Ecosyste.ms: Issues

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GitHub / gmod/apollo3 issues and pull requests

#507 - Address issue #504

Pull Request - State: open - Opened by dariober 17 days ago - 1 comment

#506 - Warnings do not disappear after fixing a feature

Issue - State: open - Opened by dariober 22 days ago
Labels: bug

#505 - Python to typescript

Pull Request - State: open - Opened by dariober 22 days ago

#503 - Add a notification for updating for admin users

Issue - State: open - Opened by ChrisChilders-USDA about 1 month ago

#502 - Fix checks getting deleted sometimes

Pull Request - State: closed - Opened by garrettjstevens about 1 month ago

#501 - CLI: Better error when loading plain fasta

Issue - State: open - Opened by dariober about 1 month ago
Labels: bug

#500 - Cypress fix drawer

Pull Request - State: closed - Opened by dariober about 1 month ago

#498 - Fix closing drawer in cypress tests

Pull Request - State: closed - Opened by dariober about 2 months ago

#497 - Failing Cypress tests

Issue - State: closed - Opened by garrettjstevens about 2 months ago - 1 comment
Labels: bug

#496 - Add startup docs to website

Pull Request - State: closed - Opened by garrettjstevens about 2 months ago

#495 - Edit how to add evidence tracks jbrowse; Edit header

Pull Request - State: closed - Opened by dariober about 2 months ago

#494 - Add images to quick-start annotation guide

Pull Request - State: closed - Opened by dariober about 2 months ago - 1 comment

#493 - Add issue templates

Pull Request - State: closed - Opened by garrettjstevens about 2 months ago

#493 - Add issue templates

Pull Request - State: closed - Opened by garrettjstevens about 2 months ago

#492 - Import gff3 wo exons #491

Pull Request - State: open - Opened by dariober about 2 months ago

#491 - Synthesize exons when they are not included in the input GFF3

Issue - State: open - Opened by garrettjstevens about 2 months ago - 1 comment

#490 - Remove ROOT_USER_NAME

Pull Request - State: closed - Opened by garrettjstevens about 2 months ago

#489 - Make sure LocalFile handles get closed

Pull Request - State: closed - Opened by garrettjstevens about 2 months ago - 3 comments

#488 - Close LocalFileGzip after reading it

Pull Request - State: closed - Opened by garrettjstevens 2 months ago - 1 comment

#486 - Add protein sequence to transcript detail panel

Pull Request - State: open - Opened by shashankbrgowda 2 months ago

#484 - Fix occasional error in LocalFileGzip read

Pull Request - State: closed - Opened by garrettjstevens 2 months ago

#482 - Feedback ontology loading

Pull Request - State: open - Opened by dariober 2 months ago - 2 comments

#481 - Create tests for conversion to GFF3

Issue - State: closed - Opened by garrettjstevens 2 months ago

#479 - Update to latest eslint

Pull Request - State: closed - Opened by garrettjstevens 2 months ago

#478 - Bugfix- Fetch parent feature using topLevel flag

Pull Request - State: closed - Opened by shashankbrgowda 3 months ago - 5 comments

#477 - 452 reactive sync ontology

Pull Request - State: open - Opened by dariober 3 months ago

#474 - Transcript widget upates

Pull Request - State: closed - Opened by garrettjstevens 3 months ago

#473 - Copy feature from evidence gene track

Pull Request - State: closed - Opened by shashankbrgowda 3 months ago

#472 - Make feature type ontology configurable

Pull Request - State: closed - Opened by garrettjstevens 3 months ago

#470 - Remove unwanted (?!) keys in output jbrowse config

Pull Request - State: closed - Opened by dariober 3 months ago - 1 comment

#469 - Add filtering to LinearApolloDisplay

Pull Request - State: open - Opened by shashankbrgowda 3 months ago

#467 - Cancel requests when scrolling past a section

Issue - State: open - Opened by garrettjstevens 4 months ago - 1 comment

#465 - Don't fetch sequence when zoomed out in Apollo Track

Pull Request - State: closed - Opened by shashankbrgowda 4 months ago

#464 - Draw background on genes

Pull Request - State: closed - Opened by shashankbrgowda 4 months ago

#462 - Draw background on genes

Issue - State: closed - Opened by garrettjstevens 4 months ago

#461 - Add configuration options for visibility of track's graphical and table views

Pull Request - State: closed - Opened by shashankbrgowda 4 months ago - 3 comments

#461 - Add configuration options for visibility of track's graphical and table views

Pull Request - State: closed - Opened by shashankbrgowda 4 months ago - 3 comments

#460 - Make clicking on introns in gene glyph select the mRNA

Pull Request - State: closed - Opened by shashankbrgowda 4 months ago

#459 - Display message if sequence ontology is unavailable (#453)

Pull Request - State: closed - Opened by dariober 4 months ago

#458 - Make ontology for feature types configurable

Issue - State: closed - Opened by garrettjstevens 4 months ago - 2 comments

#457 - Provide feedback that an ontology is being loaded

Issue - State: open - Opened by garrettjstevens 4 months ago - 1 comment

#456 - Add ability to get parent feature from features endpoint

Pull Request - State: closed - Opened by shashankbrgowda 4 months ago

#456 - Add ability to get parent feature from features endpoint

Pull Request - State: closed - Opened by shashankbrgowda 4 months ago

#455 - Dockerfile for apollo collaboration server fails to build on Mac

Pull Request - State: open - Opened by shashankbrgowda 4 months ago - 6 comments

#455 - Dockerfile for apollo collaboration server fails to build on Mac

Pull Request - State: open - Opened by shashankbrgowda 4 months ago - 6 comments

#452 - Extend and improve ontology usage throughout the code

Issue - State: open - Opened by garrettjstevens 4 months ago - 1 comment

#450 - Add filtering to LinearApolloDisplay

Issue - State: open - Opened by garrettjstevens 4 months ago - 1 comment

#450 - Add filtering to LinearApolloDisplay

Issue - State: open - Opened by garrettjstevens 4 months ago - 1 comment

#449 - Filter features on import

Issue - State: open - Opened by garrettjstevens 4 months ago

#449 - Filter features on import

Issue - State: open - Opened by garrettjstevens 4 months ago

#448 - Highlight search result feature

Issue - State: open - Opened by garrettjstevens 4 months ago

#448 - Highlight search result feature

Issue - State: open - Opened by garrettjstevens 4 months ago

#447 - Copy feature from evidence track

Issue - State: closed - Opened by garrettjstevens 4 months ago - 1 comment

#446 - cli to download features as gff3

Issue - State: open - Opened by dariober 4 months ago

#446 - cli to download features as gff3

Issue - State: open - Opened by dariober 4 months ago

#444 - Simplify the `getAccess` method in the CLI

Pull Request - State: closed - Opened by garrettjstevens 4 months ago - 2 comments

#444 - Simplify the `getAccess` method in the CLI

Pull Request - State: closed - Opened by garrettjstevens 4 months ago - 2 comments

#443 - Set status to 0 for relevant change types

Pull Request - State: closed - Opened by shashankbrgowda 5 months ago

#443 - Set status to 0 for relevant change types

Pull Request - State: closed - Opened by shashankbrgowda 5 months ago

#442 - Fix converted GFF3 properties

Pull Request - State: closed - Opened by garrettjstevens 5 months ago - 1 comment

#442 - Fix converted GFF3 properties

Pull Request - State: closed - Opened by garrettjstevens 5 months ago - 1 comment

#441 - Add feature import conversion tests

Pull Request - State: closed - Opened by dariober 5 months ago

#441 - Add feature import conversion tests

Pull Request - State: closed - Opened by dariober 5 months ago

#440 - Render operons

Issue - State: open - Opened by garrettjstevens 5 months ago

#440 - Render operons

Issue - State: open - Opened by garrettjstevens 5 months ago

#439 - Evidence track edge matching highlights

Issue - State: open - Opened by garrettjstevens 5 months ago

#439 - Evidence track edge matching highlights

Issue - State: open - Opened by garrettjstevens 5 months ago - 2 comments

#438 - Save/Remove multiple tracks at once from track widget

Pull Request - State: closed - Opened by shashankbrgowda 5 months ago - 1 comment

#438 - Save/Remove multiple tracks at once from track widget

Pull Request - State: closed - Opened by shashankbrgowda 5 months ago - 1 comment

#436 - Setting the status to 0 causes high latency

Issue - State: closed - Opened by shashankbrgowda 5 months ago - 1 comment

#436 - Setting the status to 0 causes high latency

Issue - State: closed - Opened by shashankbrgowda 5 months ago - 1 comment

#434 - Add UI to update stored JBrowse config

Issue - State: open - Opened by garrettjstevens 5 months ago

#434 - Add UI to update stored JBrowse config

Issue - State: open - Opened by garrettjstevens 5 months ago