Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / gem-pasteur/PanACoTA issues and pull requests
#48 - Conda installation conflict
Issue -
State: open - Opened by ASUQ 5 months ago
#47 - ERROR ERROR: Your list file 'Examples/input_files/list_genomes.lst' does not exist. Please provide a list file.
Issue -
State: open - Opened by asershova 5 months ago
- 1 comment
#46 - Could not determine version of cmpress - please install version 1.1 or higher
Issue -
State: closed - Opened by octolis 7 months ago
- 1 comment
#45 - [Enhancement] using bakta instead of prokka
Issue -
State: open - Opened by rdenise 8 months ago
- 1 comment
#44 - PanACoTA align There is not any protein for genome X
Issue -
State: closed - Opened by AlperYurtseven 10 months ago
- 5 comments
#43 - >mash sketch error
Issue -
State: closed - Opened by sujeetpowar 10 months ago
- 3 comments
#42 - PanACoTA prepare command download from NCBI error
Issue -
State: closed - Opened by lear-711 about 1 year ago
- 2 comments
#41 - running only formating of annotation step
Issue -
State: closed - Opened by aymericola about 1 year ago
- 3 comments
#40 - Error while trying to run prokka on
Issue -
State: closed - Opened by aymericola over 1 year ago
- 2 comments
#39 - Alignment fails when using gembase format
Issue -
State: closed - Opened by jeanrjc over 1 year ago
- 1 comment
#38 - Broken in conda with python > 3.6
Issue -
State: closed - Opened by psydvl almost 2 years ago
- 1 comment
#37 - cpu count vs available cpus
Issue -
State: closed - Opened by EricDeveaud about 2 years ago
- 3 comments
#36 - No distance matrix in output of FastME tree building
Issue -
State: closed - Opened by rasedb00 about 2 years ago
- 3 comments
Labels: enhancement
#35 - Protein ortho for separate branch
Pull Request -
State: closed - Opened by RedSnail over 2 years ago
#34 - Error at alignment
Issue -
State: closed - Opened by ryobon-dev over 2 years ago
- 4 comments
#33 - L90 filtering
Issue -
State: closed - Opened by Sirbius over 2 years ago
- 1 comment
#32 - Issue 31
Issue -
State: closed - Opened by asetGem over 2 years ago
- 1 comment
#30 - Protein ortho
Pull Request -
State: closed - Opened by RedSnail almost 3 years ago
- 4 comments
#29 - Add a Gitter chat badge to README.md
Pull Request -
State: closed - Opened by gitter-badger about 3 years ago
#24 - The prepare step misses genomes
Issue -
State: closed - Opened by asetGem about 3 years ago
#20 - The prepare step misses genomes
Issue -
State: closed - Opened by RedSnail about 3 years ago
- 3 comments
#19 - Prokka error
Issue -
State: closed - Opened by ryobon-dev about 3 years ago
- 4 comments
#18 - Feature: passing strains list to ncbi-genome-download
Pull Request -
State: closed - Opened by oxygen311 about 3 years ago
- 4 comments
Labels: enhancement
#17 - Feature request: pass `-S/--strains` to `ncbi-genome-download`
Issue -
State: closed - Opened by oxygen311 about 3 years ago
- 11 comments
Labels: enhancement
#16 - Bootstrapping with `PanACoTA all`
Issue -
State: closed - Opened by oxygen311 over 3 years ago
- 2 comments
Labels: bug
#15 - the error about "The core genome contains 0 families"
Issue -
State: closed - Opened by albertzhuo over 3 years ago
- 6 comments
Labels: help wanted, question
#14 - Problem with mmseq
Issue -
State: closed - Opened by yoshikal over 3 years ago
- 5 comments
Labels: bug
#13 - Problem with iqtree2
Issue -
State: closed - Opened by genomesandMGEs over 3 years ago
- 6 comments
#12 - Combining step1 and step2 on the prepare module
Issue -
State: closed - Opened by genomesandMGEs over 3 years ago
- 2 comments
#11 - PanACoTA all skips cutn parametr
Issue -
State: closed - Opened by oxygen311 over 3 years ago
- 5 comments
Labels: bug
#10 - query/target coverage
Issue -
State: closed - Opened by ramiroricardo over 3 years ago
- 1 comment
Labels: question
#9 - prokka installed with PanACoTA under conda environment did not work for me.
Issue -
State: closed - Opened by Happyalisa over 3 years ago
- 5 comments
#8 - IQtree error: -quiet does not exist
Issue -
State: closed - Opened by IsabelFE almost 4 years ago
- 2 comments
#7 - Download individual assemblies with prepare
Issue -
State: closed - Opened by IsabelFE almost 4 years ago
- 5 comments
Labels: good first issue
#6 - 'utf-8' codec can't decode byte 0x80 in position 3131: invalid start byte
Issue -
State: closed - Opened by IsabelFE almost 4 years ago
- 15 comments
Labels: bug
#5 - Combining genomes from several sources in one analysis
Issue -
State: closed - Opened by IsabelFE almost 4 years ago
- 5 comments
Labels: good first issue, help wanted
#4 - Choosing assembly level in `prepare` module
Issue -
State: closed - Opened by oxygen311 almost 4 years ago
- 1 comment
Labels: enhancement
#3 - annotate error: Uh oh! Sequence file 'XXXXX_genomic.fna_prepare-split5N.fna' contains duplicate sequence ID
Issue -
State: closed - Opened by IsabelFE almost 4 years ago
- 5 comments
Labels: new dependency format
#2 - Error using annotate: unexpected keyword argument 'max_value'
Issue -
State: closed - Opened by IsabelFE almost 4 years ago
- 22 comments
#1 - Logger Error
Issue -
State: closed - Opened by TorresRC about 4 years ago
- 5 comments
Labels: bug