Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / glasgowcompbio/PALS issues and pull requests

#49 - Streamlit app does no longer seem to connect to GNPS

Issue - State: closed - Opened by justinjjvanderhooft 6 months ago - 1 comment

#48 - Bump streamlit from 0.78.0 to 1.11.1

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#47 - GNPS analysis throwing non-finite values error

Issue - State: open - Opened by mita0000 almost 3 years ago - 1 comment

#46 - GNPS analysis doesn't work

Issue - State: open - Opened by joewandy over 3 years ago - 3 comments
Labels: bug

#45 - Parallelise running multiple comparisons

Issue - State: open - Opened by joewandy over 3 years ago - 1 comment
Labels: enhancement

#44 - Tidy up PALS output

Issue - State: open - Opened by joewandy almost 4 years ago
Labels: enhancement

#43 - GNPS command-line analysis

Issue - State: open - Opened by joewandy almost 4 years ago
Labels: enhancement

#42 - Broken CSV upload in GUI

Issue - State: closed - Opened by joewandy almost 4 years ago - 1 comment
Labels: bug

#41 - Incorporate spectrum resolver in molfam / motif analysis?

Issue - State: open - Opened by joewandy over 4 years ago - 2 comments
Labels: enhancement

#40 - Add minimum number of hits to pathway analysis

Issue - State: closed - Opened by joewandy over 4 years ago - 1 comment
Labels: enhancement

#39 - Add heatmaps for pathways

Issue - State: closed - Opened by RonanDaly over 4 years ago - 1 comment
Labels: enhancement, manuscript

#38 - Add example data for MF and Mass2Motif data

Issue - State: closed - Opened by RonanDaly over 4 years ago - 3 comments
Labels: manuscript

#37 - PALS error with GNPS FBMN network

Issue - State: closed - Opened by joewandy over 4 years ago - 9 comments
Labels: bug

#36 - Read GNPS metadata directly from the zip file

Issue - State: open - Opened by joewandy over 4 years ago - 2 comments
Labels: enhancement, manuscript

#35 - Add fold change or PLAGE score to PALS Viewer

Issue - State: open - Opened by joewandy over 4 years ago - 1 comment
Labels: enhancement

#34 - Download more data in PALS Viewer

Issue - State: open - Opened by joewandy over 4 years ago - 1 comment
Labels: enhancement

#33 - Update readme

Issue - State: closed - Opened by joewandy over 4 years ago
Labels: documentation, manuscript

#32 - Activity Level Calculation

Issue - State: closed - Opened by joewandy over 4 years ago - 1 comment
Labels: bug, question, manuscript

#31 - Google finding wrong canonical url for page

Issue - State: closed - Opened by RonanDaly over 4 years ago - 2 comments

#30 - Formatting of very small numbers

Issue - State: closed - Opened by joewandy over 4 years ago - 2 comments
Labels: bug, manuscript

#29 - Integrate MS2LDA Analysis to PALS Viewer

Issue - State: closed - Opened by joewandy over 4 years ago - 1 comment
Labels: enhancement, manuscript

#28 - Integrate GNPS analysis to PALS Viewer

Issue - State: closed - Opened by joewandy over 4 years ago - 1 comment
Labels: enhancement, manuscript

#27 - Sorting by Formula Coverage doesn't work

Issue - State: closed - Opened by RonanDaly over 4 years ago - 2 comments
Labels: manuscript

#26 - Setup Neo4j (Reactome) on the server

Issue - State: closed - Opened by joewandy over 4 years ago - 2 comments
Labels: manuscript

#25 - Configure SSL on the server

Issue - State: closed - Opened by joewandy over 4 years ago - 1 comment

#24 - Add a Run button to PALS Viewer

Issue - State: open - Opened by joewandy over 4 years ago - 5 comments
Labels: enhancement, manuscript

#23 - Add GSEA to PALS Viewer

Issue - State: open - Opened by joewandy over 4 years ago
Labels: bug, manuscript

#22 - User-friendly way to run PALS Viewer locally

Issue - State: open - Opened by joewandy over 4 years ago
Labels: enhancement

#21 - Dump the latest Reactome database

Issue - State: closed - Opened by joewandy over 4 years ago
Labels: manuscript

#20 - Create a page for glasgowcompbio.org

Issue - State: open - Opened by joewandy over 4 years ago - 1 comment
Labels: manuscript

#19 - Configure nginx on the server

Issue - State: closed - Opened by joewandy over 4 years ago - 2 comments
Labels: manuscript

#18 - Correctly start up PALS Viewer on the server

Issue - State: closed - Opened by joewandy over 4 years ago - 3 comments

#17 - User guide & general usage instruction

Issue - State: closed - Opened by joewandy over 4 years ago - 2 comments
Labels: manuscript

#16 - Add interactive examples

Issue - State: closed - Opened by joewandy over 4 years ago - 1 comment
Labels: manuscript

#15 - Update PALS to handle cmpd_ids from a variety of DBs

Issue - State: open - Opened by kmcluskey over 4 years ago

#14 - Remove pathways with single formula

Issue - State: closed - Opened by kmcluskey over 4 years ago - 1 comment

#13 - PALS Package missing dependancies when installed

Issue - State: closed - Opened by kmcluskey over 4 years ago - 3 comments
Labels: manuscript

#12 - Update synthetic experiment notebook

Issue - State: closed - Opened by joewandy almost 5 years ago

#10 - Evaluation

Issue - State: closed - Opened by joewandy almost 5 years ago - 1 comment

#9 - Download the latest KEGG database

Issue - State: open - Opened by joewandy almost 5 years ago

#8 - Implements traditional ORA

Issue - State: closed - Opened by joewandy almost 5 years ago - 1 comment

#7 - Zero p-values shown in PALS results in PiMP

Issue - State: open - Opened by joewandy almost 5 years ago - 1 comment

#5 - Write README

Issue - State: closed - Opened by joewandy almost 5 years ago - 1 comment

#4 - Create a command-line program to run PALS

Issue - State: closed - Opened by joewandy almost 5 years ago

#3 - Replace the pathway analysis codes in Pimp with this package

Issue - State: open - Opened by joewandy almost 5 years ago

#2 - Suspicious warning

Issue - State: open - Opened by joewandy almost 5 years ago - 2 comments

#1 - neo4j username and password appear to be hard coded.

Issue - State: closed - Opened by RonanDaly almost 5 years ago