Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / glencoesoftware/omero-ms-image-region issues and pull requests
#140 - Use release versions of omero-ms-core and omero-zarr-pixel-buffer
Pull Request -
State: open - Opened by sbesson 6 months ago
#139 - Fix memo file regeneration
Pull Request -
State: closed - Opened by sbesson 6 months ago
#138 - Switch to GitHub workflows
Pull Request -
State: closed - Opened by sbesson 7 months ago
#137 - Zarr pixel buffer performance improvements
Pull Request -
State: closed - Opened by sbesson 7 months ago
#136 - Bump omero-blitz to 5.7.2 and logback to 1.3.x
Pull Request -
State: closed - Opened by sbesson 8 months ago
- 2 comments
#135 - Fix support for NGFF URI with encoded/quoted characters
Pull Request -
State: closed - Opened by sbesson 9 months ago
- 2 comments
#134 - Histogram request: also return 404 on invalid channel index
Pull Request -
State: closed - Opened by sbesson 11 months ago
#133 - Set Status Code Before Writing
Pull Request -
State: closed - Opened by kkoz 12 months ago
- 3 comments
#132 - First pass at fixing imgData endpoint for multi-dataset images
Pull Request -
State: closed - Opened by kkoz about 1 year ago
#131 - Bump aws-java-sdk-s3 library to the latest release on the 1.11.x branch
Pull Request -
State: closed - Opened by sbesson about 1 year ago
- 1 comment
#130 - Bump omero-ms-core to 0.7.0
Pull Request -
State: closed - Opened by sbesson over 1 year ago
#129 - Label Image Metadata API call returns status code 200 on failure
Issue -
State: closed - Opened by knabar over 1 year ago
- 2 comments
#128 - Histogram endpoint: fix bin assignment for non integer and add tests for all supported pixel types
Pull Request -
State: closed - Opened by sbesson over 1 year ago
- 1 comment
#127 - Histogram endpoint: review error responses in invalid scenarios
Issue -
State: closed - Opened by sbesson over 1 year ago
#126 - Explicitly name the CSV as image-list-${DATESTR}.csv
Pull Request -
State: closed - Opened by sbesson over 1 year ago
#125 - Add Histogram JSON Endpoint
Pull Request -
State: closed - Opened by kkoz over 1 year ago
- 4 comments
#124 - Review micro-service systemd service file
Pull Request -
State: closed - Opened by sbesson over 1 year ago
#123 - Configuration files review
Pull Request -
State: closed - Opened by sbesson over 1 year ago
#122 - Handle missing/malformed query params
Pull Request -
State: closed - Opened by kkoz over 1 year ago
#121 - Fix default maximum number of active channels
Pull Request -
State: closed - Opened by sbesson over 1 year ago
#120 - Support missing codomain maps
Pull Request -
State: closed - Opened by kkoz over 1 year ago
- 2 comments
#119 - Consider missing channels in URL to be inactive
Pull Request -
State: closed - Opened by kkoz over 1 year ago
#118 - Throw on Disabled AWS Credential Types
Pull Request -
State: closed - Opened by kkoz almost 2 years ago
#117 - Add EC2 Instance Profile Credentials
Pull Request -
State: closed - Opened by kkoz almost 2 years ago
- 1 comment
#116 - Set omero.pixeldata.ome_ngff_enabled to true by default
Pull Request -
State: closed - Opened by sbesson almost 2 years ago
- 2 comments
#115 - Deleted
Pull Request -
State: closed - Opened by kkoz almost 2 years ago
#114 - Include Zarr Pixel Buffer
Issue -
State: closed - Opened by kkoz almost 2 years ago
- 3 comments
#113 - NGFF label: relax UUID requirement
Pull Request -
State: closed - Opened by sbesson almost 2 years ago
- 2 comments
#112 - Switch to OME-NGFF Gen 3 URIs (See #111)
Pull Request -
State: closed - Opened by chris-allan almost 2 years ago
- 1 comment
#111 - Add logic to handle `Mask.details.ExternalInfo.lsid`
Issue -
State: closed - Opened by chris-allan almost 2 years ago
- 1 comment
#110 - Change tile size checks to use plane size
Pull Request -
State: closed - Opened by kkoz about 2 years ago
#109 - Add CLI classes
Pull Request -
State: open - Opened by kkoz about 2 years ago
#108 - Remove unused omero client from getRegion and render
Pull Request -
State: closed - Opened by kkoz about 2 years ago
#107 - Upgrade to omero-blitz 5.5.12 (OMERO.server 5.6.5)
Pull Request -
State: closed - Opened by chris-allan about 2 years ago
#106 - Configs need to be strings
Pull Request -
State: closed - Opened by kkoz about 2 years ago
#105 - Flipping Broken for non-0 resolution levels
Issue -
State: open - Opened by kkoz about 2 years ago
#104 - Get size from PixelBuffer instead of Pixels so it respects resolution…
Pull Request -
State: closed - Opened by kkoz about 2 years ago
- 1 comment
#103 - Add statsInfoMissing to image data endpoint
Pull Request -
State: open - Opened by kkoz about 2 years ago
#102 - Synchronize with work on omero-zarr-pixel-buffer
Pull Request -
State: closed - Opened by chris-allan over 2 years ago
#101 - Use short lived IceMapper
Pull Request -
State: closed - Opened by chris-allan over 2 years ago
#100 - Use short lived IceMapper
Pull Request -
State: closed - Opened by chris-allan over 2 years ago
#99 - Fix imgData missing pixel sizes
Pull Request -
State: closed - Opened by chris-allan over 2 years ago
- 2 comments
#98 - Load wells and well samples for masks for plate label images
Pull Request -
State: closed - Opened by kkoz over 2 years ago
#97 - Fix lookup table handling
Pull Request -
State: closed - Opened by chris-allan over 2 years ago
#96 - Use image size at given resolution level rather than full res
Pull Request -
State: closed - Opened by kkoz almost 3 years ago
- 2 comments
#95 - Fix lookup table handling
Pull Request -
State: closed - Opened by chris-allan almost 3 years ago
#94 - Thorough Zarr pixel buffer implementation
Pull Request -
State: closed - Opened by chris-allan almost 3 years ago
- 4 comments
#93 - Use length of bytes for img data content length
Pull Request -
State: closed - Opened by kkoz almost 3 years ago
- 1 comment
#92 - Add imgdata endpoint
Pull Request -
State: closed - Opened by kkoz about 3 years ago
- 2 comments
#91 - Proactively handle missing and dangling managed repository symlinks
Pull Request -
State: closed - Opened by chris-allan about 3 years ago
- 1 comment
#90 - Add documentation to config and README about NGFF and S3 configuration
Pull Request -
State: closed - Opened by kkoz about 3 years ago
- 2 comments
#89 - Add "quantization" to features in OPTIONS
Pull Request -
State: closed - Opened by kkoz about 3 years ago
- 1 comment
#88 - Add "quantization" to features in OPTIONS
Pull Request -
State: closed - Opened by kkoz about 3 years ago
- 3 comments
#87 - Move updateSettings to ImageRegionCtx and add tests
Pull Request -
State: closed - Opened by kkoz over 3 years ago
#86 - Use pixels ID to lookup rendering def
Pull Request -
State: closed - Opened by kkoz over 3 years ago
#85 - Truncate region when requesting shape mask bytes
Pull Request -
State: closed - Opened by kkoz over 3 years ago
#84 - fix bounds checking in ZarrPixelBuffer
Pull Request -
State: closed - Opened by kkoz over 3 years ago
#83 - First set of NGFF optimizations
Pull Request -
State: closed - Opened by chris-allan over 3 years ago
- 2 comments
#82 - Bulk metadata queries
Pull Request -
State: closed - Opened by chris-allan over 3 years ago
#81 - Fix quantization bugs and tests
Pull Request -
State: closed - Opened by kkoz over 3 years ago
- 2 comments
#80 - Fix Plate based OME-NGFF data
Pull Request -
State: closed - Opened by chris-allan over 3 years ago
- 1 comment
#79 - Zarr tests
Pull Request -
State: closed - Opened by kkoz over 3 years ago
- 4 comments
#78 - Fix directory file handle leak
Pull Request -
State: closed - Opened by chris-allan over 3 years ago
#77 - Remove utility classes, push functionality down, refactor S3 support
Pull Request -
State: closed - Opened by kkoz over 3 years ago
- 1 comment
#76 - Add functionality to read ImageRegionCtx params from the request body…
Pull Request -
State: open - Opened by kkoz over 3 years ago
- 1 comment
#75 - Dockerfile
Pull Request -
State: closed - Opened by joshmoore over 3 years ago
- 3 comments
#74 - Remove byte swapping
Pull Request -
State: closed - Opened by kkoz over 3 years ago
#73 - Increase default max active channels to 10
Pull Request -
State: closed - Opened by kkoz over 3 years ago
#72 - Fix channel disabling bug
Pull Request -
State: closed - Opened by kkoz over 3 years ago
#71 - Use gs-jzarr
Pull Request -
State: closed - Opened by kkoz over 3 years ago
#70 - Add quantization and inverted map parameter handling
Pull Request -
State: closed - Opened by kkoz over 3 years ago
- 1 comment
#69 - Quantization support
Pull Request -
State: closed - Opened by kkoz over 3 years ago
- 4 comments
#68 - Ngff fixes
Pull Request -
State: closed - Opened by kkoz over 3 years ago
#67 - Logging and config changes
Pull Request -
State: closed - Opened by stick over 3 years ago
- 1 comment
#66 - Bump ms-core to version 0.5.2
Pull Request -
State: closed - Opened by kkoz almost 4 years ago
#65 - Add logic to ShapeMask to get label images if they exist
Pull Request -
State: closed - Opened by kkoz about 4 years ago
- 1 comment
#64 - Handle unexpected failure codes
Pull Request -
State: closed - Opened by chris-allan over 4 years ago
#63 - fix math oversight in counting total processed files
Pull Request -
State: closed - Opened by stick over 4 years ago
#62 - Memoizer script fixes
Pull Request -
State: closed - Opened by stick over 4 years ago
#61 - joda-time is required
Pull Request -
State: closed - Opened by kkoz over 4 years ago
#60 - Cleanup and updates for new memoizer control script
Pull Request -
State: closed - Opened by stick over 4 years ago
- 1 comment
#59 - Memoizer
Pull Request -
State: closed - Opened by stick over 4 years ago
#58 - Memo stdout changes
Pull Request -
State: closed - Opened by kkoz over 4 years ago
#57 - Remove vertx from memo regenerator and add stdout logging
Pull Request -
State: closed - Opened by kkoz over 4 years ago
#56 - First pass at vertx metrics
Pull Request -
State: closed - Opened by kkoz over 4 years ago
- 1 comment
#55 - Reduce logging during processing and add error summary file
Pull Request -
State: closed - Opened by kkoz over 4 years ago
- 3 comments
#54 - Make max channels configurable
Pull Request -
State: closed - Opened by kkoz over 4 years ago
#53 - Keep track of total number of errors and log at end of memo regeneration
Pull Request -
State: closed - Opened by kkoz over 4 years ago
#52 - Add version to memoregenerator
Pull Request -
State: closed - Opened by kkoz over 4 years ago
- 1 comment
#51 - Display a meaningful version
Pull Request -
State: closed - Opened by chris-allan over 4 years ago
#50 - Too many threads created during rendering
Issue -
State: open - Opened by kkoz over 4 years ago
- 1 comment
#49 - Small changes to memo regeneration
Pull Request -
State: closed - Opened by kkoz over 4 years ago
- 1 comment
#48 - Change how tracing is disabled
Pull Request -
State: open - Opened by kkoz almost 5 years ago
#47 - Add MemoRegenerator class
Pull Request -
State: closed - Opened by kkoz almost 5 years ago
#46 - Apply tracing changes
Pull Request -
State: open - Opened by kkoz almost 5 years ago
#45 - Release 0.4.6
Pull Request -
State: closed - Opened by kkoz almost 5 years ago
#44 - Add default jmx metrics
Pull Request -
State: closed - Opened by kkoz almost 5 years ago
#43 - Add jmx metrics
Pull Request -
State: closed - Opened by kkoz almost 5 years ago
#38 - Docker build
Pull Request -
State: closed - Opened by stick about 5 years ago
- 2 comments
#18 - Additional configurable caches and prometheus metrics
Pull Request -
State: open - Opened by chris-allan about 6 years ago