genialis/resolwe-bio-py issues and pull requests

#357 - Change form of metadata cache file timestamp in ReSDK tables

Pull Request - State: open - Opened by JureZmrzlikar 23 days ago

#356 - Simple Github Actions workflow for E2E

Pull Request - State: closed - Opened by acopar 2 months ago

#355 - Remove ``RNA-SeQC`` metrics from ``RNATables`` QC fields

Pull Request - State: closed - Opened by marcellevstek 2 months ago

#354 - Add AnzeLovse to the list of trusted developers in Jenkinsfile

Pull Request - State: closed - Opened by acopar 3 months ago

#353 - Replace int64 with nullable Int64 in RNATables

Pull Request - State: closed - Opened by AnzeLovse 3 months ago - 1 comment

#352 - Add variant related models

Pull Request - State: open - Opened by gregorjerse 4 months ago

#351 - Feature/rna iterate

Pull Request - State: open - Opened by gregorjerse 4 months ago

#350 - Migrate Jenkins workflow to Github Actions

Pull Request - State: closed - Opened by plojyon 4 months ago

#349 - Add restart method to the data resource

Pull Request - State: closed - Opened by gregorjerse 4 months ago

#348 - Prepare release 21.1.0

Pull Request - State: closed - Opened by JureZmrzlikar 5 months ago

#347 - Add Python 3.12 support

Pull Request - State: closed - Opened by JureZmrzlikar 5 months ago

#346 - Improve download

Pull Request - State: closed - Opened by JureZmrzlikar 5 months ago - 1 comment

#345 - Invalidate resdk.tables cache on AnnotationValue updates

Pull Request - State: closed - Opened by JureZmrzlikar 5 months ago

#344 - Bump black version

Pull Request - State: closed - Opened by gregorjerse 5 months ago

#343 - Pin black to version 23.12.0

Pull Request - State: closed - Opened by gregorjerse 5 months ago

#342 - Add packaging as dependency

Pull Request - State: closed - Opened by gregorjerse 5 months ago

#341 - Show progress bar for upload/download

Pull Request - State: closed - Opened by gregorjerse 6 months ago

#340 - Require urllib 2.0 only for Python 3.10 or higher

Pull Request - State: closed - Opened by gregorjerse 6 months ago

#339 - Add modified as read-only field to AnnotationValue

Pull Request - State: closed - Opened by gregorjerse 6 months ago

#338 - Fix dowload bug

Pull Request - State: closed - Opened by gregorjerse 6 months ago

#337 - Fix/details error

Pull Request - State: closed - Opened by gregorjerse 6 months ago - 1 comment

#336 - Fix downloading tables data

Pull Request - State: closed - Opened by gregorjerse 7 months ago

#335 - Raise warning instead of error in case of multiple builds

Pull Request - State: closed - Opened by JureZmrzlikar 7 months ago

#334 - Fix dtype in RNATables QC for column mean_three_prime_bias

Pull Request - State: closed - Opened by JureZmrzlikar 7 months ago

#333 - Add bulk annotation helper on sample

Pull Request - State: closed - Opened by gregorjerse 8 months ago - 2 comments

#332 - Add docs for annotations

Pull Request - State: closed - Opened by JureZmrzlikar 8 months ago - 1 comment

#331 - Deprecate inherit_collection parmeter in duplicate() methods

Pull Request - State: closed - Opened by JureZmrzlikar 8 months ago

#330 - Fix log message in case of interactive login

Pull Request - State: closed - Opened by JureZmrzlikar 8 months ago

#329 - Check for version compatibility on login

Pull Request - State: closed - Opened by gregorjerse 8 months ago

#328 - Release 20.0.0

Pull Request - State: closed - Opened by JureZmrzlikar 8 months ago

#327 - Feature/streamlined annotations

Pull Request - State: closed - Opened by gregorjerse 9 months ago

#326 - Explicitly set dtypes of all columns in RNATabnles.qc

Pull Request - State: closed - Opened by JureZmrzlikar 9 months ago

#325 - Fix VariantTables in case genes are missing from KB

Pull Request - State: closed - Opened by JureZmrzlikar 9 months ago

#324 - Warn user of missing gene ID / symbol mappings

Pull Request - State: closed - Opened by JureZmrzlikar 10 months ago

#323 - Show inherited members members in docs/ref

Pull Request - State: closed - Opened by JureZmrzlikar 10 months ago

#322 - Print message on successful login

Pull Request - State: closed - Opened by plojyon 10 months ago

#321 - Extend the list of supported QC fields in ``RNATables``

Pull Request - State: closed - Opened by marcellevstek 10 months ago - 1 comment

#320 - Replace username with email where necessary

Pull Request - State: closed - Opened by JureZmrzlikar 10 months ago

#319 - Feature/patch release

Pull Request - State: closed - Opened by gregorjerse 11 months ago

#318 - Add marcellevstek to the list of trusted authors

Pull Request - State: closed - Opened by JureZmrzlikar 11 months ago

#317 - Add assigned reads by STAR quantification to metadata fields of RNATables

Pull Request - State: closed - Opened by marcellevstek 12 months ago

#316 - Update list of trusted authors in Jenkinsfile

Pull Request - State: closed - Opened by JureZmrzlikar 12 months ago

#315 - Use SAML authentication for login

Pull Request - State: closed - Opened by plojyon 12 months ago

#314 - Use SAML authentication for login

Pull Request - State: closed - Opened by plojyon 12 months ago

#313 - Fix RNATables in case of very large collecitons

Pull Request - State: closed - Opened by JureZmrzlikar about 1 year ago

#312 - Prepare release 18.0.0

Pull Request - State: closed - Opened by JureZmrzlikar about 1 year ago

#311 - Fix delete is now a background task

Pull Request - State: closed - Opened by gregorjerse about 1 year ago

#310 - Prepare release 17.0.0

Pull Request - State: closed - Opened by JureZmrzlikar about 1 year ago

#309 - Fix/e2e tests

Pull Request - State: closed - Opened by gregorjerse about 1 year ago

#308 - Fix ReSDK tables in case of local server storage

Pull Request - State: closed - Opened by JureZmrzlikar over 1 year ago

#307 - Update readthedocs config

Pull Request - State: closed - Opened by gregorjerse over 1 year ago

#306 - Support Python 3.10

Pull Request - State: closed - Opened by gregorjerse over 1 year ago

#305 - Fix an edge case when assigning build to RNATables.rc.attrs

Pull Request - State: closed - Opened by JureZmrzlikar over 1 year ago

#304 - Add build to RNATables.rc.attrs and RNATables.exp.attrs

Pull Request - State: closed - Opened by JureZmrzlikar over 1 year ago

#303 - Fix Sample.get_reads() utility method

Pull Request - State: closed - Opened by JureZmrzlikar over 1 year ago

#302 - Optionally show progress bar in resdk.Query.iterate()

Pull Request - State: closed - Opened by JureZmrzlikar over 1 year ago

#301 - Add build property to RNATables

Pull Request - State: closed - Opened by JureZmrzlikar over 1 year ago - 1 comment

#300 - Rework VariantTables

Pull Request - State: closed - Opened by JureZmrzlikar over 1 year ago - 1 comment

#299 - Prepare release 16.0.0

Pull Request - State: closed - Opened by JureZmrzlikar over 1 year ago

#298 - Use posix style paths when uploading to S3

Pull Request - State: closed - Opened by gregorjerse over 1 year ago

#297 - Modernize package structure

Pull Request - State: closed - Opened by JureZmrzlikar over 1 year ago

#296 - Use direct path to objects uploaded to S3 bucket

Pull Request - State: closed - Opened by gregorjerse almost 2 years ago

#295 - Query the ID of Resource instead of Resource itself

Pull Request - State: closed - Opened by JureZmrzlikar almost 2 years ago

#294 - Support setting descriptor on Relation resource

Pull Request - State: closed - Opened by JureZmrzlikar almost 2 years ago

#293 - Support setting billing account on Collection

Pull Request - State: closed - Opened by JureZmrzlikar about 2 years ago

#292 - Update contributing docs with new release procedure

Pull Request - State: closed - Opened by JureZmrzlikar about 2 years ago

#291 - Prepare release 15.0.0

Pull Request - State: closed - Opened by JureZmrzlikar about 2 years ago

#290 - Add resdk.tables.MLTables

Pull Request - State: closed - Opened by JureZmrzlikar about 2 years ago

#289 - Variant tables

Pull Request - State: closed - Opened by JureZmrzlikar about 2 years ago - 1 comment

#288 - Metadata: Add column if match is in df index, remove matched column

Pull Request - State: closed - Opened by AGregorc about 2 years ago - 1 comment

#287 - Support upload to S3 bucket

Pull Request - State: closed - Opened by gregorjerse about 2 years ago

#286 - Automate release process of ReSDK with GitHub actions

Pull Request - State: closed - Opened by JureZmrzlikar about 2 years ago

#285 - Fix parsing new metadata format in resdk.tables.BaseTables.meta

Pull Request - State: closed - Opened by JureZmrzlikar about 2 years ago - 1 comment

#284 - Table.meta not working with the latest upload-metadata processes

Issue - State: closed - Opened by AGregorc about 2 years ago - 1 comment