Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / glasgowcompbio/vimms issues and pull requests

#275 - How to use IAPI

Issue - State: closed - Opened by pisistrato 9 months ago - 2 comments

#274 - Retrieve mass-spec-utils Code

Issue - State: open - Opened by mcbrider5002 9 months ago

#273 - Refactor Scan Sampler to Use Previous Scan Level

Issue - State: open - Opened by mcbrider5002 9 months ago

#272 - IndexError: boolean index did not match indexed array along dimension 0

Issue - State: closed - Opened by oolonek about 1 year ago - 5 comments

#271 - Evaluation code throws NaN when computing intensity proportion

Issue - State: closed - Opened by joewandy over 1 year ago - 2 comments
Labels: bug

#270 - Bump cryptography from 3.4.8 to 41.0.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#269 - Initial ms1 scan of 1 peak

Issue - State: open - Opened by joewandy over 1 year ago - 1 comment
Labels: discussion

#268 - Charge state filtering for proteomics

Issue - State: closed - Opened by joewandy over 1 year ago - 1 comment
Labels: enhancement

#267 - Add poetry support

Issue - State: closed - Opened by joewandy over 1 year ago - 1 comment
Labels: enhancement

#266 - Noise peaks will never be fragmented

Issue - State: open - Opened by joewandy over 1 year ago
Labels: discussion

#265 - Scan timing bug

Issue - State: closed - Opened by joewandy over 1 year ago - 4 comments
Labels: bug

#264 - Bump cryptography from 3.4.8 to 41.0.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#263 - Bump requests from 2.26.0 to 2.31.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#262 - Bump tornado from 6.1 to 6.3.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#261 - Project documentation fails to build

Issue - State: closed - Opened by joewandy over 1 year ago - 1 comment
Labels: bug

#260 - Bump pymdown-extensions from 8.2 to 10.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#259 - TypeError: unsupported operand type(s) for *: 'float' and 'NoneType'

Issue - State: closed - Opened by joewandy over 1 year ago - 5 comments
Labels: bug

#258 - IndexError in mass spec

Issue - State: closed - Opened by joewandy over 1 year ago - 2 comments
Labels: bug

#257 - No Targeting Below 80 m/z

Issue - State: open - Opened by mcbrider5002 over 1 year ago - 2 comments
Labels: bug

#256 - Bump ipython from 7.27.0 to 8.10.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#255 - Bump cryptography from 3.4.8 to 39.0.1

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#254 - Unit test works locally but not on github action

Issue - State: closed - Opened by joewandy almost 2 years ago - 1 comment
Labels: bug

#253 - Re-implement old features

Issue - State: open - Opened by joewandy almost 2 years ago
Labels: enhancement

#252 - Bump jupyter-core from 4.8.1 to 4.11.2

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#251 - Bump certifi from 2021.5.30 to 2022.12.7

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#250 - Bump pillow from 8.3.2 to 9.3.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#249 - Bump joblib from 1.0.1 to 1.2.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#248 - Bump nbconvert from 6.1.0 to 6.5.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#247 - Bump nbconvert from 6.1.0 to 6.3.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#246 - Bump mistune from 0.8.4 to 2.0.3

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#245 - Renumber the demos

Issue - State: closed - Opened by vinnydavies over 2 years ago

#244 - TopN Simulator writing improperly to .mzML file

Issue - State: closed - Opened by samsonjm over 2 years ago - 2 comments
Labels: bug

#243 - Bump lxml from 4.6.3 to 4.9.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#242 - Bump numpy from 1.21.2 to 1.22.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#241 - Bump notebook from 6.4.4 to 6.4.12

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#240 - Processing Times Have Extreme Outliers

Issue - State: closed - Opened by mcbrider5002 over 2 years ago - 3 comments
Labels: question

#239 - Bump notebook from 6.4.4 to 6.4.10

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#238 - Isolating multiple chemicals produces only one fragevent in the scan

Issue - State: closed - Opened by joewandy over 2 years ago
Labels: bug

#237 - Bump jupyter-server from 1.11.0 to 1.15.4

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#236 - Bump pillow from 8.3.2 to 9.0.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#235 - JOSS Review TODO

Issue - State: closed - Opened by mcbrider5002 almost 3 years ago

#234 - [WIP] JOSS Review (@MKoesters)

Issue - State: closed - Opened by MKoesters almost 3 years ago - 2 comments

#233 - Bump ipython from 7.27.0 to 7.31.1

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#232 - Duplicate ROI creation codes

Issue - State: closed - Opened by joewandy almost 3 years ago
Labels: refactoring

#231 - Bump pillow from 8.3.2 to 9.0.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#230 - JOSS Review (jspaezp)

Issue - State: closed - Opened by jspaezp almost 3 years ago - 1 comment

#229 - Bump lxml from 4.6.3 to 4.6.5

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#228 - defaultInstrumentConfigurationRef attribute not included in mzML output

Issue - State: closed - Opened by RonanDaly about 3 years ago - 1 comment

#227 - simons joss edits

Pull Request - State: closed - Opened by sdrogers about 3 years ago

#226 - Invalid exclusion weights

Issue - State: closed - Opened by joewandy about 3 years ago - 1 comment
Labels: bug

#225 - FixedScanController bug

Issue - State: closed - Opened by joewandy about 3 years ago - 1 comment
Labels: bug

#224 - Update notebooks

Issue - State: closed - Opened by joewandy over 3 years ago
Labels: bug

#223 - Unable to use 64-bit packages

Issue - State: closed - Opened by joewandy over 3 years ago - 1 comment
Labels: discussion

#222 - File handler not closed correctly when writing mzML file

Issue - State: open - Opened by joewandy over 3 years ago
Labels: bug

#221 - Unit test is failing

Issue - State: closed - Opened by joewandy over 3 years ago - 2 comments
Labels: bug

#220 - ROI controller codes

Issue - State: closed - Opened by joewandy over 3 years ago
Labels: enhancement

#219 - ChemicalCreator produces random results in unit tests

Issue - State: closed - Opened by joewandy over 3 years ago
Labels: bug

#218 - Single unit test results are different from running all unit tests

Issue - State: closed - Opened by joewandy over 3 years ago - 1 comment
Labels: bug

#217 - Generic exclusion codes

Issue - State: closed - Opened by joewandy over 3 years ago - 2 comments
Labels: enhancement

#216 - Tests for multi sample box controller

Issue - State: closed - Opened by vinnydavies over 3 years ago - 1 comment
Labels: enhancement

#215 - Tests for Non Overlap Controllers

Issue - State: closed - Opened by vinnydavies over 3 years ago
Labels: enhancement

#214 - Bump py from 1.9.0 to 1.10.0

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#213 - Write documentation

Issue - State: closed - Opened by joewandy over 3 years ago - 1 comment
Labels: documentation

#212 - Simulator speed-up

Issue - State: closed - Opened by joewandy over 3 years ago - 1 comment
Labels: enhancement

#211 - Bump lxml from 4.5.2 to 4.6.3

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#210 - Bump pygments from 2.7.1 to 2.7.4

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#209 - Bump jinja2 from 2.11.2 to 2.11.3

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#208 - Bump pillow from 7.2.0 to 8.1.1

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#207 - Intensity at fragmentation [analysis code]

Issue - State: closed - Opened by sdrogers almost 4 years ago - 3 comments

#206 - Bump bleach from 3.2.1 to 3.3.0

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#205 - Boxcontroller

Pull Request - State: closed - Opened by vinnydavies almost 4 years ago

#204 - Make WeightedDEW controller faster

Issue - State: closed - Opened by joewandy almost 4 years ago - 5 comments
Labels: enhancement

#203 - Bump lxml from 4.5.2 to 4.6.2

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#202 - Breaking Overlap Controllers with RT Drift, then Correcting

Issue - State: open - Opened by mcbrider5002 almost 4 years ago - 6 comments
Labels: question

#201 - Improve thread-safety

Issue - State: closed - Opened by joewandy almost 4 years ago - 2 comments
Labels: question

#200 - Added a task manager to manage the number of custom scans being sent

Pull Request - State: closed - Opened by joewandy almost 4 years ago

#199 - Can't send custom scans with Tune 3.3

Issue - State: closed - Opened by joewandy about 4 years ago - 2 comments
Labels: bug

#198 - Loggin update

Pull Request - State: closed - Opened by vinnydavies about 4 years ago

#197 - Bump notebook from 6.1.4 to 6.1.5

Pull Request - State: closed - Opened by dependabot[bot] about 4 years ago
Labels: dependencies

#196 - Iss 195

Pull Request - State: closed - Opened by joewandy about 4 years ago - 1 comment
Labels: enhancement

#195 - Create a script to run in-silico simulation from a seed file

Issue - State: closed - Opened by joewandy about 4 years ago - 1 comment
Labels: enhancement

#194 - Duplicate MZMine Runner Code

Issue - State: closed - Opened by mcbrider5002 about 4 years ago - 2 comments
Labels: refactoring

#193 - Adduct and isotope prior of KnownChemicals

Issue - State: closed - Opened by joewandy about 4 years ago - 2 comments
Labels: bug

#192 - Cutoff parameterisation in Gaussian Chromatogram

Issue - State: open - Opened by sdrogers about 4 years ago - 2 comments
Labels: enhancement, question

#191 - Automate MS-DIAL

Issue - State: closed - Opened by joewandy about 4 years ago - 10 comments
Labels: bug

#190 - Make formula string and RT to be the key in eq and hash of KnownChemical

Pull Request - State: closed - Opened by joewandy about 4 years ago

#189 - Allow multiple input filenames (separated by comma) to be specified. …

Pull Request - State: closed - Opened by joewandy about 4 years ago - 1 comment

#188 - Allow ms2 database matching script to accept multiple input files

Issue - State: closed - Opened by joewandy about 4 years ago
Labels: enhancement

#187 - Iss 186

Pull Request - State: closed - Opened by sdrogers about 4 years ago - 2 comments

#186 - Make a simple method for database search

Issue - State: closed - Opened by sdrogers about 4 years ago

#185 - fixed

Pull Request - State: closed - Opened by sdrogers about 4 years ago

#184 - test_multiple_chems sometimes fail

Issue - State: closed - Opened by joewandy about 4 years ago - 3 comments
Labels: bug

#183 - Persistent state in controllers

Pull Request - State: closed - Opened by joewandy about 4 years ago

#182 - Iss 181

Pull Request - State: closed - Opened by sdrogers about 4 years ago

#181 - Refactor exclusion window code to make it more flexible

Issue - State: closed - Opened by sdrogers about 4 years ago

#180 - Persistent state in controllers...

Issue - State: closed - Opened by sdrogers about 4 years ago - 9 comments
Labels: question

#179 - Iss 178

Pull Request - State: closed - Opened by sdrogers about 4 years ago

#178 - Create peak box from chemical object

Issue - State: closed - Opened by sdrogers about 4 years ago

#177 - Add drift method to Simulator

Issue - State: closed - Opened by vinnydavies about 4 years ago - 10 comments
Labels: enhancement

#176 - Iss 174

Pull Request - State: closed - Opened by joewandy about 4 years ago - 1 comment