Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / genomic-medicine-sweden/tomte issues and pull requests
#126 - Add tag in vcf
Issue -
State: open - Opened by jemten 5 months ago
Labels: enhancement
#125 - vcfs with only one variant per line so that they can be handled by Scout
Issue -
State: open - Opened by Lucpen 5 months ago
- 1 comment
Labels: bug
#124 - Pass strand information correctly to DROP
Issue -
State: open - Opened by Lucpen 5 months ago
Labels: bug
#123 - Template update nf-core/tools version 2.14.1
Pull Request -
State: closed - Opened by Lucpen 5 months ago
- 1 comment
#122 - Template update for nf-core/tools version 2.14.1
Pull Request -
State: closed - Opened by Lucpen 5 months ago
#121 - Update tools
Pull Request -
State: closed - Opened by Lucpen 5 months ago
- 2 comments
Labels: Ready for review
#120 - Update nf-core template
Issue -
State: open - Opened by jemten 5 months ago
Labels: enhancement
#119 - FAI index input parameter
Issue -
State: closed - Opened by arvindsundaram 5 months ago
- 3 comments
Labels: enhancement
#118 - Update CODEOWNERS
Pull Request -
State: closed - Opened by pbiology 5 months ago
- 2 comments
#117 - Merge pull request #116 from genomic-medicine-sweden/dev
Pull Request -
State: closed - Opened by Lucpen 5 months ago
- 1 comment
#116 - Patch release 2.0.1 - Grinch
Pull Request -
State: closed - Opened by Lucpen 5 months ago
- 1 comment
#115 - Patch Publish research file vep
Pull Request -
State: closed - Opened by Lucpen 5 months ago
- 1 comment
#114 - Merge pull request #113 from genomic-medicine-sweden/dev
Pull Request -
State: closed - Opened by Lucpen 5 months ago
- 1 comment
#113 - Release 2.0.0
Pull Request -
State: closed - Opened by Lucpen 6 months ago
- 3 comments
#112 - feat prepare for release
Pull Request -
State: closed - Opened by Lucpen 6 months ago
- 1 comment
#111 - Merge to master
Pull Request -
State: closed - Opened by Lucpen 6 months ago
- 2 comments
#110 - Updated modules
Pull Request -
State: closed - Opened by Lucpen 6 months ago
- 1 comment
#109 - removed vep_filters parameter will now be generated from clinical panel
Pull Request -
State: closed - Opened by Lucpen 6 months ago
- 1 comment
#108 - changed parameter names from switch to skip
Pull Request -
State: closed - Opened by Lucpen 6 months ago
- 1 comment
#107 - Make function to branches references into compressed or uncompressed
Pull Request -
State: closed - Opened by Lucpen 6 months ago
- 1 comment
#106 - Update FastQC
Pull Request -
State: closed - Opened by fellen31 6 months ago
- 1 comment
#105 - Reformatted prepare references subworkflow
Pull Request -
State: closed - Opened by Lucpen 6 months ago
- 1 comment
#104 - feat add args to AE and AS
Pull Request -
State: closed - Opened by Lucpen 6 months ago
- 1 comment
#103 - fixed asereadcounter
Pull Request -
State: closed - Opened by Lucpen 6 months ago
- 1 comment
Labels: bug
#102 - ASEREADCOUNTER mixes up samples
Issue -
State: closed - Opened by Lucpen 6 months ago
Labels: bug
#101 - Adding meta
Pull Request -
State: closed - Opened by Lucpen 6 months ago
- 2 comments
#100 - Added ci test with all switches off
Pull Request -
State: closed - Opened by Lucpen 7 months ago
- 1 comment
#99 - Add an automatic test where all switches are off
Issue -
State: closed - Opened by Lucpen 7 months ago
Labels: enhancement
#98 - Change all local modules so that references contain meta
Issue -
State: closed - Opened by Lucpen 7 months ago
Labels: enhancement
#97 - fix switch subsampling and downsampling bug
Pull Request -
State: closed - Opened by Lucpen 7 months ago
- 2 comments
Labels: bug
#96 - switch for subsample does not work
Issue -
State: closed - Opened by Lucpen 7 months ago
Labels: bug
#95 - Master
Pull Request -
State: closed - Opened by Lucpen 7 months ago
- 1 comment
#94 - feat updated zenodo
Pull Request -
State: closed - Opened by Lucpen 7 months ago
- 1 comment
#93 - Add zenodo
Pull Request -
State: closed - Opened by Lucpen 7 months ago
- 2 comments
#92 - Merge pull request #87 from genomic-medicine-sweden/dev
Pull Request -
State: closed - Opened by Lucpen 7 months ago
- 1 comment
#91 - feat updated zenodo
Pull Request -
State: closed - Opened by Lucpen 7 months ago
- 1 comment
#90 - Add insert size calculation
Pull Request -
State: closed - Opened by Lucpen 7 months ago
- 1 comment
#89 - Fix channels in the GATK subworkflow
Pull Request -
State: closed - Opened by fellen31 7 months ago
- 1 comment
#88 - adding more citations
Pull Request -
State: closed - Opened by jemten 7 months ago
- 1 comment
#87 - Merge dev to master
Pull Request -
State: closed - Opened by Lucpen 7 months ago
- 1 comment
#86 - Merge master
Pull Request -
State: closed - Opened by Lucpen 7 months ago
- 1 comment
#85 - substitute bgzip and tabix for bgzip_tabix
Pull Request -
State: closed - Opened by Lucpen 7 months ago
- 1 comment
#84 - changing the name of some files
Pull Request -
State: closed - Opened by jemten 7 months ago
- 1 comment
#83 - move vcf merging to after bootstrapann
Pull Request -
State: closed - Opened by Lucpen 7 months ago
- 1 comment
#82 - renaming sample vcf to case
Pull Request -
State: closed - Opened by jemten 7 months ago
- 1 comment
#81 - collect gtf
Pull Request -
State: closed - Opened by Lucpen 7 months ago
- 1 comment
#80 - merge case vcfs
Pull Request -
State: closed - Opened by Lucpen 7 months ago
- 1 comment
#79 - Change name drop output
Pull Request -
State: closed - Opened by Lucpen 7 months ago
- 1 comment
#78 - feat changed name of quant.sf
Pull Request -
State: closed - Opened by Lucpen 7 months ago
- 1 comment
#77 - feat update modules and config file
Pull Request -
State: closed - Opened by Lucpen 7 months ago
- 1 comment
#76 - feat updated igenomes.config
Pull Request -
State: closed - Opened by Lucpen 7 months ago
- 1 comment
#75 - fix made platform into a chanel
Pull Request -
State: closed - Opened by Lucpen 7 months ago
- 1 comment
#74 - update schema
Pull Request -
State: closed - Opened by jemten 7 months ago
- 1 comment
#73 - Template patch v2.13.1
Pull Request -
State: closed - Opened by jemten 7 months ago
- 1 comment
#72 - feat fix_caseid and naming of drop output
Pull Request -
State: closed - Opened by Lucpen 7 months ago
- 1 comment
#71 - updating template
Pull Request -
State: closed - Opened by jemten 7 months ago
- 1 comment
#70 - Update to v2.13 of nf-core TEMPLATE
Issue -
State: closed - Opened by jemten 7 months ago
#69 - fix prev merge
Pull Request -
State: closed - Opened by Lucpen 8 months ago
- 3 comments
#68 - feat fixed drop output format
Pull Request -
State: closed - Opened by Lucpen 8 months ago
Labels: Ready for review
#66 - feat added nf-validation
Pull Request -
State: closed - Opened by Lucpen 9 months ago
- 1 comment
Labels: Ready for review
#65 - Updating template
Pull Request -
State: closed - Opened by Lucpen 10 months ago
- 2 comments
Labels: Ready for review
#64 - Add custom genome config file instead of igenomes
Issue -
State: closed - Opened by A97paupic 10 months ago
- 5 comments
Labels: enhancement
#63 - fix fai
Pull Request -
State: closed - Opened by Lucpen 10 months ago
- 1 comment
#62 - Missing fasta_fai channel when fai file is given
Issue -
State: closed - Opened by jemten 10 months ago
Labels: bug
#61 - Solve some issues
Pull Request -
State: closed - Opened by Lucpen 10 months ago
- 1 comment
Labels: Ready for review
#60 - Add an optional column for sex in DROP annotation
Issue -
State: open - Opened by Lucpen 10 months ago
Labels: enhancement
#59 - Enable bam input
Issue -
State: open - Opened by jemten 11 months ago
Labels: enhancement
#58 - trying to fix star_index channel cardinality
Pull Request -
State: closed - Opened by jemten 11 months ago
- 1 comment
#57 - adding closures to modules.config
Pull Request -
State: closed - Opened by jemten 11 months ago
- 1 comment
#56 - Split the configuration file
Issue -
State: closed - Opened by jemten 11 months ago
#55 - feat bumped up
Pull Request -
State: closed - Opened by Lucpen 11 months ago
- 1 comment
#54 - feat bumped up
Pull Request -
State: closed - Opened by Lucpen 11 months ago
- 1 comment
#53 - feat add date
Pull Request -
State: closed - Opened by Lucpen 11 months ago
- 1 comment
#52 - feat add date
Pull Request -
State: closed - Opened by Lucpen 11 months ago
- 1 comment
#50 - Add option of choosing name of the DROP output files
Issue -
State: closed - Opened by Lucpen 11 months ago
Labels: enhancement
#49 - Add documentation
Pull Request -
State: closed - Opened by Lucpen 11 months ago
- 1 comment
Labels: documentation, Ready for review
#48 - Add more switches
Issue -
State: closed - Opened by Lucpen 11 months ago
Labels: enhancement
#47 - updating name of process in config
Pull Request -
State: closed - Opened by jemten 11 months ago
- 1 comment
#46 - trying to fix the concatenation of fastq files
Pull Request -
State: closed - Opened by jemten 11 months ago
- 2 comments
#45 - changing some references from nf-core to gms
Pull Request -
State: closed - Opened by jemten 12 months ago
- 1 comment
#44 - Testing full pipeline
Pull Request -
State: closed - Opened by Lucpen 12 months ago
- 1 comment
Labels: Ready for review
#43 - Switch to nf-core version of VEP
Issue -
State: closed - Opened by jemten 12 months ago
Labels: enhancement
#42 - Implement nf-validation
Issue -
State: closed - Opened by jemten 12 months ago
- 1 comment
Labels: enhancement
#41 - Document the pipeline
Issue -
State: closed - Opened by jemten 12 months ago
Labels: documentation
#40 - feat add metro-map
Pull Request -
State: closed - Opened by Lucpen 12 months ago
- 1 comment
#39 - adding codeowners file
Pull Request -
State: closed - Opened by jemten about 1 year ago
- 3 comments
#38 - Template 2.10
Pull Request -
State: closed - Opened by jemten about 1 year ago
- 1 comment
#37 - Divide clin res
Pull Request -
State: closed - Opened by Lucpen about 1 year ago
- 3 comments
Labels: Ready for review
#36 - Small changes
Pull Request -
State: closed - Opened by Lucpen about 1 year ago
- 3 comments
#35 - Drop added AberrantSplicing
Pull Request -
State: closed - Opened by Lucpen about 1 year ago
- 2 comments
#34 - feat add drop AE
Pull Request -
State: closed - Opened by Lucpen about 1 year ago
- 1 comment
Labels: Ready for review
#33 - feat prettifying code
Pull Request -
State: closed - Opened by Lucpen about 1 year ago
- 1 comment
#32 - Drop ae part 1 make count files
Pull Request -
State: closed - Opened by Lucpen over 1 year ago
- 2 comments
Labels: Ready for review
#31 - feat transcript fasta no longer needs to be provided
Pull Request -
State: closed - Opened by Lucpen over 1 year ago
- 2 comments
#30 - Nf core template merge 2.9
Pull Request -
State: closed - Opened by jemten over 1 year ago
- 1 comment
#29 - Updated modules
Pull Request -
State: closed - Opened by Lucpen over 1 year ago
- 2 comments
Labels: Ready for review
#28 - Add cram
Pull Request -
State: closed - Opened by Lucpen over 1 year ago
- 1 comment
#27 - compress downsample output
Pull Request -
State: closed - Opened by jemten over 1 year ago
- 1 comment