Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / genomehubs/genomehubs issues and pull requests

#280 - Feature/split-attr-and-file-templates

Pull Request - State: closed - Opened by rjchallis over 1 year ago

#279 - Feature/split-attr-and-file-templates

Pull Request - State: closed - Opened by rjchallis over 1 year ago

#278 - Issue277/Tree-report-ignoring-`includeEstimates`

Pull Request - State: closed - Opened by rjchallis over 1 year ago

#277 - Tree report ignoring `includeEstimates`

Issue - State: closed - Opened by rjchallis over 1 year ago - 1 comment
Labels: bug

#276 - Bugfix/run-on-self-hosted

Pull Request - State: closed - Opened by rjchallis over 1 year ago

#274 - keep default columns when selecting alt subset

Pull Request - State: closed - Opened by rjchallis over 1 year ago

#273 - handle API connection errors gracefully

Pull Request - State: closed - Opened by rjchallis over 1 year ago

#272 - Feature/upgrade-to-es-version-8.6.2

Pull Request - State: closed - Opened by rjchallis almost 2 years ago

#271 - Histograms with dates not expanding

Issue - State: closed - Opened by ccaio almost 2 years ago - 2 comments
Labels: bug

#270 - import prokaryotes

Issue - State: open - Opened by rjchallis almost 2 years ago
Labels: data

#269 - Upgrade to ElasticSearch 8.6

Issue - State: closed - Opened by rjchallis almost 2 years ago - 1 comment
Labels: enhancement

#268 - selecting alternate column summaries makes default columns disappear

Issue - State: closed - Opened by rjchallis almost 2 years ago
Labels: bug

#267 - Add a multi search endpoint

Issue - State: open - Opened by rjchallis almost 2 years ago
Labels: enhancement

#266 - fix footer links

Pull Request - State: closed - Opened by sujaikumar almost 2 years ago

#265 - Feature/fix-footer-links

Pull Request - State: closed - Opened by sujaikumar almost 2 years ago - 1 comment

#264 - Inconsistent behaviour of pop-ups

Issue - State: closed - Opened by ccaio almost 2 years ago - 1 comment
Labels: bug

#263 - Feature/add-subset-syntax

Pull Request - State: closed - Opened by rjchallis almost 2 years ago

#262 - Issue261/Trees-showing-additional-taxa-compared-to-query

Pull Request - State: closed - Opened by rjchallis almost 2 years ago

#261 - Trees showing additional taxa compared to query

Issue - State: closed - Opened by ccaio almost 2 years ago
Labels: bug

#260 - Issue257/Reduce-log-messages-in-some-genomehubs-commands

Pull Request - State: closed - Opened by rjchallis about 2 years ago - 1 comment

#258 - Feature/null-in-query

Pull Request - State: closed - Opened by rjchallis about 2 years ago

#257 - Reduce log messages in some genomehubs commands

Issue - State: closed - Opened by sujaikumar about 2 years ago - 1 comment
Labels: enhancement

#256 - Feature/parse-busco

Pull Request - State: closed - Opened by rjchallis about 2 years ago

#255 - Add bioproject_description during genomehubs-parse --ncbi-datasets-genome

Issue - State: closed - Opened by sujaikumar about 2 years ago - 1 comment
Labels: enhancement

#254 - Issue250/Assembly-index-unable-to-use-names-and-ranks-in-search

Pull Request - State: closed - Opened by rjchallis about 2 years ago

#253 - enable selecting rank and name columns for tax_lineage

Pull Request - State: closed - Opened by rjchallis about 2 years ago

#252 - set tax_name for assembly index taxon autocomplete

Pull Request - State: closed - Opened by rjchallis about 2 years ago

#251 - Bump ua-parser-js from 0.7.31 to 0.7.33 in /src/genomehubs-ui

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#250 - Assembly index: unable to use names and ranks in search

Issue - State: closed - Opened by ccaio about 2 years ago
Labels: bug

#249 - unable to sort results or build queries using organelle attribute

Issue - State: closed - Opened by ccaio about 2 years ago - 2 comments
Labels: bug

#248 - unable to select rank and name columns for tax_lineage

Issue - State: closed - Opened by ccaio about 2 years ago
Labels: bug

#246 - Bump json5 from 2.2.1 to 2.2.3 in /src/genomehubs-api

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#245 - Bump json5 from 1.0.1 to 1.0.2

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#244 - Bump json5 from 1.0.1 to 1.0.2 in /src/genomehubs-ui

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#243 - Bump json5 and babel-loader

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#242 - Bump express from 4.17.2 to 4.17.3 in /src/packaged-ui

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#241 - Bump express from 4.17.1 to 4.18.2 in /src/genomehubs-ui

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#240 - Bump qs and express in /src/packaged-ui

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#239 - Bump qs from 6.10.1 to 6.10.3 in /src/genomehubs-ui

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#238 - Issue227/Sampling-location-dots-on-map-not-linking-out

Pull Request - State: closed - Opened by rjchallis about 2 years ago

#237 - Bump minimatch from 3.0.4 to 3.1.2 in /src/genomehubs-ui

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#236 - fix Search table values - clicking once does not show popup sometimes

Pull Request - State: closed - Opened by rjchallis about 2 years ago

#235 - fix UI - query builder - can't type depth

Pull Request - State: closed - Opened by rjchallis about 2 years ago

#233 - UI - query builder - can't type depth

Issue - State: closed - Opened by sujaikumar about 2 years ago
Labels: bug

#232 - Bump loader-utils from 1.4.0 to 1.4.2 in /src/genomehubs-ui

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#231 - Debug/missing-genome-size

Pull Request - State: closed - Opened by rjchallis over 2 years ago

#230 - Bump loader-utils from 1.4.0 to 1.4.2

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#229 - Bugfix/ui-tests

Pull Request - State: closed - Opened by rjchallis over 2 years ago

#228 - Bump loader-utils from 1.4.0 to 1.4.1 in /src/genomehubs-ui

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#227 - Sampling location dots on map not linking out

Issue - State: closed - Opened by ccaio over 2 years ago - 1 comment
Labels: bug

#224 - Linking organelle assemblies to corresponding nuclear assembly ID

Issue - State: open - Opened by ccaio over 2 years ago
Labels: enhancement

#223 - Set assemblies as primary and flag potentially partial / symbiont assemblies

Issue - State: open - Opened by ccaio over 2 years ago - 2 comments
Labels: enhancement

#222 - Scatter report does not return correct TSV

Issue - State: open - Opened by Euphrasiologist over 2 years ago - 4 comments

#221 - Allow mode as a primary/transverse value when multiple sources

Issue - State: closed - Opened by ccaio over 2 years ago
Labels: core feature

#220 - Bump terser from 5.10.0 to 5.15.0 in /src/genomehubs-ui

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#219 - Bump prismjs and refractor in /src/genomehubs-ui

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#218 - Bump ejs and webpack-bundle-analyzer in /src/genomehubs-ui

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#217 - Feature/multi-assembly-features

Pull Request - State: closed - Opened by rjchallis over 2 years ago

#216 - Bump d3-color, d3-scale, d3-scale-chromatic and recharts in /src/genomehubs-ui

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#215 - Bump d3-color and d3-scale in /src/genomehubs-api

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#214 - Suggestion to separate direct and descendent values from ancestral estimates

Issue - State: closed - Opened by ccaio over 2 years ago - 1 comment
Labels: enhancement

#213 - Feature/layout-fixes

Pull Request - State: closed - Opened by rjchallis over 2 years ago

#212 - Issue211/unable-to-fill-values-in-query-box

Pull Request - State: closed - Opened by rjchallis over 2 years ago

#211 - unable to fill values in query box

Issue - State: closed - Opened by ccaio over 2 years ago
Labels: bug

#210 - Bump terser from 5.10.0 to 5.14.2

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#209 - Bump terser from 5.10.0 to 5.14.2 in /src/genomehubs-ui

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#208 - Issue120/Generate-a-tabular-report

Pull Request - State: closed - Opened by rjchallis over 2 years ago

#207 - Feature/url-basename

Pull Request - State: closed - Opened by rjchallis over 2 years ago

#206 - Issue186/standardise-doc-id-prefixes

Pull Request - State: closed - Opened by rjchallis over 2 years ago

#205 - Issue197/add-a-geographic-report

Pull Request - State: closed - Opened by rjchallis over 2 years ago

#204 - Bump moment from 2.29.3 to 2.29.4 in /src/genomehubs-api

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#203 - Issue202/Unable-to-search-from-EBP-histograms

Pull Request - State: closed - Opened by rjchallis over 2 years ago

#202 - Unable to search from EBP histograms

Issue - State: closed - Opened by ccaio over 2 years ago
Labels: bug

#201 - Allow selecting result columns before assembly index search

Pull Request - State: closed - Opened by rjchallis over 2 years ago

#200 - Allow transposing of results from one index as input in queries of different index

Issue - State: closed - Opened by ccaio over 2 years ago - 2 comments
Labels: core feature

#199 - make tax_rank(species) a default term in assembly index queries

Issue - State: closed - Opened by ccaio over 2 years ago - 1 comment
Labels: enhancement, wontfix

#198 - Allow selecting result columns before assembly index search

Issue - State: closed - Opened by ccaio over 2 years ago
Labels: enhancement

#197 - add a geographic report

Issue - State: closed - Opened by rjchallis over 2 years ago

#196 - rename xInY plots

Issue - State: closed - Opened by rjchallis over 2 years ago - 2 comments

#195 - Issue185/Fix-mismatch-between-scatter-points-and-category-legends

Pull Request - State: closed - Opened by rjchallis over 2 years ago

#189 - Issue182/add-a-sample-index (#188)

Pull Request - State: closed - Opened by sujaikumar over 2 years ago

#186 - standardise doc id prefixes

Issue - State: closed - Opened by rjchallis over 2 years ago

#185 - Fix mismatch between scatter points and category legends

Issue - State: closed - Opened by ccaio over 2 years ago
Labels: bug

#182 - add a sample index

Issue - State: closed - Opened by rjchallis over 2 years ago
Labels: core feature

#157 - create an API endpoint to describe available values and valid operators

Issue - State: open - Opened by rjchallis almost 3 years ago - 1 comment

#142 - genomehubs index --file-metadata should check existing files

Issue - State: closed - Opened by sujaikumar almost 3 years ago - 1 comment
Labels: enhancement

#141 - Bump ejs from 3.1.6 to 3.1.7 in /src/packaged-ui

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago
Labels: dependencies

#127 - Bump async from 2.6.3 to 2.6.4 in /src/genomehubs-ui

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago
Labels: dependencies

#120 - Generate a tabular report

Issue - State: closed - Opened by rjchallis almost 3 years ago - 2 comments
Labels: enhancement

#77 - rjchallis/issue29

Pull Request - State: closed - Opened by rjchallis over 3 years ago

#76 - add genomehubs parse --gbif

Issue - State: closed - Opened by sujaikumar over 3 years ago - 1 comment

#72 - Calculate EBP metrics

Issue - State: closed - Opened by rjchallis almost 4 years ago

#47 - Check all names / synonyms while indexing new data in GoaT

Issue - State: closed - Opened by sujaikumar almost 4 years ago - 1 comment

#44 - Get assembly data from NCBI datasets summary

Issue - State: closed - Opened by rjchallis almost 4 years ago - 2 comments
Labels: enhancement

#43 - Get assembly stats from EBI

Issue - State: closed - Opened by sujaikumar almost 4 years ago - 1 comment
Labels: enhancement