Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / glotzerlab/garnett issues and pull requests

#166 - Support GSD 3.0

Issue - State: open - Opened by tommy-waltmann over 1 year ago
Labels: bug

#165 - Cif scaling

Pull Request - State: open - Opened by klarh over 1 year ago

#164 - CI deploy key not enabled for this repository

Issue - State: open - Opened by klarh over 1 year ago
Labels: bug

#163 - Update usage of `read_frame` when reading hoomd trajectories

Issue - State: open - Opened by tommy-waltmann almost 2 years ago
Labels: bug

#162 - Fix frame ordering in GTAR-format files

Pull Request - State: closed - Opened by klarh almost 3 years ago - 6 comments

#161 - Skip writing attributes that aren't present in frames in GetarFileWriter

Pull Request - State: closed - Opened by klarh over 4 years ago - 1 comment

#160 - Modernize DCD Reader's use of NumPy

Issue - State: open - Opened by bdice over 4 years ago
Labels: enhancement

#159 - Add badges for PyPI / conda-forge, etc.

Issue - State: open - Opened by bdice over 4 years ago
Labels: enhancement

#158 - Release/0.7.1

Pull Request - State: closed - Opened by bdice over 4 years ago - 1 comment

#157 - Clarify dependencies

Pull Request - State: closed - Opened by bdice over 4 years ago - 1 comment
Labels: bug

#156 - Release/v0.7.0

Pull Request - State: closed - Opened by bdice over 4 years ago - 4 comments

#155 - Revised FrameData and snapshot API, added integration tests.

Pull Request - State: closed - Opened by bdice over 4 years ago - 1 comment
Labels: enhancement

#154 - Some documentation cleanup before 0.7.0.

Pull Request - State: closed - Opened by bdice over 4 years ago - 1 comment
Labels: documentation

#153 - Fix type subsetting in to_plato_scene.

Pull Request - State: closed - Opened by bdice over 4 years ago
Labels: bug

#152 - Update CI & Deployment

Pull Request - State: closed - Opened by bdice over 4 years ago - 1 comment
Labels: enhancement

#151 - Improve CIF _atom_site_label type handling

Pull Request - State: closed - Opened by bdice over 4 years ago - 1 comment
Labels: enhancement

#150 - type_shape for sphere unions

Pull Request - State: closed - Opened by lyrivera over 4 years ago - 2 comments

#149 - Enable trajectory property for box objects

Pull Request - State: closed - Opened by lyrivera over 4 years ago
Labels: enhancement

#148 - Update GetarFileReader to use the last index present for each quantity.

Pull Request - State: closed - Opened by klarh over 4 years ago - 2 comments

#147 - Use types and typeid properties consistent with HOOMD

Pull Request - State: closed - Opened by bdice over 4 years ago - 6 comments
Labels: enhancement

#146 - Miscellaneous improvements

Pull Request - State: closed - Opened by lyrivera over 4 years ago

#145 - Update GSD reader to use the GSD v2.0.0 API

Pull Request - State: closed - Opened by lyrivera almost 5 years ago - 3 comments

#144 - Refactor hoomd snapshot methods in the Frame and Trajectory classes

Pull Request - State: closed - Opened by lyrivera almost 5 years ago - 1 comment
Labels: enhancement

#143 - Add cif spg key

Pull Request - State: closed - Opened by lyrivera almost 5 years ago - 1 comment

#142 - Improve merging of points in CIF files

Pull Request - State: closed - Opened by klarh almost 5 years ago

#141 - Add another source of cif file space group symmetry operations

Pull Request - State: closed - Opened by klarh almost 5 years ago - 2 comments

#140 - Update GSD reader/writer for GSD 2.0

Issue - State: closed - Opened by bdice almost 5 years ago - 1 comment
Labels: enhancement

#139 - Make FrameData private and merge _RawFrameData and FrameData

Issue - State: closed - Opened by klywang almost 5 years ago
Labels: question, refactor

#138 - Refactor and test hoomd snapshot functions in the Frame and Trajectory class

Issue - State: closed - Opened by klywang almost 5 years ago
Labels: unittest, refactor

#137 - Use types and typeid properties consistent with HOOMD

Issue - State: closed - Opened by bdice almost 5 years ago - 4 comments
Labels: enhancement

#136 - Enable templates for DCD files in garnett.read.

Pull Request - State: closed - Opened by bdice almost 5 years ago - 6 comments
Labels: enhancement

#135 - Add option to explicitly set number of dimensions on read/write (specific use case: DCD)

Issue - State: open - Opened by shannon-moran almost 5 years ago - 2 comments
Labels: enhancement

#134 - Change Trajectory and Frame API to be consistent with HOOMD conventions

Pull Request - State: closed - Opened by gaofy95 almost 5 years ago - 4 comments
Labels: enhancement

#133 - Enable/read user defined logged quantities from GSD files.

Issue - State: closed - Opened by lyrivera about 5 years ago - 4 comments
Labels: enhancement

#132 - release/v0.6.1

Pull Request - State: closed - Opened by lyrivera about 5 years ago

#131 - release/v0.6.0

Pull Request - State: closed - Opened by lyrivera about 5 years ago

#130 - Update contributors for v0.6.0

Pull Request - State: closed - Opened by bdice about 5 years ago

#129 - Properly write default shape into POS files

Pull Request - State: closed - Opened by lyrivera about 5 years ago - 3 comments

#128 - Release/v0.6.0

Pull Request - State: closed - Opened by lyrivera about 5 years ago - 4 comments

#127 - Add support for GSD shape specification

Pull Request - State: closed - Opened by bdice about 5 years ago - 1 comment
Labels: enhancement, writer, trajectory, reader

#126 - Fixed plato box primitive.

Pull Request - State: closed - Opened by bdice about 5 years ago - 1 comment

#125 - Simpler fix for left-handed box

Pull Request - State: closed - Opened by vyasr about 5 years ago - 4 comments

#124 - Skip showEdges token when reading POS files

Pull Request - State: closed - Opened by lyrivera about 5 years ago - 1 comment

#123 - __main__ entry point for file conversion

Issue - State: open - Opened by bdice about 5 years ago - 3 comments
Labels: enhancement

#122 - Drop Python 2.x support

Pull Request - State: closed - Opened by lyrivera about 5 years ago

#121 - Fix box regularization

Pull Request - State: closed - Opened by lyrivera about 5 years ago - 9 comments

#120 - Feature/to plato scene

Pull Request - State: closed - Opened by bdice about 5 years ago - 2 comments

#119 - Release/v0.5.0

Pull Request - State: closed - Opened by bdice about 5 years ago

#118 - Use pip requirements for all CI dependencies

Pull Request - State: closed - Opened by bdice over 5 years ago - 1 comment

#117 - Change CI GSD & GTAR install method

Pull Request - State: closed - Opened by lyrivera over 5 years ago - 1 comment

#116 - Box regularization yields wrong orientations

Issue - State: open - Opened by lyrivera over 5 years ago - 2 comments
Labels: bug

#115 - Old Links

Issue - State: closed - Opened by j-proc over 5 years ago - 6 comments
Labels: bug, minor

#114 - Added headings and badges to documentation, updated README to match.

Pull Request - State: closed - Opened by bdice over 5 years ago

#113 - Added some badges.

Pull Request - State: closed - Opened by bdice over 5 years ago

#112 - Update readthedocs.yml

Pull Request - State: closed - Opened by bdice over 5 years ago - 3 comments

#111 - Update readthedocs.yml

Pull Request - State: closed - Opened by bdice over 5 years ago - 1 comment

#110 - Build documentation on ReadTheDocs

Pull Request - State: closed - Opened by lyrivera over 5 years ago - 4 comments

#109 - Test for trajectory with varying number of particles per frame

Issue - State: open - Opened by lyrivera over 5 years ago
Labels: enhancement

#108 - Trajectory attribute for all box objects

Issue - State: closed - Opened by bdice over 5 years ago - 2 comments
Labels: enhancement

#107 - Update changelog

Pull Request - State: closed - Opened by klywang over 5 years ago - 5 comments

#106 - Update documentation

Pull Request - State: closed - Opened by lyrivera over 5 years ago

#105 - Add github CODEOWNERS & PR/issues templates

Pull Request - State: closed - Opened by lyrivera over 5 years ago

#104 - Fix namespace for mock import of dcdreader in documentation

Pull Request - State: closed - Opened by klarh over 5 years ago - 2 comments

#103 - Add GitHub CODEOWNERS / PR, Issue templates

Issue - State: closed - Opened by bdice over 5 years ago

#102 - Rename to garnett in hidden configuration files.

Pull Request - State: closed - Opened by bdice over 5 years ago - 3 comments

#101 - Enable installation through pip and conda

Issue - State: closed - Opened by lyrivera over 5 years ago - 2 comments

#100 - Host documentation on ReadTheDocs

Issue - State: closed - Opened by bdice over 5 years ago

#99 - Add license headers to all scripts & source files

Pull Request - State: closed - Opened by lyrivera over 5 years ago - 2 comments

#98 - Doc/copyright michigan

Pull Request - State: closed - Opened by bdice over 5 years ago - 1 comment

#97 - Rename package to garnett.

Pull Request - State: closed - Opened by bdice over 5 years ago - 7 comments

#96 - Fix/cleanup repo root

Pull Request - State: closed - Opened by bdice over 5 years ago

#95 - Update credits.rst

Pull Request - State: closed - Opened by csadorf over 5 years ago

#94 - Improve/update examples

Pull Request - State: closed - Opened by lyrivera over 5 years ago - 3 comments

#93 - Raise attribute error when shapedef attribute is None

Pull Request - State: closed - Opened by lyrivera over 5 years ago

#91 - Revise development docs.

Pull Request - State: closed - Opened by bdice over 5 years ago - 1 comment

#90 - Remove formats

Pull Request - State: closed - Opened by bdice over 5 years ago

#89 - Refactor GSD into a hard/soft dependency

Issue - State: closed - Opened by bdice over 5 years ago - 7 comments
Labels: refactor

#88 - Update README.md

Pull Request - State: closed - Opened by klywang over 5 years ago - 8 comments

#87 - Update LICENSE.txt

Pull Request - State: closed - Opened by klywang over 5 years ago - 4 comments

#86 - Update contributor agreement to match other glotzerlab software.

Pull Request - State: closed - Opened by bdice over 5 years ago

#85 - Update CONTRIBUTING.md

Pull Request - State: closed - Opened by klywang over 5 years ago

#84 - Added bumpversion configuration file.

Pull Request - State: closed - Opened by bdice over 5 years ago
Labels: enhancement

#83 - Parse Polygons in 2D POS files

Pull Request - State: closed - Opened by bdice over 5 years ago
Labels: enhancement

#82 - Universal reader does not support templates for DCD files

Issue - State: closed - Opened by klywang over 5 years ago - 2 comments
Labels: minor, reader

#81 - Fixed logic in test_shapes.

Pull Request - State: closed - Opened by bdice over 5 years ago - 4 comments
Labels: bug

#80 - Traj attribute

Pull Request - State: closed - Opened by klywang over 5 years ago - 11 comments

#78 - Added image to GSD and getar writer

Pull Request - State: closed - Opened by klywang over 5 years ago - 2 comments

#76 - Change Trajectory and Frame API to be consistent with HOOMD conventions

Issue - State: closed - Opened by klywang over 5 years ago - 2 comments
Labels: trajectory, refactor

#75 - Add type_ids to Frame class

Issue - State: closed - Opened by klywang over 5 years ago - 1 comment
Labels: enhancement, trajectory

#74 - Set frame.types and traj.types to return unique list of ids

Issue - State: closed - Opened by klywang over 5 years ago - 1 comment
Labels: trajectory, refactor

#73 - Use data formats and names consistent with HOOMD

Issue - State: closed - Opened by klywang over 5 years ago - 8 comments
Labels: enhancement, question, refactor

#71 - Some unsupported properties of specific formats are set to default values

Issue - State: closed - Opened by lyrivera over 5 years ago - 5 comments

#70 - Raise attribute error when Trajectory attribute is not set

Issue - State: closed - Opened by lyrivera over 5 years ago - 1 comment

#65 - Raise attribute error when frame attributes are None

Pull Request - State: closed - Opened by lyrivera over 5 years ago

#59 - Drop python2 support

Issue - State: closed - Opened by lyrivera over 5 years ago - 2 comments
Labels: enhancement

#57 - shapedef = OrderedDict() instead of None for formats that do not support shape information

Issue - State: closed - Opened by lyrivera over 5 years ago - 3 comments
Labels: question

#56 - Review/update examples

Issue - State: closed - Opened by lyrivera over 5 years ago - 3 comments
Labels: minor

#54 - gsd reader does not set image attribute

Issue - State: closed - Opened by klywang over 5 years ago

#47 - Merge develop into master

Pull Request - State: closed - Opened by lyrivera over 5 years ago

#46 - Docs won't build with cython >=0.29.0

Issue - State: closed - Opened by bdice over 5 years ago - 4 comments