: closed - Opened by dimus about 4 years ago
Labels: Epic

#8 - As a User I want flexibility of serialization via JSON or Gob

Issue - State: closed - Opened by dimus about 4 years ago

#7 - Combine gnmatcher with gnames

Issue - State: closed - Opened by dimus about 4 years ago
Labels: duplicate

#6 - As a Developer I want to switch to pure Go from protobuf for describing API of gnames

Issue - State: closed - Opened by dimus about 4 years ago

#5 - As a User I need to connect to gnmatcher algorithms

Issue - State: closed - Opened by dimus about 4 years ago

#4 - As a User I want to be able to sent names data via JSON-based REST interface

Issue - State: closed - Opened by dimus about 4 years ago

#3 - As a Developer I need a testing framework for HTTP API

Issue - State: closed - Opened by dimus about 4 years ago

#2 - gnmatcher service

Issue - State: closed - Opened by dimus about 4 years ago
Labels: Epic

#1 - As a User I need a reasonable plan for a minimal input and output of the service, that can be expanded in the future.

Issue - State: closed - Opened by dimus over 4 years ago

GitHub / gnames/gnames issues and pull requests