Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / globalbioticinteractions/nomer issues and pull requests

#170 - Bump org.htmlunit:htmlunit from 3.3.0 to 3.9.0 in /nomer-taxon-resolver

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#164 - wfo: species names only match when quoted

Issue - State: closed - Opened by jhpoelen 10 months ago - 3 comments

#162 - Querying catalog of lie for just higher taxonomy fails.

Issue - State: closed - Opened by whitfarnum 10 months ago - 7 comments
Labels: bug

#161 - Subgenus added to Discover Life

Issue - State: open - Opened by seltmann 10 months ago - 2 comments

#160 - adding an equivalent of alignedAuthority for parsed name

Issue - State: open - Opened by whitfarnum 11 months ago - 9 comments

#157 - add support for Sherman's BTA

Issue - State: open - Opened by jhpoelen about 1 year ago

#156 - add support for viral taxonomy for https://ictv.global/taxonomy

Issue - State: open - Opened by jhpoelen about 1 year ago - 2 comments

#153 - add support for Handbook Mammals of the World v2019

Issue - State: open - Opened by jhpoelen over 1 year ago

#152 - suggest to align taxonomies with Pipistrellus aegyptius (J. Fischer, 1829)

Issue - State: open - Opened by jhpoelen over 1 year ago - 1 comment

#151 - suggest to update batnames integration with their most recent 2023 release

Issue - State: open - Opened by jhpoelen over 1 year ago - 1 comment

#148 - add support for offline WoRMS matcher

Issue - State: open - Opened by jhpoelen over 1 year ago - 1 comment

#147 - add support for offline IRMNG matcher

Issue - State: open - Opened by jhpoelen over 1 year ago

#145 - Genbank Fixer Upper - Genbank Taxonomic Updater

Issue - State: open - Opened by jhpoelen over 1 year ago - 4 comments

#144 - add support for http://hesperomys.com/

Issue - State: open - Opened by jhpoelen over 1 year ago - 17 comments

#142 - I'd like to integrate the name alignment tool into my R script

Issue - State: open - Opened by jhpoelen over 1 year ago - 3 comments

#139 - revisit support for EOL's https://opendata.eol.org/dataset/identifier-map

Issue - State: open - Opened by jhpoelen over 1 year ago - 1 comment

#137 - expose taxonomic hierarchy inference made by GBIF parser

Issue - State: closed - Opened by jhpoelen over 1 year ago - 7 comments

#136 - Unrecognized Hybrids in Taxonomy

Issue - State: open - Opened by jtmiller28 over 1 year ago

#135 - New matcher to use Brazilian Flora 2020

Issue - State: open - Opened by zedomel over 1 year ago - 3 comments

#134 - Discoverlife subgenus names

Issue - State: open - Opened by seltmann over 1 year ago - 3 comments
Labels: Big-Bee

#133 - change name relations for Plazi from SAME_AS to OCCURS_IN

Issue - State: closed - Opened by jhpoelen over 1 year ago - 2 comments

#130 - include authorship in ITIS/GBIF index

Issue - State: closed - Opened by jhpoelen over 1 year ago - 1 comment

#129 - nomer 0.4.3 IOException when try to use globi-taxon-rank

Issue - State: closed - Opened by zedomel over 1 year ago - 4 comments
Labels: bug, help wanted

#128 - Parsing Names in a Hierarchical Fashion

Issue - State: open - Opened by jtmiller28 over 1 year ago - 3 comments

#127 - unexpected duplicates when matching [Homo sapiens] against ott

Issue - State: closed - Opened by jhpoelen over 1 year ago - 6 comments
Labels: bug

#125 - unexpected error on matching Homo sapiens against GloBI taxon graph

Issue - State: closed - Opened by jhpoelen over 1 year ago - 2 comments

#124 - inconsistent name alignment review for [Aglais io] using different versions of Catalogue of Life matcher

Issue - State: closed - Opened by jhpoelen over 1 year ago - 13 comments
Labels: external issue

#122 - OpenBiodiv returns http code 401 (unauthorized) when requesting query results

Issue - State: open - Opened by jhpoelen over 1 year ago - 9 comments
Labels: external issue

#121 - How to use nomer behind a proxy?

Issue - State: open - Opened by zedomel over 1 year ago - 7 comments
Labels: needs review

#120 - Including family as an output using properties

Issue - State: closed - Opened by jtmiller28 over 1 year ago - 5 comments

#118 - add support for Mammals Species of the World v3

Issue - State: open - Opened by jhpoelen over 1 year ago - 2 comments

#117 - suggest to support checklistbank

Issue - State: open - Opened by jhpoelen over 1 year ago - 3 comments

#116 - ,

Issue - State: closed - Opened by BarbaraMeulenbelt over 1 year ago

#113 - http://graph.openbiodiv.net/repositories/OpenBiodiv2020 does not appear to respond to queries

Issue - State: closed - Opened by jhpoelen almost 2 years ago - 1 comment
Labels: external issue

#112 - Suggest to include authorship past name parsing gn-parse, gbif-parse

Issue - State: closed - Opened by jtmiller28 almost 2 years ago - 7 comments
Labels: enhancement

#110 - Multiple Author Retrieval

Issue - State: closed - Opened by jtmiller28 almost 2 years ago - 10 comments
Labels: workaround exists

#109 - extract name relations used in synospecies

Issue - State: open - Opened by jhpoelen almost 2 years ago
Labels: enhancement

#108 - suggest to add support for mapping names to distribution maps

Issue - State: open - Opened by jhpoelen almost 2 years ago - 1 comment
Labels: enhancement

#107 - gn-parse makes designations into hybrids, tripping nomer to fail in resolution

Issue - State: open - Opened by jtmiller28 almost 2 years ago - 10 comments
Labels: discussion

#106 - Subspecies: designation as ssp. will trip alignment to NONE

Issue - State: closed - Opened by jtmiller28 almost 2 years ago - 1 comment

#105 - Support for misspellings in Nomer?

Issue - State: open - Opened by jtmiller28 almost 2 years ago - 7 comments
Labels: discussion

#104 - Inclusion of Authorship effect on name resolution?

Issue - State: closed - Opened by jtmiller28 almost 2 years ago - 11 comments
Labels: enhancement

#103 - wfo returning concerning warnings

Issue - State: closed - Opened by jtmiller28 almost 2 years ago - 7 comments
Labels: duplicate

#102 - suggest to turn https://www.wikidata.org/wiki/Property:P7715 (World of Flora Online) into an identifier for taxa

Issue - State: closed - Opened by jhpoelen almost 2 years ago - 3 comments
Labels: external issue

#101 - nomer crashes on [nomer ls wfo]

Issue - State: closed - Opened by jhpoelen almost 2 years ago - 2 comments
Labels: bug

#100 - accepting suggestions on how to handle "doubtful" name relations

Issue - State: open - Opened by jhpoelen almost 2 years ago - 33 comments
Labels: discussion

#99 - support matching against USDA Plants - USDA

Issue - State: open - Opened by jhpoelen almost 2 years ago
Labels: enhancement

#98 - suggest to support matching against World Checklist of Vascular Plants - WCVP

Issue - State: open - Opened by jhpoelen almost 2 years ago
Labels: enhancement

#97 - support to match names against https://ucjeps.berkeley.edu/eflora/

Issue - State: closed - Opened by jhpoelen almost 2 years ago - 3 comments
Labels: enhancement

#96 - add support for world of flora online

Issue - State: closed - Opened by jhpoelen almost 2 years ago - 5 comments
Labels: Big-Bee

#95 - add support for tropicos

Issue - State: open - Opened by jhpoelen almost 2 years ago
Labels: enhancement

#94 - suggest to support matching names against IUCN

Issue - State: open - Opened by jhpoelen almost 2 years ago
Labels: enhancement

#93 - suggest to use skos terms to express term relations

Issue - State: open - Opened by jhpoelen almost 2 years ago - 4 comments
Labels: enhancement

#92 - add support for https://avibase.bsc-eoc.org/species.jsp?avibaseid=BA247782

Issue - State: open - Opened by jhpoelen almost 2 years ago
Labels: enhancement

#91 - add support for indexing and matching against batnames.org

Issue - State: open - Opened by jhpoelen almost 2 years ago - 3 comments
Labels: enhancement

#89 - parsing timeout when using gbif-parse

Issue - State: open - Opened by jhpoelen almost 2 years ago - 9 comments
Labels: external issue

#86 - Repackaged Taxonomic Backbone of Global Biodiversity Information Facility (GBIF)

Issue - State: closed - Opened by zedomel about 2 years ago - 6 comments

#85 - nomer needs a logo

Issue - State: open - Opened by seltmann about 2 years ago - 1 comment
Labels: enhancement

#84 - How can I use nomer to translate verbatim names to normalized names?

Issue - State: closed - Opened by zedomel about 2 years ago - 2 comments

#83 - demonstrate progression of changes for Hipposideros caffer

Issue - State: open - Opened by jhpoelen about 2 years ago - 4 comments

#82 - support GADM locality name matching

Issue - State: open - Opened by jhpoelen about 2 years ago
Labels: enhancement

#81 - add copy-paste example in the man pages

Issue - State: open - Opened by jhpoelen about 2 years ago

#80 - add discover life to nomer corpus of taxonomic resources

Issue - State: open - Opened by jhpoelen about 2 years ago - 1 comment
Labels: enhancement

#79 - option --include-header no longer available in 0.2.12

Issue - State: closed - Opened by jhpoelen about 2 years ago - 1 comment

#78 - Implementation of fuzzy name match

Issue - State: open - Opened by zedomel over 2 years ago - 9 comments
Labels: enhancement

#77 - Catalogue of Life synonym relation direction appears reversed

Issue - State: closed - Opened by jhpoelen over 2 years ago - 1 comment

#76 - suggest to change name relation "NONE" to "NOT_FOUND"

Issue - State: open - Opened by jhpoelen over 2 years ago

#75 - Add citation for EOL Dynamic Hierarchy

Issue - State: open - Opened by KatjaSchulz over 2 years ago - 3 comments

#73 - use (dwca) checklist as nomer matcher

Issue - State: open - Opened by jhpoelen over 2 years ago - 5 comments
Labels: enhancement

#72 - Duplicate rows as seen by https://github.com/GlobalNamesArchitecture/dwca_hunter/issues/53

Issue - State: closed - Opened by seltmann over 2 years ago - 3 comments
Labels: needs review, Big-Bee

#71 - No result in IndexFungorum using wikidata-web

Issue - State: closed - Opened by nleguillarme over 2 years ago - 4 comments