Ecosyste.ms: Issues

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GitHub / genestack/python-client issues and pull requests

#423 - [ODM-11002] Update push to global pypi

Pull Request - State: open - Opened by genestack-okunitsyn 7 months ago

#421 - chore(deps): update dependency tox to v4.13.0

Pull Request - State: closed - Opened by renovate[bot] 8 months ago
Labels: renovate

#420 - chore(deps): update dependency setuptools to v69.1.0

Pull Request - State: closed - Opened by renovate[bot] 8 months ago
Labels: renovate

#419 - chore(deps): update dependency pytest to v8.0.1

Pull Request - State: closed - Opened by renovate[bot] 8 months ago
Labels: renovate

#418 - [ODM-11243] Remove genestack prefixes

Pull Request - State: closed - Opened by genestack-okunitsyn 8 months ago

#417 - [ODM-10568] Update earthly version

Pull Request - State: closed - Opened by genestack-okunitsyn 8 months ago

#416 - [ODM-11050] Make odm-api as a dependency for odm-sdk

Pull Request - State: closed - Opened by genestack-okunitsyn 8 months ago

#415 - [ODM-11050] Merge python sdks

Pull Request - State: closed - Opened by genestack-okunitsyn 8 months ago - 4 comments

#414 - ODM-11179: remove check_version call (see ODM-10837)

Pull Request - State: closed - Opened by m-smazhevsky 8 months ago

#413 - chore(deps): update dependency pytest to v8

Pull Request - State: closed - Opened by renovate[bot] 8 months ago
Labels: renovate

#412 - chore(deps): update dependency pyopenssl to v24

Pull Request - State: closed - Opened by renovate[bot] 8 months ago
Labels: renovate

#411 - chore(deps): update dependency jsonschema to v4.21.1

Pull Request - State: closed - Opened by renovate[bot] 9 months ago
Labels: renovate

#410 - [ODM-10997] Drop future using

Pull Request - State: closed - Opened by genestack-okunitsyn 9 months ago

#409 - chore(deps): update dependency pytest to v7.4.4

Pull Request - State: closed - Opened by renovate[bot] 9 months ago
Labels: renovate

#408 - ODM-10837: Remove install command from genestack_application_manager

Pull Request - State: closed - Opened by nzorkic-genestack 9 months ago - 2 comments

#407 - ODM-10841: simplify logic to determine odm host

Pull Request - State: closed - Opened by m-smazhevsky 10 months ago - 3 comments

#406 - [--ODM-10011--]: share study throw on insufficient permission

Pull Request - State: closed - Opened by viapivov 10 months ago

#405 - chore(deps): update dependency sphinx-rtd-theme to v2

Pull Request - State: closed - Opened by renovate[bot] 10 months ago
Labels: renovate

#404 - chore(deps): update dependency keyring to v24.3.0

Pull Request - State: closed - Opened by renovate[bot] 11 months ago
Labels: renovate

#403 - chore(deps): update dependency jsonschema to v4.20.0

Pull Request - State: closed - Opened by renovate[bot] 11 months ago
Labels: renovate

#402 - chore(deps): update dependency jsonschema to v4.19.2

Pull Request - State: closed - Opened by renovate[bot] 11 months ago
Labels: renovate

#401 - chore(deps): update dependency pyrsistent to v0.20.0

Pull Request - State: closed - Opened by renovate[bot] 11 months ago
Labels: renovate

#400 - chore(deps): update dependency pyopenssl to v23.3.0

Pull Request - State: closed - Opened by renovate[bot] 11 months ago
Labels: renovate

#399 - chore(deps): update dependency pytest to v7.4.3

Pull Request - State: closed - Opened by renovate[bot] 11 months ago
Labels: renovate

#398 - [ODM-10759] Fix RTD build also for python-client

Pull Request - State: closed - Opened by genestack-okunitsyn 11 months ago

#397 - chore(deps): update dependency jsonschema to v4.19.1

Pull Request - State: closed - Opened by renovate[bot] about 1 year ago
Labels: renovate

#396 - ODM-10459 remove possibility to upload a raw file to ODM

Pull Request - State: closed - Opened by natalyatodorova about 1 year ago

#395 - chore(deps): update dependency pytest to v7.4.2

Pull Request - State: closed - Opened by renovate[bot] about 1 year ago
Labels: renovate

#394 - chore(deps): update dependency pytest to v7.4.1

Pull Request - State: closed - Opened by renovate[bot] about 1 year ago
Labels: renovate

#393 - chore(deps): update dependency sphinx-rtd-theme to v1

Pull Request - State: closed - Opened by renovate[bot] about 1 year ago
Labels: renovate

#392 - chore(deps): update dependency keyring to v24

Pull Request - State: closed - Opened by renovate[bot] about 1 year ago
Labels: renovate

#391 - chore(deps): update dependency sphinx-rtd-theme to v0.5.2

Pull Request - State: closed - Opened by renovate[bot] about 1 year ago
Labels: renovate

#390 - chore(deps): update dependency pytest to v7.4.0

Pull Request - State: closed - Opened by renovate[bot] about 1 year ago
Labels: renovate

#389 - chore(deps): update dependency pyrsistent to v0.19.3

Pull Request - State: closed - Opened by renovate[bot] about 1 year ago
Labels: renovate

#388 - chore(deps): update dependency pyopenssl to v23.2.0

Pull Request - State: closed - Opened by renovate[bot] about 1 year ago
Labels: renovate

#387 - chore(deps): update dependency jsonschema to v4.19.0

Pull Request - State: closed - Opened by renovate[bot] about 1 year ago
Labels: renovate

#386 - Dependency Dashboard

Issue - State: open - Opened by renovate[bot] about 1 year ago

#385 - Configure Renovate

Pull Request - State: closed - Opened by renovate[bot] about 1 year ago

#384 - [ODM-10339] Set bdist_wheel universal

Pull Request - State: closed - Opened by genestack-okunitsyn about 1 year ago - 2 comments

#383 - [ODM-10175] Separate image and chart oci locations

Pull Request - State: closed - Opened by genestack-okunitsyn over 1 year ago

#382 - Update minimal required python version

Pull Request - State: closed - Opened by m-smazhevsky over 1 year ago

#381 - Bump `requests` to v2.31.0

Pull Request - State: closed - Opened by klas-genestack over 1 year ago - 4 comments

#380 - [ODM-10025] Add extra index url to requirements files

Pull Request - State: closed - Opened by genestack-okunitsyn over 1 year ago

#379 - [ODM-9676] Update image names for following name convention

Pull Request - State: closed - Opened by genestack-okunitsyn over 1 year ago

#378 - Update versioning for installing out of CI

Pull Request - State: closed - Opened by genestack-okunitsyn over 1 year ago

#377 - rename harbor docker registry

Pull Request - State: closed - Opened by genestack-okunitsyn over 1 year ago

#376 - add condition for release

Pull Request - State: closed - Opened by genestack-okunitsyn over 1 year ago - 1 comment

#375 - Bump pytest version

Pull Request - State: closed - Opened by egor-alexandrov over 1 year ago

#374 - update publish artifacts

Pull Request - State: closed - Opened by genestack-okunitsyn over 1 year ago

#373 - move to harbor p.1

Pull Request - State: closed - Opened by genestack-okunitsyn over 1 year ago

#372 - Support Python 3.11

Pull Request - State: closed - Opened by genestack-okunitsyn over 1 year ago - 1 comment

#371 - remove unnecessary ARGs

Pull Request - State: closed - Opened by genestack-okunitsyn over 1 year ago

#370 - ODM-9555 update docs for reference genome upload

Pull Request - State: closed - Opened by olepark-gs over 1 year ago

#369 - update Earthfiles

Pull Request - State: closed - Opened by genestack-okunitsyn over 1 year ago

#368 - update pypi-login script

Pull Request - State: closed - Opened by genestack-okunitsyn over 1 year ago

#367 - add internal release

Pull Request - State: closed - Opened by genestack-okunitsyn over 1 year ago

#366 - [ODM-9057] update genestack user setup doc

Pull Request - State: closed - Opened by dgm90 over 1 year ago - 2 comments

#365 - provide secrets for push in pypi

Pull Request - State: closed - Opened by genestack-okunitsyn almost 2 years ago

#364 - update Earthfile preconditions

Pull Request - State: closed - Opened by genestack-okunitsyn almost 2 years ago

#363 - add push steps

Pull Request - State: closed - Opened by genestack-okunitsyn almost 2 years ago

#362 - Fix Earthfile bug

Pull Request - State: closed - Opened by genestack-okunitsyn almost 2 years ago

#361 - Update release pipeline and move it into Earthfile

Pull Request - State: closed - Opened by genestack-okunitsyn almost 2 years ago

#360 - use job

Pull Request - State: closed - Opened by genestack-okunitsyn almost 2 years ago

#359 - fix release pipe

Pull Request - State: closed - Opened by genestack-okunitsyn almost 2 years ago

#358 - automate python release

Pull Request - State: closed - Opened by genestack-okunitsyn almost 2 years ago

#357 - Add 'future' and 'pyrsistent' to doc requirements (ODM-9051)

Pull Request - State: closed - Opened by genestack-okunitsyn almost 2 years ago

#356 - Revert "correct import"

Pull Request - State: closed - Opened by klas-genestack almost 2 years ago

#355 - revert

Pull Request - State: closed - Opened by genestack-okunitsyn almost 2 years ago - 1 comment

#354 - correct import

Pull Request - State: closed - Opened by genestack-okunitsyn almost 2 years ago

#353 - Merge stable to master after 0.35.1 release

Pull Request - State: closed - Opened by nzorkic-genestack almost 2 years ago

#352 - Merge master to stable for 0.35.1 release

Pull Request - State: closed - Opened by nzorkic-genestack almost 2 years ago

#351 - ODM-9022: Add newline after "specify host" error message

Pull Request - State: closed - Opened by nzorkic-genestack almost 2 years ago

#350 - Merge stable to master for release

Pull Request - State: closed - Opened by nzorkic-genestack almost 2 years ago

#349 - Merge master to the stable for the release

Pull Request - State: closed - Opened by nzorkic-genestack almost 2 years ago

#348 - ODM-8670: Remove leftover default_host

Pull Request - State: closed - Opened by nzorkic-genestack almost 2 years ago

#347 - ODM-8670: Set host as mandatory

Pull Request - State: closed - Opened by nzorkic-genestack almost 2 years ago

#346 - [ODM-5039] - remove anonymous and rename world group

Pull Request - State: closed - Opened by alexander-skoblikov over 3 years ago

#345 - [ODM-5040] - remove anonymous

Pull Request - State: closed - Opened by alexander-skoblikov over 3 years ago

#344 - ODM-4748: removed support for pathway DB files uploading

Pull Request - State: closed - Opened by LeonidChistov almost 4 years ago

#343 - Guess and try both legacy and "modern" endpoints (ODM-4668)

Pull Request - State: closed - Opened by klas-genestack almost 4 years ago - 1 comment

#342 - Revert "FilesUtil: bring back `share_files`" (ODM-2544)

Pull Request - State: closed - Opened by klas-genestack almost 4 years ago

#341 - Add install requires pyrsistent(ODM-3955)

Pull Request - State: closed - Opened by AleksPark about 4 years ago

#340 - Remove OrganizationUtil (ODM-3844)

Pull Request - State: closed - Opened by AleksPark about 4 years ago

#339 - Cleanup unused (ODM-3755)

Pull Request - State: closed - Opened by AleksPark about 4 years ago

#338 - [JBKB-1036] Remove MetainfoRelatedValueFilter if not used

Pull Request - State: closed - Opened by MaxSum94 about 4 years ago

#337 - files_util: Remove `get_group_folder_info` method (ODM-3747)

Pull Request - State: closed - Opened by alexander-polovtcev about 4 years ago

#336 - [JBKB-996] Delete findMetainfoRelatedTerms method from Genestack Core

Pull Request - State: closed - Opened by MaxSum94 about 4 years ago

#335 - [JBKB-996] Delete findMetainfoRelatedTerms method from Genestack Core

Pull Request - State: closed - Opened by MaxSum94 about 4 years ago

#334 - Support Python 3 (ODM-2544)

Pull Request - State: closed - Opened by klas-genestack over 4 years ago

#333 - Remove SudoUtils application (ODM-3338)

Pull Request - State: closed - Opened by alexander-polovtcev over 4 years ago

#332 - Remove constants related to billing (ODM-1660)

Pull Request - State: closed - Opened by alexander-polovtcev over 4 years ago

#331 - Fix missing exit code in application manager (ODM-2390)

Pull Request - State: closed - Opened by vasiliy-bout almost 5 years ago

#330 - application-manager: return nonzero exit status on error (ODM-2390)

Pull Request - State: closed - Opened by vasiliy-bout almost 5 years ago

#329 - uploader: Allow to specify folder by accession AS-21

Pull Request - State: closed - Opened by genestack-solomatin about 5 years ago

#328 - uploader: dont allow to upload files with the same names

Pull Request - State: closed - Opened by genestack-solomatin about 5 years ago

#326 - Improve command line arguments usability

Pull Request - State: closed - Opened by vasiliy-bout over 5 years ago

#325 - Add type hints for FileInitializer

Pull Request - State: closed - Opened by genestack-solomatin over 5 years ago

#324 - add timeout for request

Pull Request - State: closed - Opened by efimova-lena0 over 5 years ago