Ecosyste.ms: Issues

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GitHub / geneontology/neo issues and pull requests

#61 - consider updating wormbase expansion

Issue - State: open - Opened by balhoff almost 4 years ago - 3 comments

#60 - load curated gpi file for sars-cov-2

Issue - State: closed - Opened by cmungall over 4 years ago - 7 comments

#60 - load curated gpi file for sars-cov-2

Issue - State: closed - Opened by cmungall over 4 years ago - 7 comments

#59 - Roll out Xenopus Anatomy Ontology (XAO) for use in Noctua

Issue - State: closed - Opened by kltm over 4 years ago - 2 comments
Labels: enhancement

#59 - Roll out Xenopus Anatomy Ontology (XAO) for use in Noctua

Issue - State: closed - Opened by kltm over 4 years ago - 2 comments
Labels: enhancement

#58 - Remove NEO build dependency on frozen datasets.json

Issue - State: open - Opened by kltm over 4 years ago - 1 comment
Labels: bug

#58 - Remove NEO build dependency on frozen datasets.json

Issue - State: open - Opened by kltm over 4 years ago - 1 comment
Labels: bug

#57 - Add localId to synonyms when making NEO

Pull Request - State: closed - Opened by cmungall over 4 years ago

#57 - Add localId to synonyms when making NEO

Pull Request - State: closed - Opened by cmungall over 4 years ago

#56 - fixed typo

Pull Request - State: closed - Opened by cmungall over 4 years ago

#56 - fixed typo

Pull Request - State: closed - Opened by cmungall over 4 years ago

#55 - adding sars-cov-2 to neo build

Pull Request - State: closed - Opened by cmungall over 4 years ago

#55 - adding sars-cov-2 to neo build

Pull Request - State: closed - Opened by cmungall over 4 years ago

#54 - Identify test cases for NEO (and autocomplete) builds

Issue - State: open - Opened by kltm over 4 years ago - 1 comment
Labels: enhancement, help wanted

#54 - Identify test cases for NEO (and autocomplete) builds

Issue - State: open - Opened by kltm over 4 years ago - 1 comment
Labels: enhancement, help wanted

#52 - Need to check RGD identifiers in neo

Issue - State: closed - Opened by vanaukenk almost 5 years ago - 6 comments
Labels: bug

#52 - Need to check RGD identifiers in neo

Issue - State: closed - Opened by vanaukenk almost 5 years ago - 6 comments
Labels: bug

#51 - Some PR identifiers are not making it into the final (GOlr pipeline) product

Issue - State: closed - Opened by kltm almost 5 years ago - 12 comments
Labels: bug

#51 - Some PR identifiers are not making it into the final (GOlr pipeline) product

Issue - State: closed - Opened by kltm almost 5 years ago - 12 comments
Labels: bug

#50 - NEO no longer seems to build

Issue - State: closed - Opened by kltm almost 5 years ago - 7 comments
Labels: bug

#50 - NEO no longer seems to build

Issue - State: closed - Opened by kltm almost 5 years ago - 7 comments
Labels: bug

#49 - Load GPI file for UniProt reviewed entries for Virus and Bacteria in NEO

Issue - State: closed - Opened by pgaudet almost 5 years ago - 11 comments

#49 - Load GPI file for UniProt reviewed entries for Virus and Bacteria in NEO

Issue - State: closed - Opened by pgaudet almost 5 years ago - 11 comments

#48 - Create an is-a closure version of NEO for Noctua autocomplete

Issue - State: closed - Opened by vanaukenk about 5 years ago - 2 comments

#48 - Create an is-a closure version of NEO for Noctua autocomplete

Issue - State: closed - Opened by vanaukenk about 5 years ago - 2 comments

#47 - develop neo-lite for use in go-lego

Issue - State: closed - Opened by goodb about 5 years ago - 4 comments

#47 - develop neo-lite for use in go-lego

Issue - State: closed - Opened by goodb about 5 years ago - 4 comments

#46 - NEO may be flooded with uninteresting tRNA ids/labels from GOA

Issue - State: open - Opened by kltm about 5 years ago - 1 comment
Labels: bug, question

#46 - NEO may be flooded with uninteresting tRNA ids/labels from GOA

Issue - State: open - Opened by kltm about 5 years ago - 1 comment
Labels: bug, question

#45 - fix travis

Issue - State: closed - Opened by cmungall over 5 years ago

#45 - fix travis

Issue - State: closed - Opened by cmungall over 5 years ago

#44 - add biolink category

Pull Request - State: open - Opened by cmungall over 5 years ago

#44 - add biolink category

Pull Request - State: open - Opened by cmungall over 5 years ago

#43 - Adding pseudocap and ecoli, fixes #42

Pull Request - State: closed - Opened by cmungall over 5 years ago

#43 - Adding pseudocap and ecoli, fixes #42

Pull Request - State: closed - Opened by cmungall over 5 years ago

#42 - Add psuedocap

Issue - State: closed - Opened by cmungall over 5 years ago

#41 - Include life stage ontologies in neo

Issue - State: open - Opened by vanaukenk over 5 years ago - 2 comments

#41 - Include life stage ontologies in neo

Issue - State: open - Opened by vanaukenk over 5 years ago - 2 comments

#40 - Adding biolink categories

Pull Request - State: closed - Opened by cmungall over 5 years ago - 1 comment

#40 - Adding biolink categories

Pull Request - State: closed - Opened by cmungall over 5 years ago - 1 comment

#39 - Revert build-neo-makefile.py

Pull Request - State: closed - Opened by kltm almost 6 years ago

#39 - Revert build-neo-makefile.py

Pull Request - State: closed - Opened by kltm almost 6 years ago

#38 - Some genes not available in autocomplete, symbol and id issues

Issue - State: closed - Opened by vanaukenk almost 6 years ago - 14 comments
Labels: bug

#38 - Some genes not available in autocomplete, symbol and id issues

Issue - State: closed - Opened by vanaukenk almost 6 years ago - 14 comments
Labels: bug

#36 - SGD has incomplete GPI

Issue - State: closed - Opened by suzialeksander almost 6 years ago - 11 comments

#36 - SGD has incomplete GPI

Issue - State: closed - Opened by suzialeksander almost 6 years ago - 11 comments

#35 - Load swissprot

Pull Request - State: open - Opened by cmungall about 6 years ago - 1 comment

#35 - Load swissprot

Pull Request - State: open - Opened by cmungall about 6 years ago - 1 comment

#32 - Unique Recommended Name for a GP

Issue - State: closed - Opened by lpalbou over 6 years ago - 5 comments

#32 - Unique Recommended Name for a GP

Issue - State: closed - Opened by lpalbou over 6 years ago - 5 comments

#31 - Metadata on Gene Product

Issue - State: open - Opened by lpalbou over 6 years ago

#31 - Metadata on Gene Product

Issue - State: open - Opened by lpalbou over 6 years ago

#30 - Fix MGI

Pull Request - State: closed - Opened by cmungall over 6 years ago

#30 - Fix MGI

Pull Request - State: closed - Opened by cmungall over 6 years ago

#29 - Fix gramene gene product URIs

Issue - State: closed - Opened by cmungall over 6 years ago - 2 comments

#29 - Fix gramene gene product URIs

Issue - State: closed - Opened by cmungall over 6 years ago - 2 comments

#28 - Fix gene product URIs

Pull Request - State: closed - Opened by cmungall over 6 years ago

#28 - Fix gene product URIs

Pull Request - State: closed - Opened by cmungall over 6 years ago

#27 - skip suspicious lines

Pull Request - State: closed - Opened by cmungall over 6 years ago

#27 - skip suspicious lines

Pull Request - State: closed - Opened by cmungall over 6 years ago

#26 - Use CHEBI information macromolecule

Pull Request - State: closed - Opened by cmungall almost 7 years ago - 1 comment

#25 - classify all GPI entities as information macromolecules

Issue - State: closed - Opened by cmungall almost 7 years ago - 1 comment

#25 - classify all GPI entities as information macromolecules

Issue - State: closed - Opened by cmungall almost 7 years ago - 1 comment

#24 - Load all of swissprot

Issue - State: closed - Opened by cmungall about 7 years ago - 3 comments
Labels: enhancement, help wanted

#24 - Load all of swissprot

Issue - State: closed - Opened by cmungall about 7 years ago - 3 comments
Labels: enhancement, help wanted

#23 - Only add an entry for "true" isoforms.

Pull Request - State: closed - Opened by cmungall about 7 years ago

#23 - Only add an entry for "true" isoforms.

Pull Request - State: closed - Opened by cmungall about 7 years ago

#22 - IRF3 Hsap is showing up multiple times

Issue - State: closed - Opened by cmungall about 7 years ago - 1 comment

#22 - IRF3 Hsap is showing up multiple times

Issue - State: closed - Opened by cmungall about 7 years ago - 1 comment

#21 - Fold neo into main pipeline

Issue - State: open - Opened by cmungall over 7 years ago - 1 comment

#20 - Include gpi for isoforms for human too

Pull Request - State: closed - Opened by cmungall over 7 years ago

#20 - Include gpi for isoforms for human too

Pull Request - State: closed - Opened by cmungall over 7 years ago

#19 - Adding xenbase

Pull Request - State: closed - Opened by cmungall over 7 years ago - 1 comment

#19 - Adding xenbase

Pull Request - State: closed - Opened by cmungall over 7 years ago - 1 comment

#17 - NEO term URIs are different from Golr

Issue - State: open - Opened by balhoff over 7 years ago - 10 comments

#17 - NEO term URIs are different from Golr

Issue - State: open - Opened by balhoff over 7 years ago - 10 comments

#16 - Fixed some typos.

Pull Request - State: closed - Opened by balhoff over 7 years ago

#16 - Fixed some typos.

Pull Request - State: closed - Opened by balhoff over 7 years ago

#3 - Why are MGI assoc files a mix of gene and protein?

Issue - State: closed - Opened by cmungall about 9 years ago - 10 comments

#3 - Why are MGI assoc files a mix of gene and protein?

Issue - State: closed - Opened by cmungall about 9 years ago - 10 comments

#1 - Add RNA central

Issue - State: open - Opened by cmungall about 9 years ago - 6 comments

#1 - Add RNA central

Issue - State: open - Opened by cmungall about 9 years ago - 6 comments