Ecosyste.ms: Issues

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GitHub / gibsramen/qadabra issues and pull requests

#39 - update plot_pca.py to items(), iteritems deprecated() in pandas v1.5.0

Pull Request - State: closed - Opened by yangchen2 over 1 year ago

#38 - maaslin2 error for covariate with > 2 levels

Pull Request - State: closed - Opened by yangchen2 over 1 year ago

#37 - maaslin2 error for covariate with > 2 levels

Issue - State: closed - Opened by yangchen2 over 1 year ago - 1 comment

#35 - differentials_table.html opens blank HTML

Issue - State: closed - Opened by yangchen2 over 1 year ago

#34 - Bokeh 'names' attribute deprecated, replaced under 'tooltips'

Pull Request - State: closed - Opened by yangchen2 over 1 year ago

#33 - bokeh attribute error

Pull Request - State: closed - Opened by yangchen2 over 1 year ago

#32 - Pin MPL & Pandas dependencies

Pull Request - State: open - Opened by gibsramen about 2 years ago

#31 - Target and Reference Level Issue

Issue - State: open - Opened by SAlkh90-temp about 2 years ago

#30 - Refactor to v0.3.0a1

Pull Request - State: closed - Opened by gibsramen about 2 years ago

#29 - Refactor for multiple dataset support

Pull Request - State: closed - Opened by gibsramen over 2 years ago

#28 - Add Kendall tau as rank correlation metric

Issue - State: open - Opened by gibsramen over 2 years ago

#27 - Fix typo in PCA

Issue - State: closed - Opened by gibsramen over 2 years ago

#26 - Fix bug with R renaming features if they start with a numeral

Pull Request - State: closed - Opened by gibsramen over 2 years ago

#25 - Rework repeated K-fold CV

Issue - State: open - Opened by gibsramen over 2 years ago - 1 comment

#24 - Reading biom files in R causes an X to be added to column names that start with #

Issue - State: closed - Opened by nearinj over 2 years ago - 1 comment

#23 - Update Songbird rule output

Pull Request - State: closed - Opened by gibsramen over 2 years ago

#22 - Update Songbird output

Issue - State: closed - Opened by gibsramen over 2 years ago

#21 - Update to v0.2.0

Pull Request - State: closed - Opened by gibsramen over 2 years ago

#20 - Add EMPress plot

Pull Request - State: closed - Opened by gibsramen over 2 years ago

#19 - Update logging + PR curves

Pull Request - State: closed - Opened by gibsramen over 2 years ago

#18 - Add PRC

Pull Request - State: closed - Opened by gibsramen over 2 years ago

#17 - Update logging for R scripts

Pull Request - State: closed - Opened by gibsramen over 2 years ago

#16 - Update rules

Pull Request - State: closed - Opened by gibsramen over 2 years ago

#15 - Add corncob & update DAG

Pull Request - State: closed - Opened by gibsramen over 2 years ago

#14 - Update get_pctile_feats rule to only use specific tool output

Issue - State: closed - Opened by gibsramen over 2 years ago

#13 - Add metagenomeSeq

Pull Request - State: closed - Opened by gibsramen over 2 years ago

#12 - Use consistent colors for tools in visualizations

Issue - State: closed - Opened by gibsramen over 2 years ago

#11 - Add better logging

Issue - State: closed - Opened by gibsramen over 2 years ago - 1 comment

#10 - Add MaAsLin2

Pull Request - State: closed - Opened by gibsramen over 2 years ago

#9 - Add support for additional confounders

Pull Request - State: closed - Opened by gibsramen over 2 years ago

#8 - Add PR curve in addition to ROC

Issue - State: closed - Opened by gibsramen over 2 years ago

#7 - Add PCA regression

Pull Request - State: closed - Opened by gibsramen over 2 years ago

#5 - Modularize interactive webapp

Pull Request - State: closed - Opened by gibsramen over 2 years ago

#4 - Move PCA from interactive app to own rules

Issue - State: closed - Opened by gibsramen over 2 years ago

#3 - Add optional phylogenetic tree input + EMPress

Issue - State: closed - Opened by gibsramen over 2 years ago

#2 - Add GH actions

Pull Request - State: closed - Opened by gibsramen over 2 years ago