Ecosyste.ms: Issues

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GitHub / gemtools/gemtools issues and pull requests

#38 - Bump numpy from 1.7.0 to 1.22.0

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#37 - Bump numpy from 1.7.0 to 1.21.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#36 - broken link in README.md

Issue - State: open - Opened by scottdaniel over 4 years ago

#35 - installation failure with setup.py

Issue - State: closed - Opened by podunn58 almost 6 years ago - 3 comments

#34 - Fatal error: exception Failure when running gem-indexer

Issue - State: open - Opened by yjx1217 about 6 years ago - 3 comments

#33 - could not stat index file

Issue - State: open - Opened by diyasen about 6 years ago - 1 comment

#32 - error about gemtools rna-pipeline

Issue - State: open - Opened by weiiioyo over 6 years ago - 1 comment

#31 - Gemtools error while computing transcriptome

Issue - State: open - Opened by Fazulur almost 7 years ago

#30 - 'python setup.py install' fails to compile

Issue - State: open - Opened by MatthewPorterGN almost 7 years ago

#29 - HTTPS-only PyPI change breaks installation

Issue - State: open - Opened by MatthewPorterGN almost 7 years ago

#28 - Error while executing step bam

Issue - State: open - Opened by vitorlimac2 about 7 years ago - 1 comment

#27 - GEM indexer 1.7.1 i3 fails with "Segmentation fault"

Issue - State: open - Opened by sidorov-si over 7 years ago - 1 comment

#25 - Add ctypedef to gt_strand - fix #23

Pull Request - State: open - Opened by emi80 over 7 years ago

#24 - barnaserver down again

Issue - State: closed - Opened by fransua over 7 years ago - 3 comments

#23 - incorrect cython declaration of "gt_strand"

Issue - State: open - Opened by rcortini over 8 years ago

#22 - Install fails with "name 'sys_platform is not defined'"

Issue - State: open - Opened by rcortini over 8 years ago - 10 comments

#21 - Revert "Temporarily fix the problem of baranserver domain"

Pull Request - State: closed - Opened by Poshi over 8 years ago

#20 - Temporarily fix the problem of baranserver domain

Pull Request - State: closed - Opened by fransua over 8 years ago - 7 comments

#19 - gemtools convert MAP to BAM do not add XS tag

Issue - State: open - Opened by ghost about 9 years ago

#18 - fix the problem for installing.

Pull Request - State: closed - Opened by fransua over 9 years ago

#15 - 'merge' step error in the rna-pipeline

Issue - State: open - Opened by biounix over 9 years ago

#14 - gt.gtfcount error in 1.7.1

Issue - State: open - Opened by biounix almost 10 years ago - 1 comment

#13 - gemtools fails when input *.bz2 file has multiple streams

Issue - State: open - Opened by hberger about 10 years ago - 1 comment

#12 - Can't corretly install gemtools from pypi or cloned source

Issue - State: closed - Opened by hberger about 10 years ago - 1 comment

#11 - No child processes ERROR

Issue - State: open - Opened by marcDabad about 10 years ago

#8 - Write general.json file with general statistics

Pull Request - State: open - Opened by maikroeder about 11 years ago

#7 - Read fastq files with dots in the sequences

Issue - State: open - Opened by emi80 about 11 years ago
Labels: enhancement

#6 - Check input files

Issue - State: closed - Opened by emi80 over 11 years ago
Labels: enhancement

#5 - GEMtools throwing an exception for fastq files with ".fq" extension

Issue - State: closed - Opened by emi80 over 11 years ago
Labels: bug

#4 - Mapping off the end of the reference

Issue - State: closed - Opened by emi80 over 11 years ago
Labels: bug

#3 - Add XS field support to SAM conversion

Issue - State: closed - Opened by thasso almost 12 years ago - 1 comment
Labels: enhancement

#2 - gt_template_copy fails when both maps and mmaps should be copied

Issue - State: closed - Opened by thasso almost 12 years ago
Labels: bug

#1 - Throw Exception when samtools is not installed

Issue - State: closed - Opened by thasso almost 12 years ago
Labels: bug