Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / girder/large_image issues and pull requests

#1260 - Don't use dask threads when using nd2 to fetch tiles

Pull Request - State: closed - Opened by manthey over 1 year ago

#1259 - Reduce pyvips log level.

Pull Request - State: closed - Opened by manthey over 1 year ago

#1259 - Reduce pyvips log level.

Pull Request - State: closed - Opened by manthey over 1 year ago

#1259 - Reduce pyvips log level.

Pull Request - State: closed - Opened by manthey over 1 year ago

#1258 - Fix some rst quoting issues

Pull Request - State: closed - Opened by manthey over 1 year ago

#1258 - Fix some rst quoting issues

Pull Request - State: closed - Opened by manthey over 1 year ago

#1258 - Fix some rst quoting issues

Pull Request - State: closed - Opened by manthey over 1 year ago

#1257 - Use ruff for linting

Pull Request - State: closed - Opened by manthey over 1 year ago

#1257 - Use ruff for linting

Pull Request - State: closed - Opened by manthey over 1 year ago

#1257 - Use ruff for linting

Pull Request - State: closed - Opened by manthey over 1 year ago

#1256 - Fix frame selection bugs

Pull Request - State: closed - Opened by annehaley over 1 year ago - 1 comment

#1256 - Fix frame selection bugs

Pull Request - State: closed - Opened by annehaley over 1 year ago - 1 comment

#1256 - Fix frame selection bugs

Pull Request - State: closed - Opened by annehaley over 1 year ago - 1 comment

#1255 - Tile Source getRegion(format='numpy') raises error

Issue - State: closed - Opened by annehaley over 1 year ago

#1254 - Speed up a few tests

Pull Request - State: closed - Opened by manthey over 1 year ago

#1253 - Add an endpoint to make it easier to replace thumbnails

Pull Request - State: closed - Opened by manthey over 1 year ago

#1252 - Allow caching rounded histograms

Pull Request - State: closed - Opened by manthey over 1 year ago

#1251 - Fix filter button on item lists

Pull Request - State: closed - Opened by manthey over 1 year ago

#1250 - Allow hiding metadata on item pages

Pull Request - State: closed - Opened by manthey over 1 year ago

#1249 - Adjust the bounds on non geospatial leaflet maps

Pull Request - State: closed - Opened by manthey over 1 year ago

#1248 - Presets from Large Image Configuration file

Pull Request - State: closed - Opened by annehaley over 1 year ago - 16 comments

#1247 - Use node 14 in CI

Pull Request - State: closed - Opened by manthey over 1 year ago

#1246 - Relax some specified versions to make dependabot happy

Pull Request - State: closed - Opened by manthey over 1 year ago

#1245 - Guard against ICC profiles that won't parse

Pull Request - State: closed - Opened by manthey over 1 year ago

#1244 - Hide specific metadata from the item page based on config

Issue - State: closed - Opened by manthey over 1 year ago - 1 comment

#1243 - Better guards on ACL migration

Pull Request - State: closed - Opened by manthey over 1 year ago

#1242 - The exception raised by jp2 files from the nd2 reader changed

Pull Request - State: closed - Opened by manthey over 1 year ago

#1241 - Support showing data from subkeys in annotation lists.

Pull Request - State: closed - Opened by manthey over 1 year ago

#1240 - Switch to Ubuntu 22.04 as a base for the test docker.

Pull Request - State: closed - Opened by manthey over 1 year ago

#1239 - Presets from config

Issue - State: closed - Opened by manthey over 1 year ago

#1238 - Harmonize the girder code paths for image conversion

Pull Request - State: closed - Opened by manthey over 1 year ago

#1237 - Create, select, and delete image view presets

Pull Request - State: closed - Opened by annehaley over 1 year ago - 11 comments

#1236 - Rename a css class.

Pull Request - State: closed - Opened by manthey over 1 year ago

#1235 - Allow editing metadata in item lists

Pull Request - State: closed - Opened by manthey over 1 year ago

#1234 - Improve how dtypes are reported from #1224

Pull Request - State: closed - Opened by manthey over 1 year ago

#1233 - Frame selection keyboard shortcuts

Pull Request - State: closed - Opened by annehaley over 1 year ago - 1 comment

#1232 - Pin pydantic for rio-cog

Pull Request - State: closed - Opened by manthey over 1 year ago

#1231 - Fix a bug calculating some histograms

Pull Request - State: closed - Opened by manthey over 1 year ago

#1230 - Frame selector widget various fixes

Pull Request - State: closed - Opened by annehaley over 1 year ago - 2 comments

#1229 - More default channel colors

Issue - State: open - Opened by manthey over 1 year ago - 1 comment

#1228 - Newer openslide and vips libraries read dicom.

Pull Request - State: closed - Opened by manthey over 1 year ago

#1227 - Fix updating the hidden style field for the frame selector

Pull Request - State: closed - Opened by manthey over 1 year ago - 1 comment

#1226 - Don't show frame controls outside of the geojs viewer

Pull Request - State: closed - Opened by manthey over 1 year ago

#1225 - For frame compositing, defer initial histogram query

Issue - State: closed - Opened by manthey over 1 year ago

#1224 - Simplify style locking.

Pull Request - State: closed - Opened by manthey over 1 year ago

#1223 - Clean up some old slideatlas url references

Pull Request - State: closed - Opened by manthey over 1 year ago

#1222 - Channel colors & sliders

Pull Request - State: closed - Opened by annehaley over 1 year ago - 7 comments

#1220 - Pass style to histogram endpoint as json

Pull Request - State: closed - Opened by manthey over 1 year ago

#1219 - Channel compositing color picker sometimes unreachable

Issue - State: closed - Opened by manthey over 1 year ago

#1218 - Harden reading some nc files.

Pull Request - State: closed - Opened by manthey over 1 year ago

#1217 - Colors for channels based on name should use regex

Issue - State: closed - Opened by manthey over 1 year ago - 4 comments

#1216 - Updated example_usage.rst for typo

Pull Request - State: closed - Opened by subinkitware over 1 year ago

#1215 - When restyling a source, share band range calculations

Pull Request - State: closed - Opened by manthey over 1 year ago

#1214 - Add tile source bandCount attribute

Pull Request - State: closed - Opened by manthey over 1 year ago

#1213 - ipyleaflet coordinate issues for non-geo images

Issue - State: closed - Opened by banesullivan over 1 year ago - 1 comment

#1212 - Reduce the default max texture size for frame quads.

Pull Request - State: closed - Opened by manthey over 1 year ago

#1211 - Show channel names in axis mode when known

Issue - State: closed - Opened by manthey over 1 year ago

#1210 - Fix clearing the style threshold cache

Pull Request - State: closed - Opened by manthey over 1 year ago

#1209 - Minor linting fix

Pull Request - State: closed - Opened by manthey over 1 year ago

#1208 - Change how extensions and fallback priorities in Girder interact

Pull Request - State: closed - Opened by manthey over 1 year ago

#1207 - Harden the nd2 source to allow it to read more files.

Pull Request - State: closed - Opened by manthey over 1 year ago

#1206 - Disable all caching

Issue - State: closed - Opened by banesullivan over 1 year ago - 7 comments

#1205 - Custom metadata views per user

Issue - State: open - Opened by manthey over 1 year ago

#1204 - Read WSI through DICOM web

Issue - State: closed - Opened by manthey over 1 year ago

#1203 - Fix a scope issue when deleting metadata

Pull Request - State: closed - Opened by manthey over 1 year ago

#1202 - Allow configuring which metadata can be added to items

Pull Request - State: closed - Opened by manthey over 1 year ago - 1 comment

#1201 - Allow rounding histogram bin edges and reducing bin counts

Pull Request - State: closed - Opened by manthey over 1 year ago - 1 comment

#1200 - Allow specifying an empty style dict.

Pull Request - State: closed - Opened by manthey over 1 year ago

#1199 - Add populated levels information to geospatial sources

Pull Request - State: closed - Opened by manthey over 1 year ago

#1198 - Update python CI versions to follow security releases

Pull Request - State: closed - Opened by manthey over 1 year ago

#1197 - Report actual populated image levels

Pull Request - State: closed - Opened by manthey over 1 year ago

#1196 - Improve dicom multi level detection

Pull Request - State: closed - Opened by manthey over 1 year ago

#1195 - Fix converting multiframe files that vips reads as single frame

Pull Request - State: closed - Opened by manthey over 1 year ago

#1194 - Another refactor of the which-folders-have-annotations pipeline

Pull Request - State: closed - Opened by manthey over 1 year ago

#1193 - Refactor reading the .large_image_config.yaml file

Pull Request - State: closed - Opened by manthey over 1 year ago

#1192 - Change how extensions and fallback priorities interact

Pull Request - State: closed - Opened by manthey over 1 year ago

#1191 - Alter jpeg priority with the PIL source

Pull Request - State: closed - Opened by manthey over 1 year ago

#1190 - Fix NeededInitPrefix namepsace errors

Pull Request - State: closed - Opened by banesullivan over 1 year ago

#1189 - Improve JSONDict usage

Pull Request - State: closed - Opened by banesullivan over 1 year ago

#1188 - Minor code cleanup as recommended by pyupgrade.

Pull Request - State: closed - Opened by manthey over 1 year ago

#1187 - Log more often when importing files or making large images.

Pull Request - State: closed - Opened by manthey over 1 year ago

#1186 - Non-transparent outside bounds with getTile for tifs without style

Issue - State: open - Opened by banesullivan over 1 year ago - 7 comments

#1185 - Add a button to clear the filter on item lists

Pull Request - State: closed - Opened by manthey over 1 year ago

#1184 - Add filters to metadata columns

Pull Request - State: closed - Opened by manthey over 1 year ago

#1183 - Reduce memory use in a mongo aggregation pipeline

Pull Request - State: closed - Opened by manthey over 1 year ago

#1182 - Remove rasterio dep on pyproj

Pull Request - State: closed - Opened by banesullivan over 1 year ago - 10 comments

#1181 - Ship Docker images with Python 3.10

Pull Request - State: closed - Opened by banesullivan over 1 year ago - 1 comment

#1180 - Update code for an upstream linting change

Pull Request - State: closed - Opened by manthey over 1 year ago

#1179 - Create conda-forge recipe for rasterio source after it ships to PyPI

Issue - State: closed - Opened by banesullivan over 1 year ago - 1 comment

#1175 - Histogram range editor

Pull Request - State: closed - Opened by annehaley over 1 year ago - 10 comments

#1173 - add data file readme

Pull Request - State: closed - Opened by banesullivan over 1 year ago - 2 comments

#1171 - Test an imagej file.

Pull Request - State: closed - Opened by manthey over 1 year ago

#1170 - Test with a qptiff file

Pull Request - State: closed - Opened by manthey over 1 year ago

#1169 - Faceted search by column for item lists with metadata

Issue - State: open - Opened by manthey over 1 year ago

#1168 - Parse qptiff and imagej vendor information.

Pull Request - State: closed - Opened by manthey over 1 year ago

#1167 - Avoid using $unionWith as it isn't supported some places

Pull Request - State: closed - Opened by manthey over 1 year ago

#1166 - Add manual index names where index names might get too long

Pull Request - State: closed - Opened by zachmullen over 1 year ago - 7 comments

#1165 - Fix thumbnail query typo

Pull Request - State: closed - Opened by zachmullen over 1 year ago
Labels: bug