Ecosyste.ms: Issues

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GitHub / gavinsimpson/gratia issues and pull requests

#206 - change in **dplyr** produces warning

Issue - State: closed - Opened by mikeroswell almost 2 years ago - 1 comment

#205 - Size to linewidth

Issue - State: closed - Opened by cmagelssen almost 2 years ago - 2 comments

#203 - Suppress multiple match warning

Pull Request - State: closed - Opened by DavisVaughan almost 2 years ago - 2 comments

#202 - Handle the new sz smooths in smooth_estimates and draw

Issue - State: closed - Opened by gavinsimpson almost 2 years ago
Labels: bug, enhancement, plotting

#201 - Could not to transform the est and confit interval using transform_fun

Issue - State: closed - Opened by Guiquan-27 almost 2 years ago - 3 comments

#197 - How to remove tensor interaction in gam function?

Issue - State: closed - Opened by Nataliannash about 2 years ago

#196 - Allow evenly to work *within* the levels of a grouping factor

Issue - State: open - Opened by gavinsimpson about 2 years ago
Labels: enhancement

#195 - Function not applied to error bands for parametric terms in gamm

Issue - State: closed - Opened by grasshoppermouse about 2 years ago - 2 comments
Labels: bug

#193 - The colour scale is off in at least TPRS and tensor product smooths for 2d smooths

Issue - State: closed - Opened by gavinsimpson about 2 years ago - 1 comment
Labels: bug, plotting

#191 - When plotting 3-d and 4-d smooths choose to plot 2d smooth as the surface

Issue - State: closed - Opened by gavinsimpson about 2 years ago
Labels: enhancement

#190 - draw.gam() should set widths = 1

Issue - State: closed - Opened by gavinsimpson about 2 years ago - 3 comments
Labels: bug

#189 - delete_response() fails on a model with an offset

Issue - State: closed - Opened by gavinsimpson about 2 years ago
Labels: bug

#188 - difference_smooths() returns non-conformable arrays

Issue - State: closed - Opened by Dallak about 2 years ago - 5 comments

#187 - smooth_estimates fail for bi-variate conditioned factor-smooth

Issue - State: closed - Opened by Silviculturalist about 2 years ago - 2 comments

#186 - Add `fix_family_rd()`

Issue - State: open - Opened by gavinsimpson about 2 years ago
Labels: enhancement

#185 - Add `fix_family_qf()`

Issue - State: open - Opened by gavinsimpson about 2 years ago
Labels: enhancement

#184 - Add `fix_family_cdf()`

Issue - State: open - Opened by gavinsimpson about 2 years ago
Labels: enhancement

#183 - Add cdf, inverse cdf, and rng functions for all families handled by mgcv

Issue - State: open - Opened by gavinsimpson about 2 years ago
Labels: enhancement, help wanted, consistency

#182 - Plotting slices of a 2D smooth

Issue - State: closed - Opened by fhui28 over 2 years ago - 3 comments
Labels: question

#181 - hex logo

Issue - State: open - Opened by Aariq over 2 years ago - 1 comment

#180 - smooth_estimates() is not generating estimates for all integer years

Issue - State: closed - Opened by JuanWang814 over 2 years ago - 1 comment
Labels: not a bug

#178 - Add `overview()` as a high-level overview of a fitted GAM

Issue - State: closed - Opened by gavinsimpson over 2 years ago - 1 comment
Labels: enhancement

#177 - Add better labels for plots produced from `difference_smooths()`

Issue - State: closed - Opened by gavinsimpson over 2 years ago - 1 comment
Labels: plotting

#176 - Do some fun things with posteriors

Issue - State: open - Opened by gavinsimpson over 2 years ago
Labels: enhancement

#175 - difference_smooths() doesn't use `newdata`

Issue - State: closed - Opened by gavinsimpson over 2 years ago
Labels: bug, enhancement

#174 - legend in draw()

Issue - State: closed - Opened by BivGEV over 2 years ago - 2 comments
Labels: plotting

#173 - draw.gam documentation for rug= argument for >1-D smooths

Pull Request - State: closed - Opened by dill over 2 years ago - 1 comment

#171 - Question for factor levels in gam

Issue - State: closed - Opened by Nataliannash over 2 years ago
Labels: question

#169 - Tensor product smooths can't handle a random.effect marginal smooth

Issue - State: open - Opened by gavinsimpson over 2 years ago - 1 comment
Labels: bug

#168 - derivatives() should ignore random effect smooths

Issue - State: closed - Opened by garincle over 2 years ago - 2 comments
Labels: bug

#167 - `confint.gam` still using `evaluate_smooth` internally

Issue - State: closed - Opened by gavinsimpson over 2 years ago
Labels: bug

#166 - Significant differences in output in examples on M1 Macs

Issue - State: closed - Opened by gavinsimpson over 2 years ago - 1 comment
Labels: cran

#165 - Better documentation

Issue - State: closed - Opened by gavinsimpson over 2 years ago - 1 comment
Labels: documentation

#163 - Harmonise arguments `select`, `term`, `smooth` to `select`

Issue - State: closed - Opened by gavinsimpson over 2 years ago
Labels: consistency

#162 - `confint.gam()` etc with simultaneous intervals fails for a factor by model

Issue - State: closed - Opened by gavinsimpson over 2 years ago
Labels: bug

#161 - Handle GAMLSS models fitted by `GJRM::gamlss()`

Issue - State: open - Opened by gavinsimpson over 2 years ago
Labels: enhancement

#160 - Handle boosted GAMs from mboost?

Issue - State: open - Opened by gavinsimpson over 2 years ago
Labels: enhancement

#159 - aes_string and aes_ may be deprecated in the future are aren't recommended any longer

Issue - State: closed - Opened by gavinsimpson over 2 years ago - 3 comments
Labels: good first issue, plotting

#156 - Change the label on all partial effects plots to be "Partial effect"

Issue - State: closed - Opened by gavinsimpson over 2 years ago
Labels: bug, good first issue, plotting

#155 - Add the basis type to the individual plots produced by draw.gam and draw.smooth_estimates

Issue - State: closed - Opened by gavinsimpson over 2 years ago
Labels: enhancement, good first issue, plotting

#153 - Add argument n_2d to `draw.gam()`

Issue - State: open - Opened by gavinsimpson over 2 years ago
Labels: enhancement, plotting

#152 - Fix all plot_smooth methods to produce correct subtitle with a continuous by smooth

Issue - State: closed - Opened by gavinsimpson over 2 years ago - 1 comment
Labels: bug, plotting

#151 - Update draw.basis so that it works for bivariate (and higher dimension) smooths

Issue - State: open - Opened by gavinsimpson over 2 years ago - 1 comment
Labels: bug, enhancement, plotting

#150 - compare_smooths doesn't work for certain valid calls

Issue - State: closed - Opened by gavinsimpson over 2 years ago
Labels: bug

#148 - draw.posterior_smooths isn't using coord_equal for bivariate TRPS smooths

Issue - State: closed - Opened by gavinsimpson over 2 years ago
Labels: bug

#147 - Add `sim_foo` functions for negative binomial, Tweedie, and other common distributions

Issue - State: closed - Opened by gavinsimpson over 2 years ago
Labels: enhancement

#146 - Change the default branch name to main

Issue - State: closed - Opened by gavinsimpson over 2 years ago - 2 comments

#145 - Add `conditional_difference()`

Issue - State: open - Opened by gavinsimpson over 2 years ago
Labels: enhancement

#144 - constant not applied to interval with `draw(smooth_estimates(...))`

Issue - State: closed - Opened by m-clark over 2 years ago - 2 comments

#143 - Problem with difference_smooths

Issue - State: open - Opened by mbolyanatz over 2 years ago - 7 comments

#142 - `draw` fails for models with no smoothing

Issue - State: closed - Opened by Nelson-Gon over 2 years ago - 2 comments
Labels: bug

#140 - Change `newdata` arg -> `data`

Issue - State: closed - Opened by gavinsimpson over 2 years ago - 3 comments
Labels: consistency

#139 - Add something for concurvity and to visualise it

Issue - State: closed - Opened by gavinsimpson over 2 years ago
Labels: enhancement, good first issue, plotting

#138 - Add an extractor function for the dispersion parameter of estimated models

Issue - State: open - Opened by gavinsimpson over 2 years ago
Labels: enhancement, good first issue

#137 - Method for `basis()` for fitted models to extract the fitted basis functions

Issue - State: closed - Opened by gavinsimpson over 2 years ago
Labels: enhancement

#134 - Allow penalty to work without a fitted model

Issue - State: closed - Opened by gavinsimpson over 2 years ago - 1 comment
Labels: enhancement

#126 - `smooth_samples()` errors when models have both a 1D and 2D smooth

Issue - State: closed - Opened by Aariq almost 3 years ago - 5 comments

#120 - Possibility to use "own" posterior simulation object in confint

Issue - State: closed - Opened by raff-k almost 3 years ago - 6 comments
Labels: enhancement

#117 - Adding sizer to draw() in gratia

Issue - State: closed - Opened by asanders11 about 3 years ago - 6 comments
Labels: enhancement

#108 - Problem with difference smooths and identifiability constraint

Issue - State: closed - Opened by dinga92 over 3 years ago - 4 comments
Labels: enhancement, not a bug

#103 - Include the by variable info in the output from derivatives()

Issue - State: closed - Opened by gavinsimpson over 3 years ago
Labels: enhancement

#101 - Partial derivatives for surfaces

Issue - State: closed - Opened by noamross over 3 years ago - 1 comment

#100 - Derivatives at the scale of the response

Issue - State: closed - Opened by LisaHuelsmann over 3 years ago - 3 comments
Labels: enhancement

#97 - quantile residuals as an option to appraise()

Issue - State: open - Opened by Aariq almost 4 years ago - 1 comment

#89 - Combine plots of `by = fac` smoothers

Issue - State: closed - Opened by RPanczak about 4 years ago - 3 comments
Labels: enhancement

#87 - Option to rotate axis label

Issue - State: closed - Opened by tamas-ferenci about 4 years ago - 4 comments
Labels: enhancement

#86 - Expose `gam.mh()` posterior sampling through `fitted_samples()` etc

Issue - State: closed - Opened by gavinsimpson about 4 years ago - 2 comments
Labels: enhancement

#79 - Allow draw() to plot on the response scale

Issue - State: open - Opened by gavinsimpson over 4 years ago - 7 comments
Labels: enhancement

#73 - Axes not fixed if 3-D smooths are present

Issue - State: closed - Opened by StefanoMezzini over 4 years ago - 4 comments

#70 - Add a function to compute differences of smooths

Issue - State: open - Opened by gavinsimpson over 4 years ago
Labels: enhancement

#68 - Evaluating parametric terms with factor by-variable

Issue - State: closed - Opened by Excidion over 4 years ago - 4 comments
Labels: bug

#67 - Simultaneous confidence interval in prediction for all parameters

Issue - State: open - Opened by raff-k over 4 years ago - 1 comment

#62 - Add worm plot as a diagnostic device option in appraise()

Issue - State: closed - Opened by gavinsimpson almost 5 years ago - 1 comment
Labels: enhancement

#61 - `derivatives()` fails for data frames with character columns

Issue - State: closed - Opened by burchill almost 5 years ago - 4 comments
Labels: bug

#57 - gratia::derivatives: "Subscript out of bounds"-error on bs="fs" model

Issue - State: closed - Opened by tomand-uio almost 5 years ago - 7 comments
Labels: bug

#54 - Pointwise intervals using gratia vs predict.gam discrepancy

Issue - State: closed - Opened by dshelldhillon about 5 years ago - 6 comments

#51 - Add function to convert from posterior_samples & co to tidybayes versions

Issue - State: open - Opened by gavinsimpson about 5 years ago - 1 comment
Labels: enhancement

#50 - Implement functions to add posterior draws to data

Issue - State: closed - Opened by gavinsimpson about 5 years ago
Labels: enhancement

#46 - problem in code reproduction

Issue - State: closed - Opened by hifrank42 about 5 years ago - 4 comments
Labels: published papers

#45 - Parametric term evaluation for ziplss models

Issue - State: closed - Opened by pboesu over 5 years ago - 5 comments
Labels: bug, enhancement

#43 - Expand data_slice() so it can handle up to 4 variables varying

Issue - State: closed - Opened by gavinsimpson over 5 years ago - 1 comment
Labels: enhancement

#37 - evaluate_1d_smooth doesn't know about ordered by factor smooths

Issue - State: closed - Opened by gavinsimpson over 5 years ago - 2 comments
Labels: bug

#24 - Implement `newdata` in evaluate_smooth methods

Issue - State: closed - Opened by gavinsimpson almost 6 years ago - 1 comment
Labels: enhancement, wontfix

#12 - Handle splines on the sphere

Issue - State: closed - Opened by gavinsimpson about 6 years ago - 1 comment
Labels: enhancement

#10 - Handle models fitted using mgcv::bam()

Issue - State: closed - Opened by gavinsimpson about 6 years ago - 8 comments
Labels: enhancement

#8 - Handle soap film smoother

Issue - State: closed - Opened by gavinsimpson about 6 years ago
Labels: enhancement

#2 - Export some of the useful utility functions

Issue - State: closed - Opened by gavinsimpson over 6 years ago
Labels: enhancement

#1 - Confidence intervals of bivariate smooths

Issue - State: closed - Opened by gavinsimpson over 6 years ago - 3 comments
Labels: enhancement