Ecosyste.ms: Issues

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GitHub / ggonnella/gfapy issues and pull requests

#31 - gfapy.error.NotFoundError: A link equivalent to ... does not exist

Issue - State: open - Opened by MrTomRod 3 months ago - 1 comment

#30 - Update integer.py to parse integers in exp notation

Pull Request - State: open - Opened by msgr0 8 months ago - 1 comment

#29 - Missing coverage information after merge_linear_paths()

Issue - State: open - Opened by jamiemcg over 1 year ago

#28 - Improve documentation on Methods to access segments, edges, etc. by id

Issue - State: open - Opened by nhansen over 1 year ago - 7 comments

#27 - unhashable type: 'SegmentEnd' with `is_cut_segment`

Issue - State: open - Opened by mir-cat about 2 years ago

#26 - Feature: converting graphs to GFA

Issue - State: open - Opened by aafshinfard over 2 years ago - 1 comment

#25 - Optimization: add ability to ignore sequences when loading a GFA file

Issue - State: open - Opened by fedarko over 2 years ago - 6 comments
Labels: enhancement

#24 - Setting 'or' tag in merge_linear_paths

Issue - State: open - Opened by W-L over 2 years ago - 1 comment

#23 - Taking very long to load GFA1 from file

Issue - State: closed - Opened by fawaz-dabbaghieh almost 3 years ago - 4 comments

#22 - 'edge_1+' is not a valid list of GFA1 segment names and orientations

Issue - State: closed - Opened by schorlton almost 3 years ago - 7 comments

#21 - Merging on linear paths errors

Issue - State: closed - Opened by AntoineHo over 3 years ago - 1 comment

#20 - Merging linear paths : computed sequence length and computed LN differ

Issue - State: closed - Opened by AntoineHo over 3 years ago - 2 comments

#19 - conversion between GFA and GFA2 leaves out path tags

Issue - State: closed - Opened by egoltsman over 3 years ago - 1 comment

#18 - Possible bug in captured_path.py

Issue - State: closed - Opened by egoltsman almost 4 years ago - 4 comments

#17 - Added support for Linux on power

Pull Request - State: closed - Opened by ujjwalsh about 4 years ago - 1 comment

#16 - python3 set.append not allowed

Issue - State: closed - Opened by egoltsman about 4 years ago - 1 comment

#15 - linear_path error

Issue - State: closed - Opened by egoltsman about 4 years ago - 3 comments

#14 - validating paths

Issue - State: closed - Opened by egoltsman over 4 years ago - 5 comments

#13 - gfapy.error.FormatError: Custom tags must be lower case

Issue - State: closed - Opened by Zethson over 4 years ago - 5 comments
Labels: bug

#12 - Installation issue on Ubuntu 20.04

Issue - State: closed - Opened by moldach over 4 years ago - 2 comments

#11 - Supporting rGFA

Issue - State: closed - Opened by ggonnella over 4 years ago - 13 comments
Labels: enhancement

#10 - Calling .complement() on GFA2 edges

Issue - State: closed - Opened by fedarko about 5 years ago - 3 comments

#9 - Compact the assembly graph [feature request]

Issue - State: closed - Opened by sjackman almost 6 years ago - 1 comment

#8 - Add bin/gfapy-renumber

Pull Request - State: closed - Opened by sjackman almost 6 years ago

#7 - Fill in the sequences in GFA from FASTA

Issue - State: closed - Opened by sjackman about 6 years ago - 8 comments

#6 - Fix typos

Pull Request - State: closed - Opened by jwilk about 7 years ago

#5 - gfa-convert: custom sl:i tag ought to be LN:i

Issue - State: closed - Opened by sjackman over 7 years ago - 5 comments

#4 - gfapy-convert: has no identifier Path conversion to GFA2 failed

Issue - State: closed - Opened by sjackman over 7 years ago - 2 comments

#3 - gfapy-validate: spurious warning (GFA 1)

Issue - State: closed - Opened by sjackman over 7 years ago - 2 comments

#2 - ImportError: cannot import name '_validate_gfa_field'

Issue - State: closed - Opened by sjackman over 7 years ago - 4 comments

#1 - Minimum Python version

Issue - State: closed - Opened by sjackman over 7 years ago - 2 comments