Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / ggPMXdevelopment/ggPMX issues and pull requests

#379 - Tynes science gh defaults use title sci notation

Pull Request - State: closed - Opened by mattfidler 7 months ago - 1 comment

#378 - Tynes science gh 373 cran package documentation requirement

Pull Request - State: closed - Opened by mattfidler 7 months ago

#377 - directory fixes for CRAN

Issue - State: closed - Opened by mattfidler 7 months ago

#376 - Bare theophylline controller creation call fails

Issue - State: closed - Opened by tynsci 8 months ago
Labels: bug

#375 - Gh defaults use title sci notation

Pull Request - State: closed - Opened by tynsci 8 months ago - 1 comment

#374 - Add _PACKAGE sentinel for package help topic generation

Pull Request - State: closed - Opened by tynsci 8 months ago - 1 comment

#373 - CRAN package requirement.

Issue - State: closed - Opened by mattfidler 11 months ago

#372 - No all plots using ggPMX and a Monolix project

Issue - State: closed - Opened by Nathalie06 11 months ago - 2 comments

#371 - Observations Ignored in Individual Plots

Issue - State: open - Opened by YangZhang11 11 months ago - 2 comments

#370 - 369 parameter table for monolix 2013r1

Pull Request - State: closed - Opened by mattfidler 11 months ago

#369 - Parameter table for Monolix 2013R1

Issue - State: closed - Opened by tmss1 12 months ago

#368 - CRAN update

Issue - State: closed - Opened by mattfidler about 1 year ago

#367 - 366 conditionally include nlmixr2

Pull Request - State: closed - Opened by mattfidler about 1 year ago - 1 comment

#366 - Conditionally include `nlmixr2`

Issue - State: closed - Opened by mattfidler about 1 year ago

#365 - Remove path prefix from sim-blq variable name

Pull Request - State: closed - Opened by tynsci about 1 year ago - 1 comment

#364 - Correct report generation to use custom template

Pull Request - State: closed - Opened by tynsci about 1 year ago - 4 comments

#363 - Switch on/off sci notation for tables

Issue - State: closed - Opened by mattfidler about 1 year ago

#362 - censoring defaults

Issue - State: open - Opened by mattfidler about 1 year ago - 1 comment

#361 - `use.title` = `FALSE`

Issue - State: closed - Opened by mattfidler about 1 year ago

#359 - Too much white space for figures

Issue - State: closed - Opened by mattfidler about 1 year ago - 1 comment

#358 - Remove captioner

Issue - State: closed - Opened by mattfidler about 1 year ago

#356 - Unknown error when creating controller

Issue - State: open - Opened by tmss1 about 1 year ago - 2 comments

#355 - 323 bug for nlmixr2 fits

Pull Request - State: closed - Opened by mattfidler about 1 year ago

#354 - Use `purr::map() + purr::exec()`

Issue - State: closed - Opened by mattfidler about 1 year ago

#352 - Change `select()` usage

Issue - State: closed - Opened by mattfidler about 1 year ago

#351 - Use `readr::read_table()`

Issue - State: closed - Opened by mattfidler about 1 year ago

#350 - `size` depreciated

Issue - State: closed - Opened by mattfidler about 1 year ago - 1 comment

#349 - Depreciate `aes_string`

Issue - State: closed - Opened by mattfidler about 1 year ago

#348 - Drop tibble import

Pull Request - State: closed - Opened by mattfidler about 1 year ago - 1 comment

#347 - Drop tibble as imports

Issue - State: closed - Opened by mattfidler about 1 year ago

#346 - Duplicate controller creation takes on properties of last created controller

Issue - State: closed - Opened by mattfidler about 1 year ago - 1 comment

#345 - Tynes science gh91 unit testing

Pull Request - State: closed - Opened by mattfidler about 1 year ago - 3 comments

#344 - Depreciation

Issue - State: closed - Opened by mattfidler about 1 year ago - 1 comment

#343 - Tynes science gh222 pmxgpar argument effective

Pull Request - State: closed - Opened by mattfidler over 1 year ago

#342 - Feature request: Plot regressor as covariates

Issue - State: open - Opened by tmss1 over 1 year ago - 3 comments

#341 - 'Adding figure numbers'

Pull Request - State: closed - Opened by tynsci over 1 year ago - 2 comments

#340 - pmx reader to handle multiple id-prefixed columns in predictions

Pull Request - State: closed - Opened by tynsci over 1 year ago

#339 - Add force for ggPMX

Pull Request - State: closed - Opened by mattfidler over 1 year ago

#338 - need to use force=TRUE

Issue - State: closed - Opened by mattfidler over 1 year ago - 1 comment

#337 - Added fix to select smallest id column; (fixes idnew workaround)

Pull Request - State: closed - Opened by mattfidler over 1 year ago - 1 comment

#336 - id can pick up multiple ids in `read_mlx_pred`

Issue - State: closed - Opened by mattfidler over 1 year ago

#335 - Strat facet arguments made consistent, test added and formatting

Pull Request - State: closed - Opened by tynsci over 1 year ago

#334 - Review Francois: Error when reading data containing more than one "id"-prefixed column in predictions

Issue - State: closed - Opened by tynsci over 1 year ago - 2 comments
Labels: bug, reproduced

#333 - Using facet_paginate from ggforce package on CRAN

Pull Request - State: closed - Opened by tynsci over 1 year ago

#331 - Review Irina: Add figure numbers

Issue - State: open - Opened by tynsci over 1 year ago - 1 comment
Labels: enhancement

#330 - Adding comment about ggplot2 syntax extensibility and customizability

Pull Request - State: closed - Opened by tynsci over 1 year ago

#329 - Log transformation warnings applied

Pull Request - State: closed - Opened by tynsci over 1 year ago

#328 - Parameter table updated

Pull Request - State: closed - Opened by tynsci over 1 year ago

#327 - Documentation updated

Pull Request - State: closed - Opened by tynsci over 1 year ago

#324 - Adding square plot logical parameter to pmx_plot_dv_pred

Pull Request - State: closed - Opened by tynsci over 1 year ago

#323 - Bug for nlmixr2 fits

Issue - State: closed - Opened by mattfidler over 1 year ago - 2 comments
Labels: bug

#322 - ggplot2 version check for ssize/linewidth added

Pull Request - State: closed - Opened by tynsci over 1 year ago - 1 comment

#320 - Adding test that density plot does not have empty lines

Pull Request - State: closed - Opened by tynsci over 1 year ago

#319 - Adding tests to achieve 90% code coverage goal

Pull Request - State: closed - Opened by tynsci over 1 year ago

#318 - Add pmx_shrink and check.shrink functions + tests

Pull Request - State: closed - Opened by tynsci over 1 year ago - 1 comment

#317 - Fix bloq parameter application to relevant plots

Pull Request - State: closed - Opened by tynsci over 1 year ago - 2 comments

#316 - Spline in plots with BLOQ data

Pull Request - State: closed - Opened by tynsci over 1 year ago - 1 comment

#315 - gh291 fix to make sure multiple aesthetic parameters can be used

Pull Request - State: closed - Opened by tynsci over 1 year ago - 1 comment

#314 - Adding test for levels filtering and fixing levels filtering logic

Pull Request - State: closed - Opened by tynsci over 1 year ago - 1 comment

#313 - Increasing font size of correlation label and making them red color

Pull Request - State: closed - Opened by tynsci over 1 year ago - 1 comment

#312 - Updating individual template of pmx report

Pull Request - State: closed - Opened by tynsci over 1 year ago - 1 comment

#311 - Use ggforce code from CRAN package

Issue - State: closed - Opened by tynsci over 1 year ago
Labels: enhancement

#310 - Passing pmx setting through

Pull Request - State: closed - Opened by tynsci over 1 year ago

#309 - Implementing parameter renaming format, output with tests, updates

Pull Request - State: closed - Opened by tynsci over 1 year ago

#308 - Making fun argument required part of shrink

Pull Request - State: closed - Opened by tynsci over 1 year ago

#307 - Test for dv_pred axes symmetrical range default

Pull Request - State: closed - Opened by tynsci over 1 year ago

#306 - Review Irina: strat.facet parameter inconsistent

Issue - State: open - Opened by tynsci over 1 year ago - 1 comment
Labels: default, documentation

#305 - Dropping NA panels when stratifying individual plot w test

Pull Request - State: closed - Opened by tynsci over 1 year ago - 1 comment

#304 - Adding documentation and test for custom axes VPC plot

Pull Request - State: closed - Opened by tynsci over 1 year ago - 1 comment

#303 - Making variance the default shrinkage function + adding tests

Pull Request - State: closed - Opened by tynsci over 1 year ago - 3 comments

#302 - Adding fix and test for pmxgpar argument propagation to plots

Pull Request - State: closed - Opened by tynsci over 1 year ago - 3 comments

#301 - Test Irina: Testing that BLoQ data are colored differently in non-(eba,eta)

Pull Request - State: closed - Opened by tynsci over 1 year ago - 2 comments

#299 - Test Tomas: Individual plots showing NA when stratified

Issue - State: open - Opened by tmss1 over 1 year ago - 2 comments
Labels: bug

#298 - VPC CI of lower percentile missing

Issue - State: open - Opened by tmss1 over 1 year ago - 4 comments

#297 - Individual plots missing data of some subjects

Issue - State: open - Opened by tmss1 over 1 year ago - 3 comments
Labels: bug

#294 - Review Tomas: Inconsistent controller behaviour with BLOQ data in plots

Issue - State: closed - Opened by tmss1 over 1 year ago - 2 comments

#292 - Choose parameters for EBE plots

Issue - State: closed - Opened by tmss1 over 1 year ago - 1 comment
Labels: enhancement

#289 - Controller error messages when adding a second endpoint

Issue - State: closed - Opened by tmss1 over 1 year ago - 1 comment
Labels: bug

#271 - check upcoming ggplot 3.4.0

Issue - State: closed - Opened by mattfidler over 1 year ago - 2 comments

#267 - Review Tomas: `pmx_plot_iwres_dens()` returns blank plot

Issue - State: closed - Opened by tmss1 almost 2 years ago - 4 comments

#266 - Skip on CRAN

Pull Request - State: closed - Opened by mattfidler almost 2 years ago

#256 - Unable to load custom template with ggPMX 1.2.8

Issue - State: open - Opened by biencan1 almost 2 years ago - 4 comments
Labels: bug

#255 - sim_blq read in correctly for Monolix 2019R2, 2020R1 and 2022R2 but not used in any of the plots

Issue - State: open - Opened by biencan1 almost 2 years ago - 8 comments
Labels: bug

#222 - Review Bruno: Ranges argument via pmxgpar to pmx_plot_vpc has no effect on plot

Issue - State: closed - Opened by tynsci about 2 years ago - 2 comments
Labels: bug

#203 - Review Irina: Add correlations in parameter table

Issue - State: open - Opened by baltcir1 over 2 years ago - 1 comment
Labels: enhancement

#199 - Update "individual" template of pmx_report

Issue - State: closed - Opened by baltcir1 over 2 years ago
Labels: default, documentation

#198 - Test Irina: pmx_plot_eta_conts: "corr = ..." label in figure is too large

Issue - State: closed - Opened by baltcir1 over 2 years ago - 1 comment
Labels: default

#197 - Review Irina: pmx_plot_dv_pred equal x and y axis by default

Issue - State: open - Opened by baltcir1 over 2 years ago - 2 comments
Labels: default

#157 - Setting Random Number Generator seed for binning reproducibility.

Pull Request - State: closed - Opened by tynesjo over 3 years ago - 5 comments

#149 - vpc_sim requires dv

Issue - State: closed - Opened by mattfidler over 3 years ago - 1 comment
Labels: documentation

#148 - Removing filtering out of 0-DV values as this may lead to inaccurate …

Pull Request - State: closed - Opened by tynesjo over 3 years ago

#131 - Remove horizontal line at 0 for the QQ plot of eta variables.

Pull Request - State: closed - Opened by tynesjo over 3 years ago

#123 - Definition of Standard Deviation/Variance is unclear in parameter table and shrinkage calculation and plots.

Issue - State: closed - Opened by sehamsick over 3 years ago - 2 comments
Labels: bug, enhancement

#101 - Consider creating a helper function for the pmx_box_eta_block shrink parameter

Issue - State: closed - Opened by tynesjo about 4 years ago - 1 comment
Labels: enhancement, question

#100 - Improve documentation of the shrink parameter going into pmx_plot_eta_box

Issue - State: closed - Opened by tynesjo about 4 years ago - 2 comments
Labels: enhancement, documentation