geoschem/gcpy issues and pull requests

#349 - geoschem-gcpy 1.6.0 is not yet available on conda-forge

Issue - State: open - Opened by yantosca 20 days ago
Labels: category: Bug, topic: Installation

#348 - Bump jinja2 to 3.1.5 as suggested by Dependabot

Pull Request - State: closed - Opened by yantosca about 1 month ago
Labels: topic: Structural Modifications, category: Bug Fix

#347 - Fix type errors in calc_rectilinear_lon_edge and calc_rectilinear_lat_edge in grid.py

Pull Request - State: closed - Opened by yantosca about 1 month ago
Labels: category: Bug Fix, topic: Utilities

#346 - Add scripts to plot vertical profiles from the KPP-Standalone box model

Pull Request - State: closed - Opened by yantosca 2 months ago - 2 comments
Labels: category: Feature Request, topic: Utilities

#345 - Fix incorrect species classification in benchmark_categories.yml

Pull Request - State: closed - Opened by yantosca 3 months ago
Labels: topic: Benchmark Plots and Tables, category: Bug Fix

#344 - Fix computation of dynamic ratio colorbar min/max values in six_plot.py

Pull Request - State: closed - Opened by yantosca 4 months ago
Labels: topic: Benchmark Plots and Tables, category: Bug Fix

#343 - Use ALK6 species name for >= C6 alkanes instead of ALK7

Pull Request - State: closed - Opened by msulprizio 5 months ago
Labels: topic: Benchmark Plots and Tables, category: Bug Fix

#342 - Hotfix: Restore stale workflow functionality

Pull Request - State: closed - Opened by msulprizio 5 months ago - 1 comment
Labels: category: Bug Fix

#341 - Fix missing headers in aerosol table

Pull Request - State: closed - Opened by yuanjianz 5 months ago

#340 - Replace whitespace in Ref and Dev version labels in benchmarking code

Pull Request - State: closed - Opened by yantosca 5 months ago
Labels: topic: Benchmark Plots and Tables, category: Bug Fix

#339 - Remove the default gcpy/benchmark/modules/species_database.yml file

Pull Request - State: closed - Opened by yantosca 5 months ago
Labels: category: Feature Request, topic: Benchmark Plots and Tables

#339 - Remove the default gcpy/benchmark/modules/species_database.yml file

Pull Request - State: closed - Opened by yantosca 5 months ago
Labels: category: Feature Request, topic: Benchmark Plots and Tables

#338 - Added example script to validate GEOS-Chem photolysis reactions

Pull Request - State: closed - Opened by yantosca 5 months ago - 5 comments
Labels: category: Feature Request, topic: Example Scripts

#337 - Add benchmark script to create species changes tables for GEOS-Chem wiki

Pull Request - State: closed - Opened by yantosca 5 months ago - 1 comment
Labels: category: Feature Request, topic: Benchmark Plots and Tables

#336 - Add the DryDep collection to the benchmark summary table, and DryDepVel plots to 1-mon cloud benchmarks

Pull Request - State: closed - Opened by yantosca 6 months ago
Labels: category: Feature Request, topic: Benchmark Plots and Tables

#335 - Add script for scraping stats from GCClassic cloud benchmarks

Pull Request - State: closed - Opened by yantosca 6 months ago - 2 comments
Labels: category: Feature Request, topic: Benchmark Plots and Tables

#334 - Add `make_hemco_sa_spec.py` example script

Pull Request - State: closed - Opened by yantosca 6 months ago
Labels: category: Feature Request, topic: Example Scripts

#333 - Remove gcpy/benchmark/modules/species_database.yml

Issue - State: closed - Opened by yantosca 6 months ago - 1 comment
Labels: category: Feature Request, topic: Benchmark Plots and Tables, topic: Structural Modifications

#333 - Remove gcpy/benchmark/modules/species_database.yml

Issue - State: open - Opened by yantosca 6 months ago
Labels: category: Feature Request, topic: Benchmark Plots and Tables, topic: Structural Modifications

#332 - Now flag GEOS-Chem Classic/GCHP timers that differ by more than 10% in the benchmark timing tables

Pull Request - State: closed - Opened by yantosca 6 months ago - 4 comments
Labels: topic: Benchmark Plots and Tables, category: Bug Fix

#331 - Update benchmark YAML files with new species for GEOS-Chem 14.5.0

Pull Request - State: closed - Opened by yantosca 7 months ago - 5 comments
Labels: category: Feature Request, topic: Benchmark Plots and Tables

#330 - Zonal mean plots show striping when constant values everwhere

Issue - State: closed - Opened by lizziel 8 months ago - 5 comments
Labels: category: Bug, never stale, topic: Colors and Display

#329 - Update package versions used in the GCPy environment; Also update GitHub actions to avoid deprecation warnings

Pull Request - State: closed - Opened by yantosca 9 months ago - 2 comments
Labels: topic: User Environment, category: Bug Fix

#328 - Update mamba/conda environment to use Python 3.12 and xesmf 0.8.5 to allow installtion via PyPi

Issue - State: closed - Opened by yantosca 9 months ago - 3 comments
Labels: category: Feature Request, topic: Dependencies

#327 - Now use comma-separated list for `exempt-issue-labels` YAML tag in `stale.yml`

Pull Request - State: closed - Opened by yantosca 9 months ago
Labels: category: Bug Fix, topic: GitHub Actions

#326 - GCPy installation from PyPI (via Pip) does not work due to not finding xesmf version 0.5.1

Issue - State: closed - Opened by yantosca 9 months ago - 2 comments
Labels: category: Bug, topic: User Environment, never stale

#325 - Combine Ref and Dev output in the TransportTracers budget table

Issue - State: open - Opened by yantosca 9 months ago
Labels: category: Feature Request, topic: Benchmark Plots and Tables

#324 - Bump requests from 2.31.0 to 2.32.2 in /docs/environment_files

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: topic: Dependencies

#323 - Update Github issue templates to use issue forms

Pull Request - State: closed - Opened by msulprizio 9 months ago
Labels: category: Feature Request, never stale, topic: GitHub

#322 - Documentation updates for GCPy 1.5.0

Issue - State: closed - Opened by yantosca 9 months ago - 1 comment
Labels: TODO: Documentation

#321 - Bump requests from 2.31.0 to 2.32.0

Pull Request - State: open - Opened by dependabot[bot] 9 months ago
Labels: topic: Dependencies

#321 - Bump requests from 2.31.0 to 2.32.0

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: topic: Dependencies

#321 - Bump requests from 2.31.0 to 2.32.0

Pull Request - State: open - Opened by dependabot[bot] 9 months ago
Labels: topic: Dependencies

#320 - Add HCl to emissions_species.yml for GEOS-Chem 14.4.0

Pull Request - State: closed - Opened by msulprizio 10 months ago
Labels: category: Feature Request, topic: Benchmark Plots and Tables

#319 - Add benchmark scripts to scrape timing information from log files

Pull Request - State: closed - Opened by yantosca 10 months ago - 2 comments
Labels: category: Feature Request, topic: Benchmark Plots and Tables

#318 - RnPbBe budget table benchmark code assumes initial restart is run resolution

Issue - State: open - Opened by lizziel 10 months ago - 2 comments
Labels: category: Bug, never stale, topic: Benchmark Plots and Tables

#317 - Add example script to create mask files

Pull Request - State: closed - Opened by yantosca 10 months ago
Labels: category: Feature Request, topic: Example Scripts

#316 - Replace whitespace with underscores in benchmark plot/table version labels and file names

Issue - State: closed - Opened by yantosca 10 months ago - 2 comments
Labels: category: Feature Request, topic: Benchmark Plots and Tables

#315 - Replace stalebot with "stale" GitHub action

Pull Request - State: closed - Opened by yantosca 10 months ago
Labels: category: Bug Fix, topic: GitHub

#314 - GCPy not properly recognizing 0.125x0.15625 lat-lon grid

Issue - State: open - Opened by msulprizio 10 months ago - 10 comments
Labels: category: Bug, never stale, topic: Regridding

#313 - Can't generate zonal differences for global vs nested model output

Issue - State: open - Opened by msulprizio 10 months ago - 5 comments
Labels: category: Bug, never stale, topic: Benchmark Plots and Tables, topic: Regridding

#312 - Feature request: Add a script to scrape timing info from benchmark simulation log files

Issue - State: closed - Opened by yantosca 10 months ago - 4 comments
Labels: category: Feature Request, topic: Benchmark Plots and Tables, help needed: Request Input from Community

#311 - Fix issues in cubed-sphere regridding

Pull Request - State: closed - Opened by yuanjianz 11 months ago
Labels: topic: Cubed-Sphere Grid, topic: Regridding, category: Bug Fix

#310 - Bugs about automatic regridding for cube-sphere when plotting

Issue - State: closed - Opened by yuanjianz 11 months ago - 5 comments
Labels: category: Bug, topic: Benchmark Plots and Tables, topic: Regridding

#309 - Update mass conservation tables to include Ref & Dev in the same file

Pull Request - State: closed - Opened by yantosca 11 months ago - 22 comments
Labels: category: Feature Request, topic: Benchmark Plots and Tables

#309 - Update mass conservation tables to include Ref & Dev in the same file

Pull Request - State: open - Opened by yantosca 11 months ago - 16 comments
Labels: category: Feature Request, topic: Benchmark Plots and Tables

#309 - Update mass conservation tables to include Ref & Dev in the same file

Pull Request - State: closed - Opened by yantosca 11 months ago - 22 comments
Labels: category: Feature Request, topic: Benchmark Plots and Tables

#308 - Combine Ref and Dev in the same file for TransportTracers mass conservation tables

Issue - State: closed - Opened by yantosca 12 months ago - 1 comment
Labels: category: Feature Request, topic: Benchmark Plots and Tables

#307 - Added missing options to 1yr_ch4_benchmark.yml config file

Pull Request - State: closed - Opened by msulprizio 12 months ago
Labels: benchmark plots and tables, bugfix

#306 - Feature request: Add benchmark results paths and other related info to the the `config` object

Issue - State: open - Opened by yantosca 12 months ago
Labels: feature, benchmark plots and tables

#305 - Move remaining benchmark-related code out of gcpy and into gcpy/benchmark/modules folder (plus other improvements)

Pull Request - State: closed - Opened by yantosca about 1 year ago
Labels: feature, benchmark plots and tables, structural modification

#304 - Add fixed level diagnostic to operations budget table

Pull Request - State: closed - Opened by lizziel about 1 year ago
Labels: feature, benchmark plots and tables

#303 - [FEATURE REQUEST] Transport Tracers benchmark for less than one year

Issue - State: open - Opened by lizziel about 1 year ago - 2 comments
Labels: feature, benchmark plots and tables

#302 - [FEATURE REQUEST] Clean up start/end time usages in benchmark scripts

Issue - State: open - Opened by lizziel about 1 year ago - 1 comment
Labels: feature, never stale, benchmark plots and tables

#301 - Bug fix for operations budget name in transport tracer benchmark run script

Pull Request - State: closed - Opened by lizziel about 1 year ago
Labels: bug, benchmark plots and tables

#300 - Fix bugs in GCC vs GCHP transport tracer benchmark mass tables

Pull Request - State: closed - Opened by lizziel about 1 year ago
Labels: bug, benchmark plots and tables

#299 - pip install geoschem-gcpy==1.4.2 fails with error due to awscli version

Issue - State: closed - Opened by yantosca about 1 year ago - 2 comments
Labels: bug, environment

#298 - Fix bugs in 1-yr benchmarks for different GCHP grid resolutions

Pull Request - State: closed - Opened by lizziel about 1 year ago - 2 comments
Labels: bug, benchmark plots and tables

#297 - file_regrid.py now uses `DELP_DRY` for delta-dry pressure variable name when creating GCHP files

Pull Request - State: closed - Opened by yantosca about 1 year ago - 1 comment
Labels: benchmark plots and tables, regridding, bugfix

#296 - file_regrid.py creates GCHP restart files with variable name `DELPDRY` instead of `DELP_DRY`

Issue - State: closed - Opened by yantosca about 1 year ago - 1 comment
Labels: bug, benchmark plots and tables, regridding

#295 - Split python packages needed for RTD documentation builds out of the GCPy conda environment and into a separate environment; remove awscli

Pull Request - State: closed - Opened by yantosca about 1 year ago - 1 comment
Labels: feature, environment, documentation

#294 - Add a GitHub action to auto-push GCPy releases directly to PyPi

Pull Request - State: closed - Opened by yantosca about 1 year ago
Labels: feature, environment, structural modification, github actions

#293 - Bump pypdf from 3.16.1 to 3.17.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: environment, structural modification, dependencies, bugfix

#293 - Bump pypdf from 3.16.1 to 3.17.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: environment, structural modification, dependencies, bugfix

#292 - Bump jinja2 from 3.0.3 to 3.1.3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 3 comments
Labels: dependencies

#292 - Bump jinja2 from 3.0.3 to 3.1.3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 3 comments
Labels: dependencies

#291 - Bump pip from 23.2.1 to 23.3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: environment, dependencies

#291 - Bump pip from 23.2.1 to 23.3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: environment, dependencies

#290 - Make GCPy a conventional Python package

Issue - State: closed - Opened by sdeastham about 1 year ago - 7 comments
Labels: feature, environment, github actions

#290 - Make GCPy a conventional Python package

Issue - State: open - Opened by sdeastham about 1 year ago - 5 comments
Labels: feature, environment, github actions

#289 - Use pegged version numbers for the GCPy environment; Also add testing environment without pegged versions; Updated GitHub actions

Pull Request - State: closed - Opened by yantosca about 1 year ago
Labels: environment, bugfix

#288 - [FEATURE REQUEST] Transport tracer benchmark improvements

Issue - State: open - Opened by lizziel about 1 year ago - 2 comments
Labels: category: Feature Request, topic: Benchmark Plots and Tables

#288 - [FEATURE REQUEST] Transport tracer benchmark improvements

Issue - State: open - Opened by lizziel about 1 year ago - 2 comments
Labels: category: Feature Request, topic: Benchmark Plots and Tables

#287 - Fix dictionary key error when benchmark plots are generated sequentially

Pull Request - State: closed - Opened by yantosca about 1 year ago - 1 comment
Labels: benchmark plots and tables, bugfix

#287 - Fix dictionary key error when benchmark plots are generated sequentially

Pull Request - State: open - Opened by yantosca about 1 year ago
Labels: benchmark plots and tables, bugfix

#286 - Add GitHub action to build GCPy environment and test installation

Pull Request - State: closed - Opened by yantosca about 1 year ago - 1 comment
Labels: environment, structural modification, bugfix

#286 - Add GitHub action to build GCPy environment and test installation

Pull Request - State: closed - Opened by yantosca about 1 year ago - 1 comment
Labels: environment, structural modification, bugfix

#285 - Plot parallelization off failing in GCPy 1.4.1

Issue - State: closed - Opened by lizziel about 1 year ago - 4 comments
Labels: bug, benchmark plots and tables

#285 - Plot parallelization off failing in GCPy 1.4.1

Issue - State: closed - Opened by lizziel about 1 year ago - 4 comments
Labels: bug, benchmark plots and tables

#284 - Problems creating virtual environment compatible with GCPy 1.4.1

Issue - State: closed - Opened by lizziel about 1 year ago - 1 comment
Labels: bug, dependencies, github actions

#284 - Problems creating virtual environment compatible with GCPy 1.4.1

Issue - State: closed - Opened by lizziel about 1 year ago - 1 comment
Labels: category: Bug, topic: User Environment, topic: Dependencies

#283 - Implement several minor bug fixes (matplotlib 3.8+, GitHub actions, remove obsolete features)

Pull Request - State: closed - Opened by yantosca about 1 year ago
Labels: structural modification, bugfix, github actions

#282 - GCPy 1.4.1 usages of seaborn-talk is deprecated in older matplotlib versions

Issue - State: closed - Opened by lizziel about 1 year ago - 2 comments
Labels: bug, colors / display, dependencies

#281 - Bump jinja2 from 3.0.3 to 3.1.3 in /docs

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: dependencies

#280 - Add option to create drydep velocity plots from benchmark output

Pull Request - State: closed - Opened by yantosca about 1 year ago
Labels: feature, benchmark plots and tables

#280 - Add option to create drydep velocity plots from benchmark output

Pull Request - State: open - Opened by yantosca about 1 year ago
Labels: feature, benchmark plots and tables

#279 - Bug fix: Use proper default value for weightsdir in file_regrid.py

Pull Request - State: closed - Opened by yantosca about 1 year ago
Labels: regridding, bugfix

#279 - Bug fix: Use proper default value for weightsdir in file_regrid.py

Pull Request - State: closed - Opened by yantosca about 1 year ago
Labels: regridding, bugfix

#278 - TypeError encountered when running file_regrid.py

Issue - State: closed - Opened by yantosca about 1 year ago - 1 comment
Labels: bug, regridding

#278 - TypeError encountered when running file_regrid.py

Issue - State: closed - Opened by yantosca about 1 year ago - 1 comment
Labels: bug, regridding

#277 - Add inquiry functions to return nearest model data to a (lat,lon) location; Update benchmark model vs. obs scripts; Add models vs sondes output

Pull Request - State: closed - Opened by yantosca about 1 year ago - 2 comments
Labels: feature, benchmark plots and tables, structural modification, utilities

GitHub / geoschem/gcpy issues and pull requests