gmod/apollo3 issues and pull requests

#432 - Add ability for indexed sequence file to be uploaded and used in an assembly

Pull Request - State: closed - Opened by garrettjstevens 5 months ago - 1 comment

#432 - Add ability for indexed sequence file to be uploaded and used in an assembly

Pull Request - State: closed - Opened by garrettjstevens 5 months ago - 1 comment

#430 - Add package for website

Pull Request - State: closed - Opened by garrettjstevens 5 months ago

#430 - Add package for website

Pull Request - State: closed - Opened by garrettjstevens 5 months ago

#429 - Create tests for feature importing

Issue - State: closed - Opened by garrettjstevens 5 months ago - 1 comment

#429 - Create tests for feature importing

Issue - State: closed - Opened by garrettjstevens 5 months ago - 1 comment

#428 - Incorrect representation when CDS has no parent exon

Issue - State: open - Opened by dariober 5 months ago

#428 - Incorrect representation when CDS has no parent exon

Issue - State: open - Opened by dariober 5 months ago

#427 - "Download GFF3" omits `Parent` and resets `score` and `source`

Issue - State: open - Opened by dariober 5 months ago

#427 - "Download GFF3" omits `Parent` and resets `score` and `source`

Issue - State: closed - Opened by dariober 5 months ago

#426 - Update CLI to work with new feature model

Pull Request - State: closed - Opened by dariober 5 months ago

#426 - Update CLI to work with new feature model

Pull Request - State: closed - Opened by dariober 5 months ago

#425 - mRNA with no exon or CDS

Issue - State: open - Opened by dariober 5 months ago

#425 - mRNA with no exon or CDS

Issue - State: open - Opened by dariober 5 months ago

#424 - Replace wrapLines with maxWidth

Issue - State: closed - Opened by garrettjstevens 5 months ago

#424 - Replace wrapLines with maxWidth

Issue - State: closed - Opened by garrettjstevens 5 months ago

#423 - Standardize feature import

Pull Request - State: closed - Opened by garrettjstevens 5 months ago

#423 - Standardize feature import

Pull Request - State: closed - Opened by garrettjstevens 5 months ago

#422 - CDS check fix

Pull Request - State: closed - Opened by shashankbrgowda 6 months ago

#422 - CDS check fix

Pull Request - State: closed - Opened by shashankbrgowda 6 months ago

#419 - Add ability to define custom aliases for refSeq names

Pull Request - State: closed - Opened by shashankbrgowda 6 months ago - 1 comment

#419 - Add ability to define custom aliases for refSeq names

Pull Request - State: closed - Opened by shashankbrgowda 6 months ago - 1 comment

#418 - Add ability to define custom aliases for refSeq names

Issue - State: closed - Opened by garrettjstevens 6 months ago

#418 - Add ability to define custom aliases for refSeq names

Issue - State: closed - Opened by garrettjstevens 6 months ago

#407 - Allow uploaded files to be already gzipped

Issue - State: closed - Opened by garrettjstevens 7 months ago

#407 - Allow uploaded files to be already gzipped

Issue - State: closed - Opened by garrettjstevens 7 months ago

#406 - Add ability to upload a file and use it as a non-editable sequence for an assembly

Issue - State: closed - Opened by garrettjstevens 7 months ago

#406 - Add ability to upload a file and use it as a non-editable sequence for an assembly

Issue - State: closed - Opened by garrettjstevens 7 months ago

#405 - Allow uploading file separately from adding assembly in CLI

Issue - State: closed - Opened by garrettjstevens 7 months ago

#405 - Allow uploading file separately from adding assembly in CLI

Issue - State: closed - Opened by garrettjstevens 7 months ago

#403 - gene without children is invisible

Issue - State: closed - Opened by dariober 7 months ago - 1 comment

#403 - gene without children is invisible

Issue - State: closed - Opened by dariober 7 months ago - 1 comment

#402 - Feature model widgets

Pull Request - State: closed - Opened by kyostiebi 7 months ago - 1 comment

#402 - Feature model widgets

Pull Request - State: closed - Opened by kyostiebi 7 months ago - 1 comment

#398 - CLI logging and error handling improvements

Issue - State: closed - Opened by garrettjstevens 8 months ago - 1 comment

#398 - CLI logging and error handling improvements

Issue - State: closed - Opened by garrettjstevens 8 months ago - 1 comment

#394 - Use `conf` package for CLI config file

Issue - State: closed - Opened by garrettjstevens 8 months ago - 3 comments

#394 - Use `conf` package for CLI config file

Issue - State: closed - Opened by garrettjstevens 8 months ago - 3 comments

#384 - Load local GFF3 using new annotation feature format

Issue - State: closed - Opened by garrettjstevens 9 months ago - 1 comment

#384 - Load local GFF3 using new annotation feature format

Issue - State: closed - Opened by garrettjstevens 9 months ago - 1 comment

#381 - Standardize gene representation

Issue - State: closed - Opened by garrettjstevens 10 months ago - 4 comments

#381 - Standardize gene representation

Issue - State: closed - Opened by garrettjstevens 10 months ago - 4 comments

#378 - Google OAuth not working

Issue - State: open - Opened by johannesnicolaus 10 months ago - 1 comment

#377 - Deploy to demo server on version tag

Issue - State: closed - Opened by garrettjstevens 10 months ago - 1 comment

#377 - Deploy to demo server on version tag

Issue - State: closed - Opened by garrettjstevens 10 months ago - 1 comment

#373 - Data setup documentation

Issue - State: open - Opened by garrettjstevens 10 months ago - 3 comments

#373 - Data setup documentation

Issue - State: open - Opened by garrettjstevens 10 months ago - 3 comments

#372 - Add new deployment docs

Pull Request - State: closed - Opened by garrettjstevens 10 months ago - 1 comment

#372 - Add new deployment docs

Pull Request - State: closed - Opened by garrettjstevens 10 months ago - 1 comment

#365 - Investigate deploying to remote host with Docker Compose from GitHub Actions

Issue - State: closed - Opened by garrettjstevens 11 months ago - 2 comments

#365 - Investigate deploying to remote host with Docker Compose from GitHub Actions

Issue - State: closed - Opened by garrettjstevens 11 months ago - 2 comments

#362 - `getFeatures` always returns an array of two arrays

Issue - State: open - Opened by dariober 11 months ago - 2 comments

#362 - `getFeatures` always returns an array of two arrays

Issue - State: open - Opened by dariober 11 months ago - 2 comments

#361 - Add ability to get parent ID in feature from features endpoint

Pull Request - State: closed - Opened by shashankbrgowda 11 months ago - 1 comment

#361 - Add ability to get parent ID in feature from features endpoint

Pull Request - State: closed - Opened by shashankbrgowda 11 months ago - 1 comment

#359 - Serve config.json from the collaboration server

Issue - State: closed - Opened by garrettjstevens 12 months ago - 4 comments

#359 - Serve config.json from the collaboration server

Issue - State: closed - Opened by garrettjstevens 12 months ago - 4 comments

#358 - Serve JBrowse static files from collaboration server

Issue - State: closed - Opened by garrettjstevens 12 months ago - 2 comments

#358 - Serve JBrowse static files from collaboration server

Issue - State: closed - Opened by garrettjstevens 12 months ago - 2 comments

#357 - Add ability to get parent ID in feature from features endpoint

Issue - State: closed - Opened by garrettjstevens 12 months ago - 3 comments