geoschem/geos-chem issues and pull requests

#2205 - Fix uptake coefficients on stratospheric aerosol

Pull Request - State: closed - Opened by cdholmes 4 months ago - 4 comments
Labels: KPP / chem mechanisms, Strat WG, bugfix

#2204 - Likely bug in heterogeneous chemistry on stratospheric aerosol

Issue - State: closed - Opened by cdholmes 4 months ago - 11 comments
Labels: bug, KPP / chem mechanisms

#2204 - Likely bug in heterogeneous chemistry on stratospheric aerosol

Issue - State: open - Opened by cdholmes 4 months ago

#2203 - error about GEOS-Chem running

Issue - State: closed - Opened by yiz2023 4 months ago - 4 comments
Labels: category: Bug, topic: Diagnostics, topic: Runtime Error

#2202 - GEOS-Chem 14.3.0. Cannot get pointer to HEMCO field CH4_OIL.

Issue - State: closed - Opened by zion0210 4 months ago - 7 comments
Labels: category: Bug, Attn: Carbon gases WG, topic: Carbon Gases Simulations

#2201 - MERRA2 data missing in 20231202

Issue - State: closed - Opened by jjp1987 4 months ago - 5 comments
Labels: category: Bug, topic: Input Data

#2200 - Can KPP take in loss frequency from netcdf file?

Issue - State: closed - Opened by laura-hyesung-yang 4 months ago - 5 comments
Labels: category: Question, topic: Chemical Mechanisms

#2199 - Add GCHP diagnostics for GCHPctmEnv and FV3 gridded components

Pull Request - State: closed - Opened by lizziel 4 months ago - 3 comments
Labels: category: Feature Request, topic: GCHP, topic: Diagnostics

#2198 - Update volcano emissions through the end of 2022

Pull Request - State: closed - Opened by msulprizio 4 months ago - 2 comments
Labels: Emissions WG

#2197 - OFFLINE_SEASALT emissions file format issue in 11-12 2019

Issue - State: open - Opened by eamarais 4 months ago - 1 comment
Labels: category: Bug, topic: Input Data

#2197 - OFFLINE_SEASALT emissions file format issue in 11-12 2019

Issue - State: open - Opened by eamarais 4 months ago
Labels: bug, data sources / I-O

#2196 - ModelLev_Interpolate and MESSy error with NEI emissions

Issue - State: open - Opened by Lukemonr 4 months ago

#2195 - KPP convergence error after introducing new chemical mechanism in 0.25 x 0.3125 nested run

Issue - State: open - Opened by laura-hyesung-yang 4 months ago - 4 comments
Labels: category: Bug, topic: Chemical Mechanisms

#2194 - How to add land type diagnostic from HISTORY.rc in GEOS-Chem 14.2.3

Issue - State: closed - Opened by Jim1Young 4 months ago - 2 comments

#2193 - What are all the computations for which GEOS-Chem needs data about the surface properties?

Issue - State: open - Opened by garvitagarwal290 4 months ago - 1 comment
Labels: question, data sources / I-O

#2193 - What are all the computations for which GEOS-Chem needs data about the surface properties?

Issue - State: closed - Opened by garvitagarwal290 4 months ago - 5 comments
Labels: question, data sources / I-O

#2192 - GCHP crashing when turning on ProdLoss diagnostic collections for new tracers

Issue - State: open - Opened by amy1916 4 months ago - 21 comments
Labels: category: Bug, topic: GCHP, topic: Configuration Files, topic: Diagnostics

#2191 - [QUESTION] simulation of global PM2.5 concentration

Issue - State: closed - Opened by lyx035 4 months ago - 2 comments
Labels: question, diagnostics

#2190 - Artificial reduction of inj in GFAS within HEMCO and potential solutions

Issue - State: open - Opened by jinlx 4 months ago - 1 comment
Labels: feature, research / science problem

#2189 - HEMCO_diagnostic.nc - Question regaridng MOH biogenic emission

Issue - State: closed - Opened by laura-hyesung-yang 4 months ago - 4 comments
Labels: bug, HEMCO, diagnostics

#2188 - Missing Data for OFFLINE_BIOVOC again

Issue - State: closed - Opened by JFBrewer 4 months ago - 8 comments
Labels: category: Bug, topic: Input Data

#2187 - Update integration test scripts to input type of test and the name of the site (to reduce the number of input arguments)

Pull Request - State: open - Opened by yantosca 4 months ago - 8 comments
Labels: feature, testing / benchmarking, no-diff-to-benchmark

#2187 - Update integration & parallel test scripts to input the test type and reduce the number of input arguments

Pull Request - State: closed - Opened by yantosca 4 months ago - 16 comments
Labels: feature, testing / benchmarking, no-diff-to-benchmark

#2186 - Carbon model - when rate of change and advection turned off the number of molecules still changes?

Issue - State: closed - Opened by cschooling 4 months ago - 4 comments
Labels: category: Question, topic: Chemical Mechanisms

#2185 - Incorrect sign of exponents in several mercury reaction rates (HgY + Z + M -> HgYZ + M, where Y=Br, OH, Cl and Z=NO2, HO2, BrO, ClO)

Issue - State: closed - Opened by arifein 4 months ago - 5 comments
Labels: bug, specialty simulations, Hg-POPs WG

#2184 - GCC 14.3.0 Nested Simulation Timing Tests

Issue - State: closed - Opened by jgeddes85 4 months ago - 4 comments
Labels: category: Question, topic: Nested Grid Simulation, topic: Performance

#2183 - file missing in washu net

Issue - State: closed - Opened by zhifeng1310 4 months ago - 4 comments
Labels: category: Bug, topic: Input Data

#2182 - Add `#SBATCH -c 1` to Harvard Cannon GCHP run scripts and integration tests; Also allow scheduler `none` in integration tests

Pull Request - State: closed - Opened by yantosca 4 months ago - 3 comments
Labels: testing / benchmarking, no-diff-to-benchmark, bugfix

#2181 - State_Diag%OHreactivity

Issue - State: closed - Opened by laura-hyesung-yang 4 months ago - 2 comments
Labels: question, KPP / chem mechanisms

#2180 - State_Diag reading issue

Issue - State: closed - Opened by yutian8888 4 months ago - 6 comments
Labels: category: Bug, topic: Runtime Error

#2179 - File corruption of meteorological data.

Issue - State: closed - Opened by PowderL 4 months ago - 7 comments
Labels: category: Bug, topic: Input Data

#2178 - Rename "native" to "raw" in GCHP run directory creation scripts & templates

Pull Request - State: closed - Opened by yantosca 4 months ago - 10 comments
Labels: feature, GCHP, config-files / rundir, structural, no-diff-to-benchmark

#2177 - ObsPack bug fixes: (1) Use netCDF-F90 library routines (2) Read `obspack_id` variable into a character array

Pull Request - State: closed - Opened by yantosca 4 months ago - 3 comments
Labels: topic: Diagnostics, no-diff-to-benchmark, category: Bug Fix

#2176 - UCX bug fixes : (1) Use proper 4th index for WERADIUS array; (2) Get density of black carbon from the species database

Pull Request - State: closed - Opened by yantosca 4 months ago - 2 comments
Labels: KPP / chem mechanisms, bugfix

#2175 - GCHP fullchem simulation fails when switch on CMIP6_SFC_CH4

Issue - State: closed - Opened by hazel008 4 months ago - 6 comments
Labels: category: Bug, topic: GCHP, topic: Runtime Error

#2174 - GEOS-Chem .netcdf to .bpch conversion methods

Issue - State: closed - Opened by gouravsaha1995 4 months ago - 2 comments
Labels: question, diagnostics

#2173 - Adding ProdLoss Rate of OH to KPP

Issue - State: closed - Opened by laura-hyesung-yang 4 months ago - 1 comment
Labels: topic: Chemical Mechanisms, category: Debug Help

#2172 - Scaling factors for 3-d (xyz) emissions in HEMCO

Issue - State: closed - Opened by YanshunLi-washu 4 months ago - 8 comments
Labels: category: Question, help needed: Request Input From Community, topic: Input Data, topic: HEMCO Submodule

#2171 - Add CEDS 0.1 x 0.1 degree emissions

Pull Request - State: open - Opened by yantosca 4 months ago - 2 comments
Labels: category: Feature Request, help needed: Request Input From Community, topic: Input Data, topic: Configuration Files, deferred

#2170 - Obspack start+count exceeds dimension bound error

Issue - State: closed - Opened by alli-moon 4 months ago - 21 comments
Labels: category: Bug, topic: Diagnostics

#2169 - Black carbon radius and density in gravitational settling of stratospheric aerosols

Issue - State: closed - Opened by cbarker211 4 months ago - 4 comments
Labels: bug, KPP / chem mechanisms

#2168 - Update CH4 emissions from EDGARv7 to EDGARv8

Pull Request - State: closed - Opened by nicholasbalasus 4 months ago - 2 comments
Labels: category: Feature Request, topic: Input Data, Attn: Carbon gases WG

#2167 - GEOS-CHEM ERROR: Excessive fall velocity ERROR in UCX_mod

Issue - State: closed - Opened by alexzhang-psu 4 months ago - 2 comments
Labels: category: Bug, topic: Runtime Error

#2166 - Remove remaining binary punch diagnostics code

Pull Request - State: closed - Opened by yantosca 4 months ago - 3 comments
Labels: feature, structural

#2165 - Simulation Error, extdata found 1 unfulfilled imports

Issue - State: open - Opened by beiduqiu 4 months ago

#2164 - Adding ALK4 as SeaFlux species (Extension 101)

Issue - State: closed - Opened by laura-hyesung-yang 4 months ago - 3 comments
Labels: bug, HEMCO, config-files / rundir

#2163 - About the use of parallelism in GEOS-Chem

Issue - State: closed - Opened by yzjiaa 4 months ago - 2 comments
Labels: question, user environment

#2162 - Source of the CO2 restart files?

Issue - State: closed - Opened by garvitagarwal290 4 months ago - 5 comments
Labels: category: Question, topic: Restart Files

#2161 - what's the difference between GEOS-Chem full chemistry simulation and GEOS-Chem "tagged CO" simulation

Issue - State: closed - Opened by XunZhangNJU 5 months ago - 2 comments
Labels: question, specialty simulations

#2160 - Need MERRA 2 meteorology files for 47 vertical layers instead of 72

Issue - State: closed - Opened by gouravsaha1995 5 months ago - 4 comments
Labels: unsupported version

#2159 - Repeated 'Connection time out' while downloading data from geoschemdata.wustl.edu on an HPC

Issue - State: closed - Opened by garvitagarwal290 5 months ago - 1 comment
Labels: data sources / I-O

#2157 - Process contribution to concentration of PM2.5 in GEOS-Chem

Issue - State: closed - Opened by YanshunLi-washu 5 months ago - 13 comments
Labels: category: Question, topic: Diagnostics

#2156 - Is Version v10-01 available?

Issue - State: open - Opened by linguo4 5 months ago - 1 comment
Labels: question, unsupported version

#2156 - Is Version v10-01 available?

Issue - State: closed - Opened by linguo4 5 months ago - 2 comments
Labels: question, unsupported version

#2155 - Fixes to run GEOS-Chem 14.3 in GEOS

Pull Request - State: closed - Opened by lizziel 5 months ago - 3 comments
Labels: interface to external model, bugfix

#2155 - Fixes to run GEOS-Chem 14.3 in GEOS

Pull Request - State: closed - Opened by lizziel 5 months ago - 3 comments
Labels: interface to external model, bugfix

#2154 - Updates for GEOS-Chem 14.3 in CESM

Pull Request - State: closed - Opened by lizziel 5 months ago - 4 comments
Labels: topic: Structural Modifications, no-diff-to-benchmark, category: Interface to External Model, topic: CESM

#2153 - Run directory updates related to GEOS-IT

Pull Request - State: closed - Opened by lizziel 5 months ago - 5 comments
Labels: GCHP, config-files / rundir, no-diff-to-benchmark, bugfix

#2152 - Dryrun issue!

Issue - State: closed - Opened by saskia222 5 months ago - 3 comments
Labels: bug, dry-run

#2151 - Request for an explanation of vertical transport in GEOS-Chem.

Issue - State: closed - Opened by garvitagarwal290 5 months ago - 8 comments
Labels: question, need community input

#2151 - Request for an explanation of vertical transport in GEOS-Chem.

Issue - State: closed - Opened by garvitagarwal290 5 months ago - 6 comments
Labels: question, need community input

#2150 - Issues in getting dependencies on an institute HPC.

Issue - State: closed - Opened by garvitagarwal290 5 months ago - 2 comments
Labels: question, user environment

#2150 - Issues in getting dependencies on an institute HPC.

Issue - State: open - Opened by garvitagarwal290 5 months ago

#2149 - [FEATURE REQUEST] Consider activating additional diagnostics in benchmark simulations

Issue - State: open - Opened by msulprizio 5 months ago
Labels: feature, testing / benchmarking

#2148 - 14.1.1 compiles, but 14.2.3 does not

Issue - State: closed - Opened by Row-Bean 5 months ago - 7 comments
Labels: bug, build

#2147 - [FEATURE REQUEST] Require scheduler entry in integration tests

Issue - State: closed - Opened by lizziel 5 months ago - 4 comments
Labels: feature, testing / benchmarking

#2146 - Special species simulation

Issue - State: closed - Opened by ast222340 5 months ago - 1 comment
Labels: question

#2145 - Implement updated timezones file for HEMCO, that better accounts for daylight savings time worldwide

Pull Request - State: closed - Opened by yantosca 5 months ago - 8 comments
Labels: feature, data sources / I-O, HEMCO, config-files / rundir

#2144 - Restore dry deposition output in GCHP & GCClassic fullchem benchmark simulations

Pull Request - State: open - Opened by yantosca 5 months ago - 9 comments
Labels: category: Feature Request, topic: Diagnostics, topic: Benchmarking and Testing

#2143 - Activate all diagnostics in at least one of the GEOS-Chem integration tests

Issue - State: open - Opened by yantosca 5 months ago
Labels: feature, testing / benchmarking, no-diff-to-benchmark

#2142 - Reduce entries in GCHP HISTORY.rc

Issue - State: closed - Opened by lizziel 5 months ago - 3 comments
Labels: feature, GCHP, never stale, diagnostics, testing / benchmarking

#2141 - How to obtain CO2 emission files of resolution higher than 1x1?

Issue - State: closed - Opened by garvitagarwal290 5 months ago - 3 comments
Labels: data sources / I-O, specialty simulations, Carbon gases WG

#2140 - [FEATURE REQUEST] Change GCHP run directory terminology to use raw rather than native

Issue - State: closed - Opened by lizziel 5 months ago - 1 comment
Labels: feature, GCHP, config-files / rundir

#2139 - The DryDep collection is not activated for GCHP fullchem benchmarks

Issue - State: closed - Opened by yantosca 5 months ago - 6 comments
Labels: category: Bug, never stale, topic: Diagnostics, topic: Benchmarking and Testing

#2138 - Run scripts and environment for the Imperial College London HPC

Pull Request - State: closed - Opened by sdeastham 5 months ago - 1 comment
Labels: GCHP, config-files / rundir, no-diff-to-benchmark

#2137 - GEOS-Chem 14.3.0

Pull Request - State: closed - Opened by lizziel 5 months ago - 1 comment

#2136 - Add fixes for TOMAS simulations in GCHP

Pull Request - State: closed - Opened by msulprizio 5 months ago - 3 comments
Labels: GCHP, testing / benchmarking, no-diff-to-benchmark, specialty simulations, bugfix

#2135 - GCHP 14.3.0-rc.0 runs crashing when some diagnostic collections are turned on

Issue - State: closed - Opened by msulprizio 5 months ago - 3 comments
Labels: category: Bug, topic: GCHP, never stale, topic: Benchmarking and Testing

#2134 - Update run directory scripts to get certain restarts from 14.3.0 1-year benchmark output and boundary condition output

Pull Request - State: closed - Opened by yantosca 5 months ago - 2 comments
Labels: feature, config-files / rundir

#2133 - Missing input GEOS-FP met field in 0.125x0.15625 resolution

Issue - State: closed - Opened by xlwangg 5 months ago - 8 comments
Labels: category: Bug, topic: Input Data

#2132 - Can I get 3D budget (in fixed vertical altitude) instead of 2D budget?

Issue - State: closed - Opened by linguo4 5 months ago - 3 comments
Labels: question, stale, diagnostics

#2131 - Diagnostic for GammaN2O5

Issue - State: open - Opened by ktravis213 5 months ago
Labels: feature, KPP / chem mechanisms, diagnostics

#2130 - help with solving ncdfUtil bugs while compiling GEOS-Chem V10

Issue - State: closed - Opened by yixinguo0421 5 months ago - 3 comments
Labels: bug, build

#2129 - Question about the HEMCO folder

Issue - State: closed - Opened by Fearlessssssss 6 months ago - 2 comments
Labels: question, documentation

#2128 - A question about how to export species emission files in the same way as species concentration files

Issue - State: closed - Opened by CodeCatLZW 6 months ago - 4 comments
Labels: question, HEMCO, config-files / rundir

#2128 - A question about how to export species emission files in the same way as species concentration files

Issue - State: open - Opened by CodeCatLZW 6 months ago - 3 comments
Labels: question, HEMCO, config-files / rundir

#2127 - Add budget diagnostic option for fixed level vertical region

Pull Request - State: closed - Opened by lizziel 6 months ago - 5 comments
Labels: diagnostics, no-diff-to-benchmark

#2126 - Issue with aerosol pH in nested simulation

Issue - State: open - Opened by ktravis213 6 months ago - 1 comment
Labels: bug, diagnostics

#2126 - Issue with aerosol pH in nested simulation

Issue - State: closed - Opened by ktravis213 6 months ago - 3 comments
Labels: bug, stale, diagnostics

#2125 - EDGARv7 and EDGARv6_SF files are incompatible with GCHP (plus other files)

Issue - State: closed - Opened by yantosca 6 months ago - 6 comments
Labels: category: Bug, topic: GCHP, topic: Input Data, topic: Carbon Gases Simulations

#2124 - 14.1.1,Is the official restart file only for "global region"?

Issue - State: closed - Opened by Hugh-Su 6 months ago - 2 comments
Labels: question, restarts

#2123 - 14.1.1

Issue - State: closed - Opened by Hugh-Su 6 months ago
Labels: category: Question

#2122 - How to remove the contribution of isoprene from biogenic source and NO_x from fertilizer from soil in a simulation?

Issue - State: open - Opened by cespinosa 6 months ago - 3 comments
Labels: research / science problem, question, data sources / I-O, config-files / rundir, stale

#2115 - Need to update incorrect EDGARv7 entries in HEMCO_Config.rc and ExtData.rc for the carbon, CH4, and tagCH4 simulations

Issue - State: closed - Opened by yantosca 6 months ago - 5 comments
Labels: category: Bug, topic: HEMCO Submodule, topic: Configuration Files, topic: Emissions

GitHub / geoschem/geos-chem issues and pull requests