gaynorr/AlphaSimR issues and pull requests

#215 - Provide locus, chromosome, and haplotype components of genetic, breeding, ... values

Issue - State: open - Opened by gregorgorjanc 28 days ago - 3 comments

#214 - Improve restrSegSites documentation and error message

Issue - State: closed - Opened by XingerTang 28 days ago - 5 comments

#213 - Added parentAverage and mendelianSampling functions

Pull Request - State: open - Opened by gregorgorjanc 29 days ago

#211 - Added asCategorical()

Pull Request - State: closed - Opened by gregorgorjanc about 1 month ago - 5 comments

#210 - document recHist

Issue - State: open - Opened by hannesbecher about 2 months ago - 4 comments

#207 - CRAN release 1.6.1

Pull Request - State: closed - Opened by gaynorr 3 months ago

#206 - Fix for #205 merging and subsetting populations when misc slot has a matrix

Pull Request - State: closed - Opened by gregorgorjanc 3 months ago - 2 comments

#205 - Can not merge populations that have matrices in misc slot

Issue - State: closed - Opened by gregorgorjanc 3 months ago - 1 comment

#204 - setMisc and getMisc functions do not exist in the latest version (1.6.0)

Issue - State: open - Opened by metwallys 3 months ago - 3 comments

#202 - General Question About QTL Effect

Issue - State: closed - Opened by zjwinn 3 months ago - 2 comments

#200 - Increase the maximum SegSites number of runMacs

Issue - State: closed - Opened by jamonterotena 3 months ago - 1 comment

#199 - Genome Vignette

Pull Request - State: open - Opened by RosCraddock 4 months ago - 1 comment

#197 - Using index of selection for selection in population

Issue - State: closed - Opened by zjwinn 5 months ago - 11 comments

#195 - Release 1.6.0

Pull Request - State: closed - Opened by gaynorr 5 months ago

#193 - Add link to the on-line course in pkgdown

Issue - State: open - Opened by gregorgorjanc 6 months ago

#191 - Combining populations drops EBVs if one population does not have them

Issue - State: open - Opened by gregorgorjanc 6 months ago - 2 comments

#190 - Inconsistent behaviour when merging pop and a NULL pop

Issue - State: closed - Opened by gregorgorjanc 6 months ago - 3 comments

#189 - Exported meanEBV() and added varEBV()

Pull Request - State: closed - Opened by gregorgorjanc 7 months ago

#188 - switchTrait() introduces NA values in VarE

Issue - State: closed - Opened by irenedecarlos 9 months ago - 2 comments

#179 - Website: point to Owen's "mechanistic model" simulation

Issue - State: open - Opened by gregorgorjanc 11 months ago - 1 comment

#178 - Liability-Threshold Model

Issue - State: open - Opened by gaynorr 12 months ago

#177 - Provide more informative SimParam errors

Issue - State: open - Opened by gregorgorjanc 12 months ago

#176 - Clarifying that newPop() doesn't recombine founder genomes

Pull Request - State: closed - Opened by gregorgorjanc 12 months ago

#175 - Import 1segSite haplo

Issue - State: closed - Opened by david20011999 12 months ago - 3 comments

#174 - Enable passing function or misc slots to the use argument in selection functions #173

Pull Request - State: closed - Opened by gregorgorjanc about 1 year ago

#173 - Enable passing function or misc slots to the use argument in selection functions

Issue - State: open - Opened by gregorgorjanc about 1 year ago - 1 comment

#173 - Enable passing function or misc slots to the use argument in selection functions

Issue - State: closed - Opened by gregorgorjanc about 1 year ago - 1 comment

#172 - Sync CATTLE parameters #164

Pull Request - State: closed - Opened by gregorgorjanc about 1 year ago

#171 - Sync CATTLE parameters #164

Pull Request - State: closed - Opened by gregorgorjanc about 1 year ago

#170 - Consider having genParam write to popMisc

Issue - State: open - Opened by gaynorr about 1 year ago - 2 comments

#169 - Add function to create empty MultiPop

Issue - State: open - Opened by gregorgorjanc about 1 year ago

#168 - Flipping misc organisation to address #107

Pull Request - State: closed - Opened by gregorgorjanc about 1 year ago - 6 comments

#167 - Added imprinting trait and functionality

Pull Request - State: closed - Opened by gregorgorjanc about 1 year ago - 8 comments

#166 - Merge fix in restrSegSites

Pull Request - State: closed - Opened by gaynorr about 1 year ago

#165 - Write vignette on how to modify runMacs() and how to use other simulators for founders

Issue - State: open - Opened by gregorgorjanc about 1 year ago - 3 comments

#164 - Sync stdpopsim & AlphaSimR runMaCS() parameters of Holstein

Issue - State: closed - Opened by gregorgorjanc about 1 year ago - 2 comments

#163 - Convert Genetic Maps

Issue - State: open - Opened by gaynorr about 1 year ago

#162 - Doc update for miscPop

Pull Request - State: closed - Opened by gregorgorjanc about 1 year ago

#161 - Devel

Pull Request - State: closed - Opened by gaynorr about 1 year ago

#160 - Add popMisc

Issue - State: closed - Opened by gaynorr about 1 year ago - 1 comment
Labels: enhancement

#159 - Vignette for using misc

Issue - State: open - Opened by gaynorr about 1 year ago - 2 comments

#158 - Get AlphaSimR onto R universe

Issue - State: open - Opened by gregorgorjanc over 1 year ago

#157 - Docs on rate/scale param of the gamma distribution #156

Pull Request - State: closed - Opened by gregorgorjanc over 1 year ago

#156 - Add rate parameter to gamma distribution for QTL effects

Issue - State: closed - Opened by gregorgorjanc over 1 year ago - 2 comments

#154 - potential bug with writeRecords

Issue - State: closed - Opened by poca87 over 1 year ago - 5 comments

#153 - More appropriate README.md

Pull Request - State: closed - Opened by gregorgorjanc over 1 year ago

#152 - Rename or alias setPheno() to simPheno()

Issue - State: open - Opened by gregorgorjanc over 1 year ago

#151 - Faster multitrait simulations

Issue - State: open - Opened by gaynorr over 1 year ago
Labels: enhancement

#150 - Expanding GxE Modelling

Issue - State: open - Opened by gaynorr over 1 year ago - 1 comment
Labels: enhancement

#148 - Documenting user defined functions in selectInd() #146

Pull Request - State: closed - Opened by gregorgorjanc over 1 year ago

#144 - Update NEWS.md

Pull Request - State: closed - Opened by philipbg over 1 year ago - 1 comment

#143 - Multipop

Pull Request - State: closed - Opened by philipbg over 1 year ago - 5 comments

#142 - makeCross2 and ID problem

Issue - State: closed - Opened by AudreyAAMartin over 1 year ago - 6 comments

#141 - ped as vector in 'importInbredGeno' and 'importHaplo'

Issue - State: closed - Opened by gaynorr over 1 year ago - 1 comment
Labels: bug

#140 - Integrate altAddTraitAD

Issue - State: closed - Opened by gaynorr over 1 year ago
Labels: enhancement

#138 - SelectInd(): definition of eligible individuals is problematic (full simulation VS simulation+data)

Issue - State: closed - Opened by AudreyAAMartin over 1 year ago - 2 comments
Labels: enhancement

#137 - Check user interrupt

Issue - State: closed - Opened by maxecoulter over 1 year ago - 3 comments

#134 - Flexibility to add extra slot

Issue - State: open - Opened by mab658 almost 2 years ago - 4 comments

#132 - Update misc.R

Pull Request - State: closed - Opened by philipbg almost 2 years ago - 2 comments

#131 - pedigreeCross fails with half founders

Issue - State: open - Opened by AudreyAAMartin almost 2 years ago - 3 comments

#130 - Fix pedigreeCross

Issue - State: open - Opened by AudreyAAMartin almost 2 years ago - 1 comment