Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / globalbioticinteractions/nomer issues and pull requests
#170 - Bump org.htmlunit:htmlunit from 3.3.0 to 3.9.0 in /nomer-taxon-resolver
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#169 - package nomer / nomer corpus as apptainer (formerly singularity)
Issue -
State: open - Opened by jhpoelen 8 months ago
#168 - suggest to add support to link to "LifeGate 2021 is an interactive two-dimensional phylogenetic map. It is an attempt to arrange all known species (2.6 million) phylogenetically in an interactive zoomable user interface."
Issue -
State: open - Opened by jhpoelen 9 months ago
Labels: enhancement
#167 - make discoverlife matches resolve higher order taxa, in addition to species
Issue -
State: open - Opened by jhpoelen 10 months ago
#166 - example of discoverlife homonym related to "Andrena supervirens"
Issue -
State: open - Opened by jhpoelen 10 months ago
#165 - discover life taxonomic path does not appear to include genus as separate entry
Issue -
State: closed - Opened by jhpoelen 10 months ago
- 2 comments
#164 - wfo: species names only match when quoted
Issue -
State: closed - Opened by jhpoelen 10 months ago
- 3 comments
#163 - replacing taxon names Catalogue of Life yields no results, whereas appending names does
Issue -
State: closed - Opened by jhpoelen 10 months ago
- 2 comments
#162 - Querying catalog of lie for just higher taxonomy fails.
Issue -
State: closed - Opened by whitfarnum 10 months ago
- 7 comments
Labels: bug
#161 - Subgenus added to Discover Life
Issue -
State: open - Opened by seltmann 10 months ago
- 2 comments
#160 - adding an equivalent of alignedAuthority for parsed name
Issue -
State: open - Opened by whitfarnum 11 months ago
- 9 comments
#159 - Better taxanomic resolution between family and genus on export by including SubFamily, Tribe, and Subtribe
Issue -
State: closed - Opened by whitfarnum 12 months ago
- 15 comments
#158 - add support for matching names to phylogeny tips provided by Upham et al. 2019
Issue -
State: open - Opened by jhpoelen about 1 year ago
- 7 comments
#157 - add support for Sherman's BTA
Issue -
State: open - Opened by jhpoelen about 1 year ago
#156 - add support for viral taxonomy for https://ictv.global/taxonomy
Issue -
State: open - Opened by jhpoelen about 1 year ago
- 2 comments
#155 - validate-terms fails on "new" schema that includes authorship
Issue -
State: open - Opened by jhpoelen over 1 year ago
#153 - add support for Handbook Mammals of the World v2019
Issue -
State: open - Opened by jhpoelen over 1 year ago
#152 - suggest to align taxonomies with Pipistrellus aegyptius (J. Fischer, 1829)
Issue -
State: open - Opened by jhpoelen over 1 year ago
- 1 comment
#151 - suggest to update batnames integration with their most recent 2023 release
Issue -
State: open - Opened by jhpoelen over 1 year ago
- 1 comment
#150 - Unable to link to DiscoverLife Species Page by copy-pasting URL from browser
Issue -
State: open - Opened by jhpoelen over 1 year ago
#149 - Some names (e.g., Ancylandrena atoposoma) are currently on DiscoverLife's active site but not matched in Nomer via discoverlife
Issue -
State: open - Opened by jtmiller28 over 1 year ago
- 26 comments
Labels: needs review
#148 - add support for offline WoRMS matcher
Issue -
State: open - Opened by jhpoelen over 1 year ago
- 1 comment
#147 - add support for offline IRMNG matcher
Issue -
State: open - Opened by jhpoelen over 1 year ago
#146 - Make information about the kakapo findable via Wikidata ID using an offline-wikidata matcher
Issue -
State: open - Opened by Daniel-Mietchen over 1 year ago
- 1 comment
#145 - Genbank Fixer Upper - Genbank Taxonomic Updater
Issue -
State: open - Opened by jhpoelen over 1 year ago
- 4 comments
#144 - add support for http://hesperomys.com/
Issue -
State: open - Opened by jhpoelen over 1 year ago
- 17 comments
#143 - facilitate name matching by adding ability to "stem" names to help match gendered names
Issue -
State: open - Opened by jhpoelen over 1 year ago
- 6 comments
#142 - I'd like to integrate the name alignment tool into my R script
Issue -
State: open - Opened by jhpoelen over 1 year ago
- 3 comments
#141 - add support for aligning with Mammal Diversity Database https://mammaldiversity.org
Issue -
State: closed - Opened by jhpoelen over 1 year ago
- 4 comments
#140 - unexpected crash on parsing "unparsable" name [ad64ad57 a281 e b398 dddc7e953]
Issue -
State: closed - Opened by jhpoelen over 1 year ago
#139 - revisit support for EOL's https://opendata.eol.org/dataset/identifier-map
Issue -
State: open - Opened by jhpoelen over 1 year ago
- 1 comment
#138 - TPT taxonomy - assume that when acceptedNameUsage is populated that the name is a synonym
Issue -
State: closed - Opened by jhpoelen over 1 year ago
- 3 comments
#137 - expose taxonomic hierarchy inference made by GBIF parser
Issue -
State: closed - Opened by jhpoelen over 1 year ago
- 7 comments
#136 - Unrecognized Hybrids in Taxonomy
Issue -
State: open - Opened by jtmiller28 over 1 year ago
#135 - New matcher to use Brazilian Flora 2020
Issue -
State: open - Opened by zedomel over 1 year ago
- 3 comments
#134 - Discoverlife subgenus names
Issue -
State: open - Opened by seltmann over 1 year ago
- 3 comments
Labels: Big-Bee
#133 - change name relations for Plazi from SAME_AS to OCCURS_IN
Issue -
State: closed - Opened by jhpoelen over 1 year ago
- 2 comments
#131 - nomer itis incorrectly claims that Mormoops blainvillei is a synonym of Mormoops blainvillii - according to itis, it is the other way around
Issue -
State: closed - Opened by jhpoelen over 1 year ago
- 5 comments
Labels: external issue
#130 - include authorship in ITIS/GBIF index
Issue -
State: closed - Opened by jhpoelen over 1 year ago
- 1 comment
#129 - nomer 0.4.3 IOException when try to use globi-taxon-rank
Issue -
State: closed - Opened by zedomel over 1 year ago
- 4 comments
Labels: bug, help wanted
#128 - Parsing Names in a Hierarchical Fashion
Issue -
State: open - Opened by jtmiller28 over 1 year ago
- 3 comments
#127 - unexpected duplicates when matching [Homo sapiens] against ott
Issue -
State: closed - Opened by jhpoelen over 1 year ago
- 6 comments
Labels: bug
#126 - plazi treatment indexer stops prematurely with java.lang.NoClassDefFoundError: org/apache/commons/codec/digest/MurmurHash3
Issue -
State: closed - Opened by jhpoelen over 1 year ago
- 3 comments
#125 - unexpected error on matching Homo sapiens against GloBI taxon graph
Issue -
State: closed - Opened by jhpoelen over 1 year ago
- 2 comments
#124 - inconsistent name alignment review for [Aglais io] using different versions of Catalogue of Life matcher
Issue -
State: closed - Opened by jhpoelen over 1 year ago
- 13 comments
Labels: external issue
#123 - when parsing names, consider Benichou L, Buschbom J, Campbell M, Hermann E, Kvacek J, Mergen P, Mitchell L, Rinaldo C, Agosti D (2022) Joint statement on best practices for the citation of authorities of scientific names in taxonomy by CETAF, SPNHC and BHL. Research Ideas and Outcomes 8: e94338.
Issue -
State: open - Opened by jhpoelen over 1 year ago
- 14 comments
Labels: discussion
#122 - OpenBiodiv returns http code 401 (unauthorized) when requesting query results
Issue -
State: open - Opened by jhpoelen over 1 year ago
- 9 comments
Labels: external issue
#121 - How to use nomer behind a proxy?
Issue -
State: open - Opened by zedomel over 1 year ago
- 7 comments
Labels: needs review
#120 - Including family as an output using properties
Issue -
State: closed - Opened by jtmiller28 over 1 year ago
- 5 comments
#119 - Toxicodendron oligophyllum is included in COL, but does not match [nomer append col]
Issue -
State: closed - Opened by jhpoelen over 1 year ago
- 4 comments
#118 - add support for Mammals Species of the World v3
Issue -
State: open - Opened by jhpoelen over 1 year ago
- 2 comments
#117 - suggest to support checklistbank
Issue -
State: open - Opened by jhpoelen over 1 year ago
- 3 comments
#116 - ,
Issue -
State: closed - Opened by BarbaraMeulenbelt over 1 year ago
#115 - suggest to support people name alignment re: The disambiguation of people names in biological collections
Issue -
State: open - Opened by jhpoelen over 1 year ago
- 2 comments
#114 - suggest to use RCC5 logic theory to communicate taxonomic alignments: https://cs.gonzaga.edu/faculty/bowers/papers/bowers-onisw-08.pdf
Issue -
State: open - Opened by jhpoelen over 1 year ago
- 37 comments
#113 - http://graph.openbiodiv.net/repositories/OpenBiodiv2020 does not appear to respond to queries
Issue -
State: closed - Opened by jhpoelen almost 2 years ago
- 1 comment
Labels: external issue
#112 - Suggest to include authorship past name parsing gn-parse, gbif-parse
Issue -
State: closed - Opened by jtmiller28 almost 2 years ago
- 7 comments
Labels: enhancement
#111 - currently default nomer cache dir is ./.nomer (working dir), suggest to use $HOME/.cache/nomer/ instead.
Issue -
State: closed - Opened by jhpoelen almost 2 years ago
- 1 comment
#110 - Multiple Author Retrieval
Issue -
State: closed - Opened by jtmiller28 almost 2 years ago
- 10 comments
Labels: workaround exists
#109 - extract name relations used in synospecies
Issue -
State: open - Opened by jhpoelen almost 2 years ago
Labels: enhancement
#108 - suggest to add support for mapping names to distribution maps
Issue -
State: open - Opened by jhpoelen almost 2 years ago
- 1 comment
Labels: enhancement
#107 - gn-parse makes designations into hybrids, tripping nomer to fail in resolution
Issue -
State: open - Opened by jtmiller28 almost 2 years ago
- 10 comments
Labels: discussion
#106 - Subspecies: designation as ssp. will trip alignment to NONE
Issue -
State: closed - Opened by jtmiller28 almost 2 years ago
- 1 comment
#105 - Support for misspellings in Nomer?
Issue -
State: open - Opened by jtmiller28 almost 2 years ago
- 7 comments
Labels: discussion
#104 - Inclusion of Authorship effect on name resolution?
Issue -
State: closed - Opened by jtmiller28 almost 2 years ago
- 11 comments
Labels: enhancement
#103 - wfo returning concerning warnings
Issue -
State: closed - Opened by jtmiller28 almost 2 years ago
- 7 comments
Labels: duplicate
#102 - suggest to turn https://www.wikidata.org/wiki/Property:P7715 (World of Flora Online) into an identifier for taxa
Issue -
State: closed - Opened by jhpoelen almost 2 years ago
- 3 comments
Labels: external issue
#101 - nomer crashes on [nomer ls wfo]
Issue -
State: closed - Opened by jhpoelen almost 2 years ago
- 2 comments
Labels: bug
#100 - accepting suggestions on how to handle "doubtful" name relations
Issue -
State: open - Opened by jhpoelen almost 2 years ago
- 33 comments
Labels: discussion
#99 - support matching against USDA Plants - USDA
Issue -
State: open - Opened by jhpoelen almost 2 years ago
Labels: enhancement
#98 - suggest to support matching against World Checklist of Vascular Plants - WCVP
Issue -
State: open - Opened by jhpoelen almost 2 years ago
Labels: enhancement
#97 - support to match names against https://ucjeps.berkeley.edu/eflora/
Issue -
State: closed - Opened by jhpoelen almost 2 years ago
- 3 comments
Labels: enhancement
#96 - add support for world of flora online
Issue -
State: closed - Opened by jhpoelen almost 2 years ago
- 5 comments
Labels: Big-Bee
#95 - add support for tropicos
Issue -
State: open - Opened by jhpoelen almost 2 years ago
Labels: enhancement
#94 - suggest to support matching names against IUCN
Issue -
State: open - Opened by jhpoelen almost 2 years ago
Labels: enhancement
#93 - suggest to use skos terms to express term relations
Issue -
State: open - Opened by jhpoelen almost 2 years ago
- 4 comments
Labels: enhancement
#92 - add support for https://avibase.bsc-eoc.org/species.jsp?avibaseid=BA247782
Issue -
State: open - Opened by jhpoelen almost 2 years ago
Labels: enhancement
#91 - add support for indexing and matching against batnames.org
Issue -
State: open - Opened by jhpoelen almost 2 years ago
- 3 comments
Labels: enhancement
#90 - I'd like to do a gap analysis of names in batbase, batnames, and handbook of the mammals of the world
Issue -
State: open - Opened by jhpoelen almost 2 years ago
- 2 comments
#89 - parsing timeout when using gbif-parse
Issue -
State: open - Opened by jhpoelen almost 2 years ago
- 9 comments
Labels: external issue
#88 - populate wikidata Apidae (a bee) family pages with their associated Plazi treatment
Issue -
State: open - Opened by jhpoelen about 2 years ago
- 1 comment
#87 - add spatial reasoning to nomer to help disambiguate meaning based on where a organism was found
Issue -
State: open - Opened by jhpoelen about 2 years ago
Labels: enhancement
#86 - Repackaged Taxonomic Backbone of Global Biodiversity Information Facility (GBIF)
Issue -
State: closed - Opened by zedomel about 2 years ago
- 6 comments
#85 - nomer needs a logo
Issue -
State: open - Opened by seltmann about 2 years ago
- 1 comment
Labels: enhancement
#84 - How can I use nomer to translate verbatim names to normalized names?
Issue -
State: closed - Opened by zedomel about 2 years ago
- 2 comments
#83 - demonstrate progression of changes for Hipposideros caffer
Issue -
State: open - Opened by jhpoelen about 2 years ago
- 4 comments
#82 - support GADM locality name matching
Issue -
State: open - Opened by jhpoelen about 2 years ago
Labels: enhancement
#81 - add copy-paste example in the man pages
Issue -
State: open - Opened by jhpoelen about 2 years ago
#80 - add discover life to nomer corpus of taxonomic resources
Issue -
State: open - Opened by jhpoelen about 2 years ago
- 1 comment
Labels: enhancement
#79 - option --include-header no longer available in 0.2.12
Issue -
State: closed - Opened by jhpoelen about 2 years ago
- 1 comment
#78 - Implementation of fuzzy name match
Issue -
State: open - Opened by zedomel over 2 years ago
- 9 comments
Labels: enhancement
#77 - Catalogue of Life synonym relation direction appears reversed
Issue -
State: closed - Opened by jhpoelen over 2 years ago
- 1 comment
#76 - suggest to change name relation "NONE" to "NOT_FOUND"
Issue -
State: open - Opened by jhpoelen over 2 years ago
#75 - Add citation for EOL Dynamic Hierarchy
Issue -
State: open - Opened by KatjaSchulz over 2 years ago
- 3 comments
#74 - populate wikidata entry for Myotis nimbaensis Simmons & Flanders & Fils & Parker & Jamison D. Suter & Bamba & Douno & Mamady Kobele Keita & Morales & Frick 2021, new species urn:catalog:AMNH:Mammals:M-279589
Issue -
State: open - Opened by jhpoelen over 2 years ago
- 5 comments
#73 - use (dwca) checklist as nomer matcher
Issue -
State: open - Opened by jhpoelen over 2 years ago
- 5 comments
Labels: enhancement
#72 - Duplicate rows as seen by https://github.com/GlobalNamesArchitecture/dwca_hunter/issues/53
Issue -
State: closed - Opened by seltmann over 2 years ago
- 3 comments
Labels: needs review, Big-Bee
#71 - No result in IndexFungorum using wikidata-web
Issue -
State: closed - Opened by nleguillarme over 2 years ago
- 4 comments