geoschem/gcpy issues and pull requests

#267 - [FEATURE REQUEST] Consolidate and rename regridding files and functions

Issue - State: open - Opened by lizziel over 1 year ago - 2 comments
Labels: feature, regridding

#266 - Fixed online regridding code (file_regrid.py) for restart-to-restart file regridding only

Pull Request - State: closed - Opened by yantosca over 1 year ago - 2 comments
Labels: regridding, bugfix

#265 - [BUG/ISSUE] Error generating mass table and radionuclide budget for the GCHP 1-year transport tracers benchmarks

Issue - State: closed - Opened by msulprizio over 1 year ago - 1 comment
Labels: category: Bug, topic: Benchmark Plots and Tables

#264 - Make benchmark configuration files consistent

Pull Request - State: closed - Opened by msulprizio over 1 year ago - 1 comment
Labels: feature, benchmark plots and tables

#263 - Abstract routines out of gcpy/plot.py into smaller modules within the gcpy/plot folder

Pull Request - State: closed - Opened by yantosca over 1 year ago - 1 comment
Labels: feature, colors / display, benchmark plots and tables

#262 - Install GCPy

Issue - State: closed - Opened by Aosrain over 1 year ago - 3 comments
Labels: question, environment

#261 - [FEATURE REQUEST] Split plot.py into smaller modules and move these into gcpy/plot

Issue - State: closed - Opened by yantosca over 1 year ago - 1 comment
Labels: feature, structural modification

#260 - Prevent subplots from overlapping in 6-panel plots; Prevent colorbar labels from overlapping

Pull Request - State: closed - Opened by yantosca over 1 year ago - 1 comment
Labels: colors / display, benchmark plots and tables, bugfix

#259 - [BUG/ISSUE] Issue with colorbars and axis labels in latest benchmark plots

Issue - State: closed - Opened by msulprizio over 1 year ago - 3 comments
Labels: bug, benchmark plots and tables

#258 - [QUESTION]Selection of interpolation method in ESMF_RegridWeightGen

Issue - State: closed - Opened by helpyuan over 1 year ago - 14 comments
Labels: question, environment, regridding

#257 - Update plot.py for more recent xarray; also allow dask arrays to be passed to single_panel, six_plot routines

Pull Request - State: closed - Opened by yantosca over 1 year ago - 1 comment
Labels: benchmark plots and tables, bugfix

#256 - Rename PassiveTracers to TransportTracers in run_1yr_tt_benchmark.py

Pull Request - State: closed - Opened by msulprizio over 1 year ago
Labels: bugfix

#255 - Peg xarray to version 2023.2.0 in the environment.yml file

Pull Request - State: closed - Opened by yantosca over 1 year ago - 1 comment
Labels: environment, bugfix

#254 - [BUG/ISSUE] Index error when creating 1-year benchmark plots for GCClassic vs GCHP

Issue - State: closed - Opened by msulprizio over 1 year ago - 4 comments
Labels: bug

#253 - Fixed broken regridding code in file_regrid.py; Updated GCPy regridding documentation

Pull Request - State: closed - Opened by yantosca over 1 year ago - 1 comment
Labels: bug, documentation, regridding

#252 - HEMCO formatting functions

Pull Request - State: closed - Opened by hannahnesser over 1 year ago - 4 comments
Labels: category: Feature Request, topic: Input Data, never stale, topic: Community Contributions

#251 - Update gcpy_env environment to install with MambaForge and to use latest package versions; Update scripts accordingly

Pull Request - State: closed - Opened by yantosca over 1 year ago - 1 comment
Labels: feature, environment, benchmark plots and tables

#250 - Rearrange folders according to Python packaging best practices

Pull Request - State: closed - Opened by yantosca over 1 year ago - 5 comments
Labels: feature, structural modification

#249 - Reorder directories to better conform to Python package standards

Issue - State: closed - Opened by yantosca over 1 year ago - 2 comments
Labels: feature, structural modification

#248 - Now use a consistent width for columns in emissions tables and mass table output

Pull Request - State: closed - Opened by yantosca over 1 year ago - 2 comments
Labels: benchmark plots and tables, bugfix

#247 - [FEATURE REQUEST] Further update mass tables to Increase decimal places in the difference column

Issue - State: closed - Opened by msulprizio over 1 year ago - 2 comments
Labels: benchmark plots and tables

#246 - Now allow specification of the number of cores for benchmark plotting jobs

Pull Request - State: closed - Opened by yantosca over 1 year ago - 3 comments
Labels: feature, benchmark plots and tables

#245 - [FEATURE REQUEST] Move gcpy/benchmark.py to the benchmark/ folder

Issue - State: closed - Opened by yantosca over 1 year ago - 4 comments
Labels: feature, structural modification

#244 - [FEATURE REQUEST] Add tool for quickly obtaining I,J indices when given lat,lon values

Issue - State: closed - Opened by msulprizio over 1 year ago - 4 comments
Labels: feature, never stale, utilities

#243 - Add fixes for 14.2.0 benchmarking

Pull Request - State: closed - Opened by msulprizio over 1 year ago
Labels: benchmark plots and tables

#242 - Feature request: Mass-conserving vertical regridding function

Issue - State: open - Opened by yantosca over 1 year ago - 4 comments
Labels: category: Feature Request, never stale, topic: Regridding, topic: Community Contributions

#240 - Fix issue where wrong GCHP grid boxes were being looked up in models vs. obs plots

Pull Request - State: closed - Opened by yantosca over 1 year ago
Labels: benchmark plots and tables, bugfix

#239 - GCGridObj tools for cubed-sphere grids

Pull Request - State: closed - Opened by lizziel over 1 year ago
Labels: cubed-sphere, feature

#238 - Fix formatting of mass & emission tables; add mass table option to 1-year TransportTracers benchmarks

Pull Request - State: closed - Opened by yantosca over 1 year ago
Labels: feature, benchmark plots and tables

#237 - [FEATURE REQUEST] Use scientific notation in global mass tables for extremely large or small values

Issue - State: closed - Opened by msulprizio over 1 year ago - 2 comments
Labels: feature, benchmark plots and tables

#236 - Arrange models vs. observations plots from north to south by site latitude

Pull Request - State: closed - Opened by yantosca over 1 year ago - 1 comment
Labels: feature, benchmark plots and tables

#235 - Add lumped furans to emission_species.yml and benchmark_categories.yml

Pull Request - State: closed - Opened by msulprizio over 1 year ago

#234 - Add capability to plot GEOS-Chem Classic and/or GCHP data vs. O3 model observations

Pull Request - State: closed - Opened by yantosca over 1 year ago
Labels: feature, benchmark plots and tables

#233 - Bump scipy from 1.7.0 to 1.10.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#232 - Bump pypdf2 from 1.26.0 to 1.27.9

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#231 - [BUG/ISSUE] OH metrics table lists wrong Ref and Dev

Issue - State: closed - Opened by msulprizio over 1 year ago - 2 comments
Labels: bug, benchmark plots and tables

#229 - [QUESTION] GCHP restart file strechted grid regridding using gcpy.file_regrid with ValueError

Issue - State: closed - Opened by yuangchen6 over 1 year ago - 1 comment
Labels: category: Question, topic: Stretched Grid

#228 - [FEATURE REQUEST] Use all start/end dates in all benchmark yml files

Issue - State: open - Opened by lizziel over 1 year ago - 2 comments
Labels: feature, never stale, benchmark plots and tables

#227 - Shorten the filename of the benchmark operations budget table

Pull Request - State: closed - Opened by yantosca over 1 year ago - 2 comments
Labels: benchmark plots and tables

#226 - Remove gcpy_test YAML key from benchmark config files

Pull Request - State: closed - Opened by yantosca over 1 year ago
Labels: benchmark plots and tables, bugfix

#225 - Update species database and benchmark categories for TransportTracer changes in GEOS-Chem 14.2.0

Pull Request - State: closed - Opened by msulprizio over 1 year ago
Labels: benchmark plots and tables

#224 - Bug fixes in transport tracer benchmark code

Pull Request - State: closed - Opened by lizziel over 1 year ago - 1 comment
Labels: benchmark plots and tables, bugfix

#223 - Feature/benchmark cloud plotting templates

Pull Request - State: closed - Opened by laestrada over 1 year ago - 1 comment
Labels: feature

#222 - Remove references to gcpy_test and gchp_is_pre_13_1 from benchmarking routines and config files

Pull Request - State: closed - Opened by yantosca over 1 year ago
Labels: feature, benchmark plots and tables

#221 - Bump requests from 2.26.0 to 2.31.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#220 - [FEATURE REQUEST] Remove test data option from benchmarking code

Issue - State: closed - Opened by lizziel almost 2 years ago - 5 comments
Labels: feature

#219 - Difficulty converting .bpch to netcdf format using GCPy library

Issue - State: closed - Opened by gouravsaha1995 almost 2 years ago - 6 comments
Labels: question, stale

#218 - [Feature Request] Reduce length and remove space from budget operations table name

Issue - State: closed - Opened by lizziel almost 2 years ago - 3 comments
Labels: bug, benchmark plots and tables

#217 - [BUG/ISSUE] Budget operations table not working for GCHP data sets

Issue - State: open - Opened by lizziel almost 2 years ago - 4 comments
Labels: bug, never stale, benchmark plots and tables

#216 - Optional mass accumulation table in 1-month benchmark

Pull Request - State: closed - Opened by lizziel almost 2 years ago
Labels: feature

#215 - [QUESTION] Creating difference maps for total HgII

Issue - State: closed - Opened by TylerElgiar almost 2 years ago - 3 comments
Labels: question, benchmark plots and tables, need community input

#214 - [FEATURE REQUEST] Include species delta mass from restart files in full column budget tables

Issue - State: closed - Opened by lizziel almost 2 years ago - 3 comments
Labels: feature

#213 - Allow for other benchmark types for GCHP plotting as well

Pull Request - State: closed - Opened by msulprizio almost 2 years ago

#212 - Update run_benchmark.py to allow for other benchmark types

Pull Request - State: closed - Opened by msulprizio almost 2 years ago - 2 comments
Labels: feature, benchmark plots and tables

#211 - [FEATURE REQUEST] Add comparison plots for other diagnostic collections

Issue - State: open - Opened by msulprizio almost 2 years ago - 2 comments
Labels: category: Feature Request, never stale, topic: Benchmark Plots and Tables

#210 - Using Convert BPCH to NetCDF Example Script

Issue - State: closed - Opened by lcicone almost 2 years ago - 3 comments
Labels: bug, stale

#209 - Simplify Github issue and pull request templates

Pull Request - State: closed - Opened by msulprizio almost 2 years ago
Labels: documentation

#208 - Add C2H2 and C2H4 to emissions_species.yml

Pull Request - State: closed - Opened by msulprizio almost 2 years ago
Labels: benchmark plots and tables, bugfix

#207 - [BUG/ISSUE] Restart regridding code assumes full chemistry restart files

Issue - State: closed - Opened by lizziel almost 2 years ago - 3 comments
Labels: bug, stale

#206 - Add stretching params to example regridding

Pull Request - State: closed - Opened by kilicomu almost 2 years ago
Labels: documentation

#205 - Feature/update regridding docs

Pull Request - State: closed - Opened by kilicomu almost 2 years ago - 2 comments

#204 - Additional cleanup of gcpy routines

Pull Request - State: closed - Opened by yantosca about 2 years ago - 3 comments
Labels: feature, structural modification

#203 - [QUESTION]

Issue - State: closed - Opened by TylerElgiar about 2 years ago - 2 comments
Labels: question

#202 - [BUG/ISSUE] Packages not found when creating env with latest conda version

Issue - State: closed - Opened by lizziel about 2 years ago - 13 comments
Labels: bug, environment

#201 - [BUG/ISSUE] jupyterlab installation causes GCPy to break

Issue - State: closed - Opened by hmhorow about 2 years ago - 5 comments
Labels: bug, environment, stale

#200 - Update benchmark table output to better show which diagnostics have Ref = Dev

Pull Request - State: closed - Opened by yantosca about 2 years ago - 18 comments
Labels: feature, benchmark plots and tables

#199 - [FEATURE REQUEST] Update benchmark table output to make it easier to determine if Ref & Dev are identical

Issue - State: closed - Opened by yantosca about 2 years ago - 1 comment
Labels: feature, benchmark plots and tables

#198 - [Feature]Add bash script to simplify file regrid

Pull Request - State: closed - Opened by Jourdan-He about 2 years ago - 7 comments
Labels: feature

#197 - [QUESTION]

Issue - State: closed - Opened by liwenjia12 about 2 years ago
Labels: question

#196 - [QUESTION] ESMF module not found error

Issue - State: closed - Opened by liwenjia12 about 2 years ago - 5 comments
Labels: question

#195 - Creating a .txt file using GCPy

Issue - State: closed - Opened by TylerElgiar about 2 years ago - 3 comments
Labels: question

#194 - Question about GCPY functions

Issue - State: closed - Opened by TylerElgiar about 2 years ago - 3 comments

#193 - [BUG/ISSUE] Using GCPy file_regrid on GCHP restart file produces several output files

Issue - State: closed - Opened by Twize about 2 years ago - 9 comments
Labels: bug

#192 - Fix bug in GCHP transport tracer budget table

Pull Request - State: closed - Opened by lizziel about 2 years ago
Labels: benchmark plots and tables, bugfix

#191 - [BUG/ISSUE] Colorbar issue in stratospheric difference dynamic range plots

Issue - State: open - Opened by msulprizio about 2 years ago - 2 comments
Labels: bug, never stale, colors / display

#190 - Feature/improved file regrid

Pull Request - State: closed - Opened by kilicomu about 2 years ago - 7 comments

#189 - GCPy question

Issue - State: closed - Opened by TylerElgiar about 2 years ago - 2 comments
Labels: question

#188 - [FEATURE REQUEST] Replace calls to yaml.load with util.read_config_file

Issue - State: closed - Opened by msulprizio about 2 years ago
Labels: feature

#187 - Update SpeciesConc variable name to SpeciesConcVV for consistency with GEOS-Chem 14.1.0 updates

Pull Request - State: closed - Opened by msulprizio about 2 years ago
Labels: benchmark plots and tables

#186 - Add capability to generate CH4 benchmark output

Pull Request - State: closed - Opened by msulprizio about 2 years ago
Labels: feature, benchmark plots and tables

#185 - [BUG/ISSUE] Filp vertical dimention for the calculation of GCHP transport tracer budget in gcpy?

Issue - State: closed - Opened by 1Dandan about 2 years ago - 4 comments
Labels: bug

#184 - [BUG/ISSUE] Regrid(filename) requires PIO and does not work if ESMF has not been built with MPI support

Issue - State: closed - Opened by SadiaToma about 2 years ago - 6 comments
Labels: bug, environment, stale

#183 - how to use grid argument in gcpy.plot.single_panel()?

Issue - State: closed - Opened by Gracedyg over 2 years ago - 3 comments
Labels: question, stale

#182 - Bump numpy from 1.21.1 to 1.22.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#181 - Bump joblib from 1.0.1 to 1.2.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#180 - Bump pypdf2 from 1.26.0 to 1.27.5

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#179 - [FEATURE REQUEST] Add switch to quickly disable parallelization in gcpy

Issue - State: closed - Opened by msulprizio over 2 years ago - 4 comments
Labels: feature, structural modification

#178 - [FEATURE REQUEST] GCC vs GCHP diff-of-diffs in transport tracer simulation

Issue - State: open - Opened by lizziel over 2 years ago - 1 comment
Labels: feature, never stale, benchmark plots and tables

#177 - [BUG/ISSUE] Error generating mass conservation table for GCHP 14.0.0 1-year TransportTracer benchmark

Issue - State: closed - Opened by msulprizio over 2 years ago - 2 comments
Labels: bug, stale

#176 - [BUG/ISSUE] Global mass tables for GCHP 14.0.0 1-year benchmarks are returning zeroes

Issue - State: closed - Opened by msulprizio over 2 years ago - 4 comments
Labels: bug, stale, benchmark plots and tables

#175 - [FEATURE REQUEST] Update GCPy documentation for 1.3.0 (add info about new updates)

Issue - State: closed - Opened by yantosca over 2 years ago - 1 comment
Labels: feature, documentation

#174 - [BUG/ISSUE] 1-year benchmarking scripts eventually run out of memory?

Issue - State: closed - Opened by yantosca over 2 years ago - 9 comments
Labels: bug, never stale, benchmark plots and tables

#173 - [QUESTION] How to compute O3 budget for long-term simulation?

Issue - State: closed - Opened by mtsivlidou over 2 years ago - 6 comments
Labels: question, stale

#172 - [FEATURE REQUEST] Move configuration files for cloud benchmarking (and rundirs) from gc-cloud-benchmarks to GCPy and GEOS-Chem

Issue - State: closed - Opened by yantosca over 2 years ago - 1 comment
Labels: feature, benchmark plots and tables

GitHub / geoschem/gcpy issues and pull requests