getzlab/canine issues and pull requests

#51 - Enable job shell variable expansion during delocalization

Issue - State: open - Opened by agraubert over 4 years ago
Labels: enhancement

#50 - orchestrator should attempt to run `delocalize.py` for jobs failed from node failures

Issue - State: closed - Opened by agraubert over 4 years ago - 1 comment
Labels: enhancement

#49 - Resubmission: Save output dataframe as HDF5, not Pickle

Pull Request - State: closed - Opened by julianhess over 4 years ago - 1 comment

#48 - Resubmission: Gcloud quality of life

Pull Request - State: closed - Opened by agraubert over 4 years ago - 1 comment

#47 - Dummy Backend hangs on linux VMs

Issue - State: closed - Opened by agraubert over 4 years ago - 1 comment
Labels: bug

#45 - Handle failures during `setup.sh`

Pull Request - State: closed - Opened by julianhess over 4 years ago - 1 comment

#43 - Add debug mode to `wait_for_jobs_to_finish`

Issue - State: closed - Opened by agraubert over 4 years ago
Labels: enhancement, ux

#42 - Use fallocate to enforce disk space

Issue - State: open - Opened by julianhess over 4 years ago - 1 comment
Labels: enhancement

#41 - Improved RequesterPays detection

Pull Request - State: closed - Opened by agraubert over 4 years ago - 1 comment

#37 - Record job output manifest

Pull Request - State: closed - Opened by agraubert over 4 years ago - 1 comment
Labels: Internal

#35 - Streamline localization

Pull Request - State: closed - Opened by agraubert over 4 years ago - 1 comment
Labels: Internal

#34 - Output df

Issue - State: closed - Opened by agraubert over 4 years ago
Labels: enhancement, Internal

#33 - Add DummySlurmBackend and unit tests

Pull Request - State: closed - Opened by agraubert over 4 years ago

#31 - Remove distinction between controller and worker fs environments

Issue - State: closed - Opened by agraubert over 4 years ago
Labels: enhancement, Internal

#29 - delocalization.py should create relative symlinks, if possible

Issue - State: closed - Opened by julianhess over 4 years ago - 1 comment

#26 - Add array input handling

Pull Request - State: closed - Opened by agraubert almost 5 years ago - 1 comment
Labels: enhancement, wontfix, wolf

#20 - Allow functions to be run on output DF columns …

Pull Request - State: closed - Opened by julianhess almost 5 years ago

#11 - Don't Manually set version string

Issue - State: closed - Opened by dheiman almost 5 years ago
Labels: Internal

Ecosyste.ms: Issues

GitHub / getzlab/canine issues and pull requests