Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / glasgowcompbio/vimms issues and pull requests
#275 - How to use IAPI
Issue -
State: closed - Opened by pisistrato 8 months ago
- 2 comments
#274 - Retrieve mass-spec-utils Code
Issue -
State: open - Opened by mcbrider5002 9 months ago
#273 - Refactor Scan Sampler to Use Previous Scan Level
Issue -
State: open - Opened by mcbrider5002 9 months ago
#272 - IndexError: boolean index did not match indexed array along dimension 0
Issue -
State: closed - Opened by oolonek about 1 year ago
- 5 comments
#271 - Evaluation code throws NaN when computing intensity proportion
Issue -
State: closed - Opened by joewandy about 1 year ago
- 2 comments
Labels: bug
#270 - Bump cryptography from 3.4.8 to 41.0.2
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 1 comment
Labels: dependencies
#269 - Initial ms1 scan of 1 peak
Issue -
State: open - Opened by joewandy over 1 year ago
- 1 comment
Labels: discussion
#268 - Charge state filtering for proteomics
Issue -
State: closed - Opened by joewandy over 1 year ago
- 1 comment
Labels: enhancement
#267 - Add poetry support
Issue -
State: closed - Opened by joewandy over 1 year ago
- 1 comment
Labels: enhancement
#266 - Noise peaks will never be fragmented
Issue -
State: open - Opened by joewandy over 1 year ago
Labels: discussion
#265 - Scan timing bug
Issue -
State: closed - Opened by joewandy over 1 year ago
- 4 comments
Labels: bug
#264 - Bump cryptography from 3.4.8 to 41.0.0
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 1 comment
Labels: dependencies
#263 - Bump requests from 2.26.0 to 2.31.0
Pull Request -
State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies
#262 - Bump tornado from 6.1 to 6.3.2
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 1 comment
Labels: dependencies
#261 - Project documentation fails to build
Issue -
State: closed - Opened by joewandy over 1 year ago
- 1 comment
Labels: bug
#260 - Bump pymdown-extensions from 8.2 to 10.0
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 1 comment
Labels: dependencies
#259 - TypeError: unsupported operand type(s) for *: 'float' and 'NoneType'
Issue -
State: closed - Opened by joewandy over 1 year ago
- 5 comments
Labels: bug
#258 - IndexError in mass spec
Issue -
State: closed - Opened by joewandy over 1 year ago
- 2 comments
Labels: bug
#257 - No Targeting Below 80 m/z
Issue -
State: open - Opened by mcbrider5002 over 1 year ago
- 2 comments
Labels: bug
#256 - Bump ipython from 7.27.0 to 8.10.0
Pull Request -
State: closed - Opened by dependabot[bot] almost 2 years ago
- 1 comment
Labels: dependencies
#255 - Bump cryptography from 3.4.8 to 39.0.1
Pull Request -
State: closed - Opened by dependabot[bot] almost 2 years ago
- 1 comment
Labels: dependencies
#254 - Unit test works locally but not on github action
Issue -
State: closed - Opened by joewandy almost 2 years ago
- 1 comment
Labels: bug
#253 - Re-implement old features
Issue -
State: open - Opened by joewandy almost 2 years ago
Labels: enhancement
#252 - Bump jupyter-core from 4.8.1 to 4.11.2
Pull Request -
State: closed - Opened by dependabot[bot] almost 2 years ago
- 1 comment
Labels: dependencies
#251 - Bump certifi from 2021.5.30 to 2022.12.7
Pull Request -
State: closed - Opened by dependabot[bot] almost 2 years ago
- 1 comment
Labels: dependencies
#250 - Bump pillow from 8.3.2 to 9.3.0
Pull Request -
State: closed - Opened by dependabot[bot] almost 2 years ago
- 1 comment
Labels: dependencies
#249 - Bump joblib from 1.0.1 to 1.2.0
Pull Request -
State: closed - Opened by dependabot[bot] about 2 years ago
- 1 comment
Labels: dependencies
#248 - Bump nbconvert from 6.1.0 to 6.5.1
Pull Request -
State: closed - Opened by dependabot[bot] about 2 years ago
- 1 comment
Labels: dependencies
#247 - Bump nbconvert from 6.1.0 to 6.3.0
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 1 comment
Labels: dependencies
#246 - Bump mistune from 0.8.4 to 2.0.3
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 1 comment
Labels: dependencies
#245 - Renumber the demos
Issue -
State: closed - Opened by vinnydavies over 2 years ago
#244 - TopN Simulator writing improperly to .mzML file
Issue -
State: closed - Opened by samsonjm over 2 years ago
- 2 comments
Labels: bug
#243 - Bump lxml from 4.6.3 to 4.9.1
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 1 comment
Labels: dependencies
#242 - Bump numpy from 1.21.2 to 1.22.0
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 1 comment
Labels: dependencies
#241 - Bump notebook from 6.4.4 to 6.4.12
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 1 comment
Labels: dependencies
#240 - Processing Times Have Extreme Outliers
Issue -
State: closed - Opened by mcbrider5002 over 2 years ago
- 3 comments
Labels: question
#239 - Bump notebook from 6.4.4 to 6.4.10
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 1 comment
Labels: dependencies
#238 - Isolating multiple chemicals produces only one fragevent in the scan
Issue -
State: closed - Opened by joewandy over 2 years ago
Labels: bug
#237 - Bump jupyter-server from 1.11.0 to 1.15.4
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 1 comment
Labels: dependencies
#236 - Bump pillow from 8.3.2 to 9.0.1
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 1 comment
Labels: dependencies
#235 - JOSS Review TODO
Issue -
State: closed - Opened by mcbrider5002 almost 3 years ago
#234 - [WIP] JOSS Review (@MKoesters)
Issue -
State: closed - Opened by MKoesters almost 3 years ago
- 2 comments
#233 - Bump ipython from 7.27.0 to 7.31.1
Pull Request -
State: closed - Opened by dependabot[bot] almost 3 years ago
- 1 comment
Labels: dependencies
#232 - Duplicate ROI creation codes
Issue -
State: closed - Opened by joewandy almost 3 years ago
Labels: refactoring
#231 - Bump pillow from 8.3.2 to 9.0.0
Pull Request -
State: closed - Opened by dependabot[bot] almost 3 years ago
- 1 comment
Labels: dependencies
#230 - JOSS Review (jspaezp)
Issue -
State: closed - Opened by jspaezp almost 3 years ago
- 1 comment
#229 - Bump lxml from 4.6.3 to 4.6.5
Pull Request -
State: closed - Opened by dependabot[bot] almost 3 years ago
- 1 comment
Labels: dependencies
#228 - defaultInstrumentConfigurationRef attribute not included in mzML output
Issue -
State: closed - Opened by RonanDaly almost 3 years ago
- 1 comment
#227 - simons joss edits
Pull Request -
State: closed - Opened by sdrogers about 3 years ago
#226 - Invalid exclusion weights
Issue -
State: closed - Opened by joewandy about 3 years ago
- 1 comment
Labels: bug
#225 - FixedScanController bug
Issue -
State: closed - Opened by joewandy about 3 years ago
- 1 comment
Labels: bug
#224 - Update notebooks
Issue -
State: closed - Opened by joewandy about 3 years ago
Labels: bug
#223 - Unable to use 64-bit packages
Issue -
State: closed - Opened by joewandy over 3 years ago
- 1 comment
Labels: discussion
#222 - File handler not closed correctly when writing mzML file
Issue -
State: open - Opened by joewandy over 3 years ago
Labels: bug
#221 - Unit test is failing
Issue -
State: closed - Opened by joewandy over 3 years ago
- 2 comments
Labels: bug
#220 - ROI controller codes
Issue -
State: closed - Opened by joewandy over 3 years ago
Labels: enhancement
#219 - ChemicalCreator produces random results in unit tests
Issue -
State: closed - Opened by joewandy over 3 years ago
Labels: bug
#218 - Single unit test results are different from running all unit tests
Issue -
State: closed - Opened by joewandy over 3 years ago
- 1 comment
Labels: bug
#217 - Generic exclusion codes
Issue -
State: closed - Opened by joewandy over 3 years ago
- 2 comments
Labels: enhancement
#216 - Tests for multi sample box controller
Issue -
State: closed - Opened by vinnydavies over 3 years ago
- 1 comment
Labels: enhancement
#215 - Tests for Non Overlap Controllers
Issue -
State: closed - Opened by vinnydavies over 3 years ago
Labels: enhancement
#214 - Bump py from 1.9.0 to 1.10.0
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies
#213 - Write documentation
Issue -
State: closed - Opened by joewandy over 3 years ago
- 1 comment
Labels: documentation
#212 - Simulator speed-up
Issue -
State: closed - Opened by joewandy over 3 years ago
- 1 comment
Labels: enhancement
#211 - Bump lxml from 4.5.2 to 4.6.3
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 1 comment
Labels: dependencies
#210 - Bump pygments from 2.7.1 to 2.7.4
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 1 comment
Labels: dependencies
#209 - Bump jinja2 from 2.11.2 to 2.11.3
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 1 comment
Labels: dependencies
#208 - Bump pillow from 7.2.0 to 8.1.1
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 1 comment
Labels: dependencies
#207 - Intensity at fragmentation [analysis code]
Issue -
State: closed - Opened by sdrogers over 3 years ago
- 3 comments
#206 - Bump bleach from 3.2.1 to 3.3.0
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
- 1 comment
Labels: dependencies
#205 - Boxcontroller
Pull Request -
State: closed - Opened by vinnydavies almost 4 years ago
#204 - Make WeightedDEW controller faster
Issue -
State: closed - Opened by joewandy almost 4 years ago
- 5 comments
Labels: enhancement
#203 - Bump lxml from 4.5.2 to 4.6.2
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
- 1 comment
Labels: dependencies
#202 - Breaking Overlap Controllers with RT Drift, then Correcting
Issue -
State: open - Opened by mcbrider5002 almost 4 years ago
- 6 comments
Labels: question
#201 - Improve thread-safety
Issue -
State: closed - Opened by joewandy almost 4 years ago
- 2 comments
Labels: question
#200 - Added a task manager to manage the number of custom scans being sent
Pull Request -
State: closed - Opened by joewandy almost 4 years ago
#199 - Can't send custom scans with Tune 3.3
Issue -
State: closed - Opened by joewandy almost 4 years ago
- 2 comments
Labels: bug
#198 - Loggin update
Pull Request -
State: closed - Opened by vinnydavies almost 4 years ago
#197 - Bump notebook from 6.1.4 to 6.1.5
Pull Request -
State: closed - Opened by dependabot[bot] about 4 years ago
Labels: dependencies
#196 - Iss 195
Pull Request -
State: closed - Opened by joewandy about 4 years ago
- 1 comment
Labels: enhancement
#195 - Create a script to run in-silico simulation from a seed file
Issue -
State: closed - Opened by joewandy about 4 years ago
- 1 comment
Labels: enhancement
#194 - Duplicate MZMine Runner Code
Issue -
State: closed - Opened by mcbrider5002 about 4 years ago
- 2 comments
Labels: refactoring
#193 - Adduct and isotope prior of KnownChemicals
Issue -
State: closed - Opened by joewandy about 4 years ago
- 2 comments
Labels: bug
#192 - Cutoff parameterisation in Gaussian Chromatogram
Issue -
State: open - Opened by sdrogers about 4 years ago
- 2 comments
Labels: enhancement, question
#191 - Automate MS-DIAL
Issue -
State: closed - Opened by joewandy about 4 years ago
- 10 comments
Labels: bug
#190 - Make formula string and RT to be the key in eq and hash of KnownChemical
Pull Request -
State: closed - Opened by joewandy about 4 years ago
#189 - Allow multiple input filenames (separated by comma) to be specified. …
Pull Request -
State: closed - Opened by joewandy about 4 years ago
- 1 comment
#188 - Allow ms2 database matching script to accept multiple input files
Issue -
State: closed - Opened by joewandy about 4 years ago
Labels: enhancement
#187 - Iss 186
Pull Request -
State: closed - Opened by sdrogers about 4 years ago
- 2 comments
#186 - Make a simple method for database search
Issue -
State: closed - Opened by sdrogers about 4 years ago
#185 - fixed
Pull Request -
State: closed - Opened by sdrogers about 4 years ago
#184 - test_multiple_chems sometimes fail
Issue -
State: closed - Opened by joewandy about 4 years ago
- 3 comments
Labels: bug
#183 - Persistent state in controllers
Pull Request -
State: closed - Opened by joewandy about 4 years ago
#182 - Iss 181
Pull Request -
State: closed - Opened by sdrogers about 4 years ago
#181 - Refactor exclusion window code to make it more flexible
Issue -
State: closed - Opened by sdrogers about 4 years ago
#180 - Persistent state in controllers...
Issue -
State: closed - Opened by sdrogers about 4 years ago
- 9 comments
Labels: question
#179 - Iss 178
Pull Request -
State: closed - Opened by sdrogers about 4 years ago
#178 - Create peak box from chemical object
Issue -
State: closed - Opened by sdrogers about 4 years ago
#177 - Add drift method to Simulator
Issue -
State: closed - Opened by vinnydavies about 4 years ago
- 10 comments
Labels: enhancement
#176 - Iss 174
Pull Request -
State: closed - Opened by joewandy about 4 years ago
- 1 comment