giovp/spatialdata-sandbox issues and pull requests

#49 - add visiumhd crc2 dataset

Pull Request - State: closed - Opened by melonora 4 months ago

#48 - final review of ssam-osmfish

Pull Request - State: closed - Opened by Kwakyejin 4 months ago - 1 comment

#47 - Add SpaceM datasets

Pull Request - State: closed - Opened by aeisenbarth 5 months ago - 6 comments

#46 - remove out of for loop

Pull Request - State: closed - Opened by melonora 7 months ago

#45 - change rmdir to rm -r

Pull Request - State: closed - Opened by melonora 7 months ago

#44 - check exists

Pull Request - State: closed - Opened by melonora 7 months ago

#43 - update visiumhd

Pull Request - State: closed - Opened by melonora 7 months ago

#42 - iss data

Pull Request - State: closed - Opened by LucaMarconato 9 months ago

#41 - new dbs

Pull Request - State: closed - Opened by Farbodch 9 months ago

#40 - visium hd dataset

Pull Request - State: closed - Opened by LucaMarconato 10 months ago

#39 - testing all public visium versions

Pull Request - State: closed - Opened by LucaMarconato 11 months ago

#38 - remove argument

Pull Request - State: closed - Opened by melonora 11 months ago

#37 - fix_radii

Pull Request - State: closed - Opened by melonora 11 months ago

#36 - Merfish Xenium radii fail

Issue - State: closed - Opened by melonora 11 months ago - 3 comments

#35 - remove outdated keyword argument visium

Pull Request - State: closed - Opened by melonora 11 months ago - 2 comments

#34 - added tests for all the xenium versions

Pull Request - State: closed - Opened by LucaMarconato 11 months ago

#33 - testing all the versions of xenium from public 10x data

Pull Request - State: closed - Opened by LucaMarconato 11 months ago - 1 comment

#32 - Using concatenate() in to_zarr

Pull Request - State: closed - Opened by LucaMarconato about 1 year ago

#31 - using spatialdata-io for the visium dataset

Pull Request - State: closed - Opened by LucaMarconato about 1 year ago

#30 - move to local

Pull Request - State: closed - Opened by Kwakyejin over 1 year ago - 1 comment

#29 - fixed download script for merfish data

Pull Request - State: closed - Opened by LucaMarconato over 1 year ago

#28 - SSAM osmfish dataset

Pull Request - State: closed - Opened by Kwakyejin over 1 year ago

#27 - Add to_zarr.py for stereoseq data

Pull Request - State: closed - Opened by LLehner over 1 year ago - 1 comment

#26 - draft seqfish

Pull Request - State: closed - Opened by LucaMarconato over 1 year ago - 1 comment

#25 - Add image fusion notebook

Pull Request - State: closed - Opened by michalk8 over 1 year ago

#24 - Download vizgen_merscope sample

Pull Request - State: closed - Opened by quentinblampey almost 2 years ago - 1 comment

#23 - Refactoring/modules hierarchy

Pull Request - State: closed - Opened by LucaMarconato almost 2 years ago

#22 - xenium_alignment notebook ROI selection

Pull Request - State: closed - Opened by LucaMarconato almost 2 years ago

#21 - Xenium alignment notbook

Pull Request - State: closed - Opened by LucaMarconato almost 2 years ago

#20 - Xenium update

Pull Request - State: closed - Opened by LucaMarconato almost 2 years ago

#19 - Removed # from curl in xenium_io

Pull Request - State: closed - Opened by timtreis almost 2 years ago

#18 - removed path from name of elements

Pull Request - State: closed - Opened by LucaMarconato almost 2 years ago - 1 comment

#17 - fixes after review of spatialdata-io pr (from giovp)

Pull Request - State: closed - Opened by LucaMarconato almost 2 years ago - 2 comments

#16 - various updates and adding mcmicro and steinbock

Pull Request - State: closed - Opened by giovp almost 2 years ago - 1 comment

#16 - various updates and adding mcmicro and steinbock

Pull Request - State: closed - Opened by giovp almost 2 years ago - 1 comment

#15 - update xenium

Pull Request - State: closed - Opened by giovp almost 2 years ago

#14 - Add Steinbock/IMC example

Pull Request - State: closed - Opened by sagar87 about 2 years ago - 1 comment

#13 - Add codex example

Pull Request - State: closed - Opened by sagar87 about 2 years ago - 2 comments

#12 - Fix Xenium download script

Pull Request - State: closed - Opened by ivirshup about 2 years ago

#11 - To zarr

Pull Request - State: closed - Opened by LucaMarconato over 2 years ago

#10 - Writer/visium

Pull Request - State: closed - Opened by giovp over 2 years ago

#9 - can't download visium dataset

Issue - State: closed - Opened by giovp over 2 years ago

#8 - add ome-zarr writers

Pull Request - State: closed - Opened by giovp over 2 years ago - 1 comment

#7 - fix nanostring paths

Pull Request - State: closed - Opened by giovp over 2 years ago

#6 - Mcmicro

Pull Request - State: closed - Opened by melonora over 2 years ago - 14 comments

#5 - added merfish mouse brain dataset

Pull Request - State: closed - Opened by LucaMarconato over 2 years ago - 1 comment

#4 - Add nanostring dataset

Pull Request - State: closed - Opened by MxMstrmn over 2 years ago

#3 - add mibitof

Pull Request - State: closed - Opened by giovp over 2 years ago

#2 - Update layout

Pull Request - State: closed - Opened by ivirshup over 2 years ago

#1 - datasets

Issue - State: closed - Opened by giovp over 2 years ago - 15 comments

GitHub / giovp/spatialdata-sandbox issues and pull requests