Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / glencoesoftware/omero-ms-image-region issues and pull requests

#139 - Fix memo file regeneration

Pull Request - State: closed - Opened by sbesson 6 months ago

#138 - Switch to GitHub workflows

Pull Request - State: closed - Opened by sbesson 7 months ago

#137 - Zarr pixel buffer performance improvements

Pull Request - State: closed - Opened by sbesson 7 months ago

#136 - Bump omero-blitz to 5.7.2 and logback to 1.3.x

Pull Request - State: closed - Opened by sbesson 8 months ago - 2 comments

#135 - Fix support for NGFF URI with encoded/quoted characters

Pull Request - State: closed - Opened by sbesson 9 months ago - 2 comments

#134 - Histogram request: also return 404 on invalid channel index

Pull Request - State: closed - Opened by sbesson 11 months ago

#133 - Set Status Code Before Writing

Pull Request - State: closed - Opened by kkoz 12 months ago - 3 comments

#132 - First pass at fixing imgData endpoint for multi-dataset images

Pull Request - State: closed - Opened by kkoz about 1 year ago

#131 - Bump aws-java-sdk-s3 library to the latest release on the 1.11.x branch

Pull Request - State: closed - Opened by sbesson about 1 year ago - 1 comment

#130 - Bump omero-ms-core to 0.7.0

Pull Request - State: closed - Opened by sbesson over 1 year ago

#129 - Label Image Metadata API call returns status code 200 on failure

Issue - State: closed - Opened by knabar over 1 year ago - 2 comments

#126 - Explicitly name the CSV as image-list-${DATESTR}.csv

Pull Request - State: closed - Opened by sbesson over 1 year ago

#125 - Add Histogram JSON Endpoint

Pull Request - State: closed - Opened by kkoz over 1 year ago - 4 comments

#124 - Review micro-service systemd service file

Pull Request - State: closed - Opened by sbesson over 1 year ago

#123 - Configuration files review

Pull Request - State: closed - Opened by sbesson over 1 year ago

#122 - Handle missing/malformed query params

Pull Request - State: closed - Opened by kkoz over 1 year ago

#121 - Fix default maximum number of active channels

Pull Request - State: closed - Opened by sbesson over 1 year ago

#120 - Support missing codomain maps

Pull Request - State: closed - Opened by kkoz over 1 year ago - 2 comments

#119 - Consider missing channels in URL to be inactive

Pull Request - State: closed - Opened by kkoz over 1 year ago

#118 - Throw on Disabled AWS Credential Types

Pull Request - State: closed - Opened by kkoz almost 2 years ago

#117 - Add EC2 Instance Profile Credentials

Pull Request - State: closed - Opened by kkoz almost 2 years ago - 1 comment

#116 - Set omero.pixeldata.ome_ngff_enabled to true by default

Pull Request - State: closed - Opened by sbesson almost 2 years ago - 2 comments

#115 - Deleted

Pull Request - State: closed - Opened by kkoz almost 2 years ago

#114 - Include Zarr Pixel Buffer

Issue - State: closed - Opened by kkoz almost 2 years ago - 3 comments

#113 - NGFF label: relax UUID requirement

Pull Request - State: closed - Opened by sbesson almost 2 years ago - 2 comments

#112 - Switch to OME-NGFF Gen 3 URIs (See #111)

Pull Request - State: closed - Opened by chris-allan almost 2 years ago - 1 comment

#111 - Add logic to handle `Mask.details.ExternalInfo.lsid`

Issue - State: closed - Opened by chris-allan almost 2 years ago - 1 comment

#110 - Change tile size checks to use plane size

Pull Request - State: closed - Opened by kkoz about 2 years ago

#109 - Add CLI classes

Pull Request - State: open - Opened by kkoz about 2 years ago

#108 - Remove unused omero client from getRegion and render

Pull Request - State: closed - Opened by kkoz about 2 years ago

#107 - Upgrade to omero-blitz 5.5.12 (OMERO.server 5.6.5)

Pull Request - State: closed - Opened by chris-allan about 2 years ago

#106 - Configs need to be strings

Pull Request - State: closed - Opened by kkoz about 2 years ago

#105 - Flipping Broken for non-0 resolution levels

Issue - State: open - Opened by kkoz about 2 years ago

#104 - Get size from PixelBuffer instead of Pixels so it respects resolution…

Pull Request - State: closed - Opened by kkoz about 2 years ago - 1 comment

#103 - Add statsInfoMissing to image data endpoint

Pull Request - State: open - Opened by kkoz about 2 years ago

#102 - Synchronize with work on omero-zarr-pixel-buffer

Pull Request - State: closed - Opened by chris-allan over 2 years ago

#101 - Use short lived IceMapper

Pull Request - State: closed - Opened by chris-allan over 2 years ago

#100 - Use short lived IceMapper

Pull Request - State: closed - Opened by chris-allan over 2 years ago

#99 - Fix imgData missing pixel sizes

Pull Request - State: closed - Opened by chris-allan over 2 years ago - 2 comments

#98 - Load wells and well samples for masks for plate label images

Pull Request - State: closed - Opened by kkoz over 2 years ago

#97 - Fix lookup table handling

Pull Request - State: closed - Opened by chris-allan over 2 years ago

#96 - Use image size at given resolution level rather than full res

Pull Request - State: closed - Opened by kkoz almost 3 years ago - 2 comments

#95 - Fix lookup table handling

Pull Request - State: closed - Opened by chris-allan almost 3 years ago

#94 - Thorough Zarr pixel buffer implementation

Pull Request - State: closed - Opened by chris-allan almost 3 years ago - 4 comments

#93 - Use length of bytes for img data content length

Pull Request - State: closed - Opened by kkoz almost 3 years ago - 1 comment

#92 - Add imgdata endpoint

Pull Request - State: closed - Opened by kkoz about 3 years ago - 2 comments

#91 - Proactively handle missing and dangling managed repository symlinks

Pull Request - State: closed - Opened by chris-allan about 3 years ago - 1 comment

#90 - Add documentation to config and README about NGFF and S3 configuration

Pull Request - State: closed - Opened by kkoz about 3 years ago - 2 comments

#89 - Add "quantization" to features in OPTIONS

Pull Request - State: closed - Opened by kkoz about 3 years ago - 1 comment

#88 - Add "quantization" to features in OPTIONS

Pull Request - State: closed - Opened by kkoz about 3 years ago - 3 comments

#87 - Move updateSettings to ImageRegionCtx and add tests

Pull Request - State: closed - Opened by kkoz over 3 years ago

#86 - Use pixels ID to lookup rendering def

Pull Request - State: closed - Opened by kkoz over 3 years ago

#85 - Truncate region when requesting shape mask bytes

Pull Request - State: closed - Opened by kkoz over 3 years ago

#84 - fix bounds checking in ZarrPixelBuffer

Pull Request - State: closed - Opened by kkoz over 3 years ago

#83 - First set of NGFF optimizations

Pull Request - State: closed - Opened by chris-allan over 3 years ago - 2 comments

#82 - Bulk metadata queries

Pull Request - State: closed - Opened by chris-allan over 3 years ago

#81 - Fix quantization bugs and tests

Pull Request - State: closed - Opened by kkoz over 3 years ago - 2 comments

#80 - Fix Plate based OME-NGFF data

Pull Request - State: closed - Opened by chris-allan over 3 years ago - 1 comment

#79 - Zarr tests

Pull Request - State: closed - Opened by kkoz over 3 years ago - 4 comments

#78 - Fix directory file handle leak

Pull Request - State: closed - Opened by chris-allan over 3 years ago

#77 - Remove utility classes, push functionality down, refactor S3 support

Pull Request - State: closed - Opened by kkoz over 3 years ago - 1 comment

#76 - Add functionality to read ImageRegionCtx params from the request body…

Pull Request - State: open - Opened by kkoz over 3 years ago - 1 comment

#75 - Dockerfile

Pull Request - State: closed - Opened by joshmoore over 3 years ago - 3 comments

#74 - Remove byte swapping

Pull Request - State: closed - Opened by kkoz over 3 years ago

#73 - Increase default max active channels to 10

Pull Request - State: closed - Opened by kkoz over 3 years ago

#72 - Fix channel disabling bug

Pull Request - State: closed - Opened by kkoz over 3 years ago

#71 - Use gs-jzarr

Pull Request - State: closed - Opened by kkoz over 3 years ago

#70 - Add quantization and inverted map parameter handling

Pull Request - State: closed - Opened by kkoz over 3 years ago - 1 comment

#69 - Quantization support

Pull Request - State: closed - Opened by kkoz over 3 years ago - 4 comments

#68 - Ngff fixes

Pull Request - State: closed - Opened by kkoz over 3 years ago

#67 - Logging and config changes

Pull Request - State: closed - Opened by stick over 3 years ago - 1 comment

#66 - Bump ms-core to version 0.5.2

Pull Request - State: closed - Opened by kkoz almost 4 years ago

#65 - Add logic to ShapeMask to get label images if they exist

Pull Request - State: closed - Opened by kkoz about 4 years ago - 1 comment

#64 - Handle unexpected failure codes

Pull Request - State: closed - Opened by chris-allan over 4 years ago

#63 - fix math oversight in counting total processed files

Pull Request - State: closed - Opened by stick over 4 years ago

#62 - Memoizer script fixes

Pull Request - State: closed - Opened by stick over 4 years ago

#61 - joda-time is required

Pull Request - State: closed - Opened by kkoz over 4 years ago

#60 - Cleanup and updates for new memoizer control script

Pull Request - State: closed - Opened by stick over 4 years ago - 1 comment

#59 - Memoizer

Pull Request - State: closed - Opened by stick over 4 years ago

#58 - Memo stdout changes

Pull Request - State: closed - Opened by kkoz over 4 years ago

#57 - Remove vertx from memo regenerator and add stdout logging

Pull Request - State: closed - Opened by kkoz over 4 years ago

#56 - First pass at vertx metrics

Pull Request - State: closed - Opened by kkoz over 4 years ago - 1 comment

#55 - Reduce logging during processing and add error summary file

Pull Request - State: closed - Opened by kkoz over 4 years ago - 3 comments

#54 - Make max channels configurable

Pull Request - State: closed - Opened by kkoz over 4 years ago

#53 - Keep track of total number of errors and log at end of memo regeneration

Pull Request - State: closed - Opened by kkoz over 4 years ago

#52 - Add version to memoregenerator

Pull Request - State: closed - Opened by kkoz over 4 years ago - 1 comment

#51 - Display a meaningful version

Pull Request - State: closed - Opened by chris-allan over 4 years ago

#50 - Too many threads created during rendering

Issue - State: open - Opened by kkoz over 4 years ago - 1 comment

#49 - Small changes to memo regeneration

Pull Request - State: closed - Opened by kkoz over 4 years ago - 1 comment

#48 - Change how tracing is disabled

Pull Request - State: open - Opened by kkoz almost 5 years ago

#47 - Add MemoRegenerator class

Pull Request - State: closed - Opened by kkoz almost 5 years ago

#46 - Apply tracing changes

Pull Request - State: open - Opened by kkoz almost 5 years ago

#45 - Release 0.4.6

Pull Request - State: closed - Opened by kkoz almost 5 years ago

#44 - Add default jmx metrics

Pull Request - State: closed - Opened by kkoz almost 5 years ago

#43 - Add jmx metrics

Pull Request - State: closed - Opened by kkoz almost 5 years ago

#38 - Docker build

Pull Request - State: closed - Opened by stick about 5 years ago - 2 comments

#18 - Additional configurable caches and prometheus metrics

Pull Request - State: open - Opened by chris-allan about 6 years ago