Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / ginkgobioworks/edge issues and pull requests
#102 - Bump django from 2.2.20 to 3.2.24
Pull Request -
State: open - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#101 - SSR Annotation Handling
Pull Request -
State: closed - Opened by alecethell almost 2 years ago
#100 - Change BLAST word size default to 11, add optional arg in BLAST/PCR API
Pull Request -
State: closed - Opened by alecethell almost 2 years ago
#99 - Recombine and SSR now accept empty annotation lists
Pull Request -
State: closed - Opened by rystecher almost 2 years ago
#98 - Bump flower from 0.9.2 to 1.2.0
Pull Request -
State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies
#97 - Create SSR UI
Pull Request -
State: closed - Opened by alecethell about 2 years ago
- 1 comment
#96 - add sequence to feature and option to get in api
Pull Request -
State: closed - Opened by Lioscro about 2 years ago
- 3 comments
#95 - return template annotations from pcr
Pull Request -
State: closed - Opened by Lioscro about 2 years ago
- 1 comment
#94 - Multithreaded, JSON-output, higher performance BLAST; no default primer design for recombination done through UI
Pull Request -
State: closed - Opened by alecethell about 2 years ago
- 2 comments
#93 - Support ssr
Pull Request -
State: closed - Opened by benjiec about 2 years ago
#92 - Create API for getting coordinates of diff between child and parent genomes
Pull Request -
State: closed - Opened by alecethell about 2 years ago
- 1 comment
#91 - Patch Reference-based Fasta Export
Pull Request -
State: closed - Opened by alecethell about 2 years ago
#90 - fixed flake8, bumped version to 3.25.1
Pull Request -
State: closed - Opened by alecethell about 2 years ago
#89 - Create Export FASTA API
Pull Request -
State: closed - Opened by alecethell about 2 years ago
- 1 comment
#88 - Bump numpy from 1.12.1 to 1.22.0
Pull Request -
State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies
#87 - Implement reference-based chunks
Pull Request -
State: closed - Opened by alecethell over 2 years ago
#86 - Bump django from 2.2.20 to 2.2.28
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 1 comment
Labels: dependencies
#85 - Bump numpy from 1.12.1 to 1.21.0
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 1 comment
Labels: dependencies
#84 - order the fragments when we make genome indicies, to may be avoid dea…
Pull Request -
State: closed - Opened by benjiec over 2 years ago
#83 - Bump django from 2.2.20 to 2.2.27
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 1 comment
Labels: dependencies
#82 - Bump celery from 4.1.0 to 5.2.2
Pull Request -
State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies
#81 - None strand GFF import fix
Pull Request -
State: closed - Opened by alecethell over 2 years ago
#80 - all annotation types now default to "misc"
Pull Request -
State: closed - Opened by alecethell almost 3 years ago
#79 - updated README
Pull Request -
State: closed - Opened by benjiec almost 3 years ago
#78 - Bump django from 2.2.20 to 2.2.25
Pull Request -
State: closed - Opened by dependabot[bot] almost 3 years ago
- 1 comment
Labels: dependencies
#77 - further reduce race condition: better fragment locking, moving delaye…
Pull Request -
State: closed - Opened by benjiec almost 3 years ago
#76 - add a select_for_update lock
Pull Request -
State: closed - Opened by benjiec almost 3 years ago
#75 - allow insertion of sequences without deletion via hr
Pull Request -
State: closed - Opened by benjiec almost 3 years ago
#74 - Improve annotation of integrated DNA and regions around the integration location
Pull Request -
State: closed - Opened by benjiec almost 3 years ago
#73 - construct fasta using tempfile and construct separate blastdb per db …
Pull Request -
State: closed - Opened by benjiec almost 3 years ago
#72 - improved subfeature importing, wrap around circular end features
Pull Request -
State: closed - Opened by alecethell almost 3 years ago
#71 - bump bc-bio and add some tests
Pull Request -
State: closed - Opened by benjiec almost 3 years ago
#70 - Use v0.6.7 of bcbio-gff
Pull Request -
State: closed - Opened by raymond-lam almost 3 years ago
#69 - Add --refresh command line argument to Django admin command build_genome_blastdb
Pull Request -
State: closed - Opened by pflans almost 3 years ago
#68 - if server is a ro server, and requires location index or genome DB, f…
Pull Request -
State: closed - Opened by benjiec almost 3 years ago
#67 - Test annotation on reverse strand
Pull Request -
State: closed - Opened by benjiec almost 3 years ago
#66 - Include Subfeatures in GFF Export
Pull Request -
State: closed - Opened by alecethell almost 3 years ago
#65 - resolved flake8 syntax marks for importer, test_importer, and recombine
Pull Request -
State: closed - Opened by alecethell almost 3 years ago
#64 - Import CDS "join" subfragments from GFF
Pull Request -
State: closed - Opened by alecethell almost 3 years ago
- 1 comment
#63 - Update PyPI token username
Pull Request -
State: closed - Opened by bhyman about 3 years ago
- 1 comment
#62 - Revert "Publish to PyPi via GitHub Actions (#59)"
Pull Request -
State: closed - Opened by bhyman about 3 years ago
- 2 comments
#61 - Testing Travis builds on PRs
Pull Request -
State: closed - Opened by bhyman about 3 years ago
#60 - Add Bower CI/CD dependency
Pull Request -
State: open - Opened by bhyman about 3 years ago
#59 - Publish to PyPi via GitHub Actions
Pull Request -
State: closed - Opened by bhyman about 3 years ago
#58 - Update FullStory CDN link, recording snippet
Pull Request -
State: closed - Opened by bhyman about 3 years ago
#57 - Bump django from 2.2.20 to 2.2.24
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 1 comment
Labels: dependencies
#56 - Bump django from 2.2.20 to 2.2.22
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 1 comment
Labels: dependencies
#55 - Bump django from 2.2.20 to 2.2.21
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 1 comment
Labels: dependencies
#54 - return feature information, along with annotations
Pull Request -
State: closed - Opened by benjiec over 3 years ago
- 2 comments
#53 - supports annotation of multiple chunks under one annotation
Pull Request -
State: closed - Opened by benjiec over 3 years ago
#52 - Add code formatters
Pull Request -
State: closed - Opened by Chris7 over 3 years ago
- 3 comments
#51 - Add ability to derive a new genome from adding a fragment
Pull Request -
State: closed - Opened by Chris7 over 3 years ago
#50 - Update dependencies
Pull Request -
State: closed - Opened by jamieleecho over 3 years ago
#49 - schedule task to build genome index if one is not available
Pull Request -
State: closed - Opened by benjiec over 3 years ago
#48 - Bump django from 2.2.10 to 2.2.20
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies
#47 - Bump django from 2.2.10 to 2.2.18
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 1 comment
Labels: dependencies
#46 - Allow annotation of donor DNA when doing a HR
Pull Request -
State: closed - Opened by benjiec over 3 years ago
#45 - add API endpoint for searching annotations for a field in qualifiers dictionary
Pull Request -
State: closed - Opened by benjiec over 3 years ago
#44 - completely removing evalue param from blast
Pull Request -
State: closed - Opened by benjiec almost 4 years ago
- 3 comments
#43 - on large import of a genome w/o any annotation, divide up only chunk …
Pull Request -
State: closed - Opened by benjiec about 4 years ago
- 2 comments
#42 - Large import
Pull Request -
State: closed - Opened by benjiec about 4 years ago
#41 - Bump django from 2.2.10 to 2.2.13
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 1 comment
Labels: dependencies
#40 - fix import and mostly export GFF woes
Pull Request -
State: closed - Opened by benjiec over 4 years ago
#39 - add qualifiers from JSON API to annotation
Pull Request -
State: closed - Opened by benjiec over 4 years ago
#38 - Bump django from 2.2.8 to 2.2.10
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
Labels: dependencies
#37 - fix multiple recombinations on multiple fragments
Pull Request -
State: closed - Opened by benjiec over 4 years ago
- 1 comment
#36 - Bump django from 2.2.6 to 2.2.8
Pull Request -
State: closed - Opened by dependabot[bot] almost 5 years ago
Labels: dependencies
#35 - Add queryset evaluation to actually lock root genome
Pull Request -
State: closed - Opened by yaoyuyang almost 5 years ago
- 1 comment
#34 - Setup fullstory recording
Pull Request -
State: closed - Opened by yaoyuyang almost 5 years ago
- 2 comments
#33 - Lock root genome to prevent genomes recombination corruption
Pull Request -
State: closed - Opened by yaoyuyang almost 5 years ago
- 1 comment
#32 - Update python
Pull Request -
State: closed - Opened by jamieleecho almost 5 years ago
#31 - Update packages
Pull Request -
State: closed - Opened by jamieleecho almost 5 years ago
- 2 comments
#30 - Update Dockerfile to enable npm setup
Pull Request -
State: closed - Opened by yaoyuyang about 5 years ago
- 1 comment
#29 - Fix export for negative strand
Pull Request -
State: closed - Opened by Chris7 over 5 years ago
#28 - Search annotation by qualifiers
Pull Request -
State: closed - Opened by benjiec almost 6 years ago
- 6 comments
#27 - Upgrade bcbio gff to 0.6.4
Pull Request -
State: closed - Opened by yaoyuyang over 6 years ago
- 2 comments
#26 - Upgrade bcbio to 0.6.4 to reduce import gff errors
Issue -
State: closed - Opened by yaoyuyang over 6 years ago
#25 - Improve Edge error message return for import genome
Issue -
State: open - Opened by yaoyuyang over 6 years ago
#24 - Last modified date
Issue -
State: open - Opened by Chris7 over 6 years ago
#23 - Remove name for shared_task so that it uses edge.tasks.xxx as name
Pull Request -
State: closed - Opened by yaoyuyang over 6 years ago
#22 - Add refresh option for build_fragment_fasta
Pull Request -
State: closed - Opened by yaoyuyang over 6 years ago
- 1 comment
#21 - Add an option to force rebuild blastdb for fragments
Issue -
State: closed - Opened by yaoyuyang over 6 years ago
- 1 comment
#20 - EDGE show sequence needs to have a better format
Issue -
State: open - Opened by yaoyuyang over 6 years ago
#19 - Upgrade celery to 4.1.0 and flower to 0.9.2
Pull Request -
State: closed - Opened by yaoyuyang almost 7 years ago
#18 - Upgrade celery to 4.1.0
Issue -
State: closed - Opened by yaoyuyang almost 7 years ago
- 1 comment
#17 - Fix some issues with genomic PCR
Pull Request -
State: closed - Opened by benjiec almost 7 years ago
- 5 comments
#16 - Import gff ui
Pull Request -
State: closed - Opened by yaoyuyang almost 7 years ago
- 7 comments
#15 - Upgrade webassets to deal with Django upgrade
Pull Request -
State: closed - Opened by myw almost 7 years ago
Labels: bug
#14 - Upgrade to Django 1.11
Pull Request -
State: closed - Opened by Chris7 almost 7 years ago
#13 - Update readme to include using docker-compose directly
Pull Request -
State: closed - Opened by yaoyuyang almost 7 years ago
#12 - Recombination doesn't work with docker-compose setup
Issue -
State: closed - Opened by yaoyuyang almost 7 years ago
#11 - Set up rabbit in docker-compose and use in app
Pull Request -
State: closed - Opened by yaoyuyang almost 7 years ago
#10 - Add an import genome button
Issue -
State: closed - Opened by yaoyuyang almost 7 years ago
- 2 comments
Labels: enhancement
#9 - Fix export button link bug
Pull Request -
State: closed - Opened by yaoyuyang almost 7 years ago
#8 - Add the fix for syncdb
Pull Request -
State: closed - Opened by yaoyuyang almost 7 years ago
#7 - Wait for database to bootup before run server
Issue -
State: closed - Opened by yaoyuyang almost 7 years ago
- 1 comment
#6 - Added Edge export button
Pull Request -
State: closed - Opened by aruginkgo almost 7 years ago
- 5 comments
#5 - Edge export button
Pull Request -
State: closed - Opened by aruginkgo almost 7 years ago
- 1 comment
#4 - More descriptive annotation needed from Edge
Issue -
State: open - Opened by lfaller about 7 years ago
#3 - Add button in UI to export edge genome to gff file
Issue -
State: closed - Opened by yaoyuyang over 7 years ago
- 1 comment